Diff of the two buildlogs: -- --- b1/build.log 2021-12-14 11:20:19.292335722 +0000 +++ b2/build.log 2021-12-14 12:31:10.831943227 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 16 04:31:21 -12 2023 -I: pbuilder-time-stamp: 1673886681 +I: Current time: Wed Dec 15 01:20:24 +14 2021 +I: pbuilder-time-stamp: 1639480824 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Jan 31 01:20:34 2019 -12 +gpgv: Signature made Fri Feb 1 03:20:34 2019 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rdkit_201809.1+dfsg-6.dsc @@ -35,136 +35,170 @@ dpkg-source: info: applying fix_coordgen_include_path.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2033627/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3948745/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3948745/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3948745/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='89d7782d6f6f470ca2712280d46861b7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2033627' - PS1='# ' - PS2='> ' + INVOCATION_ID=911e4adcf79c434fa4b3e866898888dc + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3948745 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.wB3QX5mcpt/pbuilderrc_1vtz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.wB3QX5mcpt/b1 --logfile b1/build.log rdkit_201809.1+dfsg-6.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.wB3QX5mcpt/pbuilderrc_zYsf --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.wB3QX5mcpt/b2 --logfile b2/build.log rdkit_201809.1+dfsg-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Dec 10 16:21 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/2033627/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 15 01:21 sh -> bash + lrwxrwxrwx 1 root root 4 Nov 8 11:58 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/3948745/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -619,7 +653,7 @@ Get: 357 http://deb.debian.org/debian buster/main amd64 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 358 http://deb.debian.org/debian buster/main amd64 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 359 http://deb.debian.org/debian buster/main amd64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] -Fetched 428 MB in 5s (83.8 MB/s) +Fetched 428 MB in 13s (32.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -2179,7 +2213,8 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/rdkit-201809.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../rdkit_201809.1+dfsg-6_source.changes +hostname: Name or service not known +I: Running cd /build/rdkit-201809.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../rdkit_201809.1+dfsg-6_source.changes dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 201809.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -2315,30 +2350,29 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 + cd obj-x86_64-linux-gnu && make -j15 make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/rdkit-201809.1+dfsg -B/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend -make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/catch /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/catch /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= +make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= -Scanning dependencies of target inchi_support -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py Scanning dependencies of target catch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target inchi_support make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend @@ -2346,32 +2380,33 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 0%] Built target inchi_support Scanning dependencies of target hc -Scanning dependencies of target RDGeneral -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build +Scanning dependencies of target RDGeneral make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hc.c +[ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -[ 2%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hcdriver.c +[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.cpp -[ 2%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hc.c -[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hcdriver.c -[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.cpp +[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.cpp +[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.cpp +[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.cpp +[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.cpp [ 3%] Linking C shared library ../../../../lib/libRDKithc.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 @@ -2401,132 +2436,117 @@ make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= +Scanning dependencies of target testRDValue +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= -make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend Scanning dependencies of target testDict -Scanning dependencies of target testRDValue -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= -make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target RDBoost make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= -make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= -Scanning dependencies of target testMatrices -[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testRDValue.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build -Scanning dependencies of target DataStructs -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target testQuery -make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build +make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend +Scanning dependencies of target testMatrices make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= +make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend +[ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target EigenSolvers -Scanning dependencies of target Catalogs +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testRDValue.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build -Scanning dependencies of target SimDivPickers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target DataStructs +make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build -Scanning dependencies of target testMatCalc cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDict.dir/testDict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testDict.cpp +make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build [ 4%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap.cpp -[ 4%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o +make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target Catalogs +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= +make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build +Scanning dependencies of target testQuery +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend +[ 4%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/testMatrices.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= +make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 4%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.cpp -[ 4%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o [ 4%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -[ 5%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testQuery.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Query/test.cpp +Scanning dependencies of target testMatCalc cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.cpp -[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 4%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o +make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testQuery.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Query/test.cpp +[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT 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'/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function 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/build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.cpp +[ 6%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Utils.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.cpp [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Utils.cpp -[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External 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-ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.cpp -[ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.cpp -[ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.cpp -[ 6%] Linking CXX executable testMatCalc -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 6%] Built target testMatCalc [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.cpp +[ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.cpp +[ 7%] Linking CXX executable testMatCalc +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 7%] Built target testMatCalc [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.cpp -[ 7%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 7%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.09.1 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so -[ 7%] Built target SimDivPickers -make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target testSimDivPickers -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 7%] Built target Catalogs -[ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/testPickers.cpp +[ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 8%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread @@ -2540,309 +2560,347 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 8%] Built target RDBoost make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend +make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= -make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= +[ 8%] Linking CXX executable testMatrices +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread Scanning dependencies of target rdBase make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target Clustering make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 8%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap/RDBase.cpp [ 8%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/Clustering.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 8%] Built target testMatrices +[ 8%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 8%] Built target SimDivPickers +make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= +Scanning dependencies of target testSimDivPickers +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 8%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/testPickers.cpp [ 9%] Linking CXX executable testQuery cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 9%] Built target testQuery -[ 9%] Linking CXX executable testMatrices -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 9%] Linking CXX executable testRDValue cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 9%] Built target testMatrices -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 9%] Built target testRDValue -[ 10%] Linking CXX executable testSimDivPickers -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread ../../lib/libRDKithc.so.1.2018.09.1 -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 10%] Built target testSimDivPickers -[ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.so +[ 9%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.09.1 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 10%] Built target DataStructs +[ 9%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend +make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend +make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= -make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend +make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= -make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= -make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend +make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= +make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= -make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= -make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend -Scanning dependencies of target testDataStructs -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target testFPB +Scanning dependencies of target testDataStructs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= +make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build Scanning dependencies of target testMultiFPB make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target RDGeometryLib Scanning dependencies of target rdMetricMatrixCalc +[ 10%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build -Scanning dependencies of target InfoTheory -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build +Scanning dependencies of target InfoTheory +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testDatastructs.cpp Scanning dependencies of target cDataStructs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -[ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o +make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target RDGeometryLib +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 12%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o +[ 10%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testMultiFPB.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testFPB.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testDatastructs.cpp -make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build -Scanning dependencies of target rdSimDivPickers -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target rdSimDivPickers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build +[ 11%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testFPB.cpp +[ 11%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 12%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o +[ 11%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp +[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DataStructs.cpp [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/point.cpp -[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DataStructs.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.cpp -[ 13%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp -[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.cpp +[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DiscreteValueVect.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.cpp -[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -[ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o +[ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o +[ 12%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp +[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp -[ 13%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.cpp +[ 13%] Linking CXX executable testSimDivPickers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread ../../lib/libRDKithc.so.1.2018.09.1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 13%] Built target Clustering -[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.cpp +[ 13%] Built target testSimDivPickers +[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 13%] Linking CXX executable testDict cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing 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CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.cpp +[ 13%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory 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13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o +[ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c 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../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Built target InfoTheory +make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= +[ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Built target testFPB +make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Data/cQuantize.cpp +[ 15%] Linking CXX executable testMultiFPB +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_FPB.cpp -[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o +[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_Utils.cpp -[ 15%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so +[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp +[ 16%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 16%] Built target rdMetricMatrixCalc +[ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp +[ 16%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp +[ 17%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 16%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so -[ 16%] Built target RDGeometryLib +[ 17%] Built target RDGeometryLib make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend +make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= Scanning dependencies of target testTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 16%] Built target InfoTheory -make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= -[ 16%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o Scanning dependencies of target testGrid -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testTransforms.cpp +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 16%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o +[ 17%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testTransforms.cpp +[ 17%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testGrid.cpp -[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp -[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp -[ 16%] Linking CXX executable testFPB -[ 16%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 16%] Built target rdMetricMatrixCalc make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend -[ 16%] Built target testFPB make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= -make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 17%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/Point.cpp +make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target Alignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/Point.cpp -[ 16%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o +[ 17%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.cpp -[ 17%] Linking CXX executable testMultiFPB -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 17%] Linking CXX executable testDataStructs +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 17%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 17%] Built target testMultiFPB +[ 17%] Built target testDataStructs make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 17%] Built target cQuantize +make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= +Scanning dependencies of target ChemicalFeatures +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 17%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.cpp +[ 17%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/UniformGrid3D.cpp Scanning dependencies of target GraphMol make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.cpp -[ 18%] Linking CXX executable testTransforms -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 18%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../../lib/libRDKithc.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 18%] Built target testTransforms -make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= +[ 18%] Built target rdSimDivPickers [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.cpp -Scanning dependencies of target rdInfoTheory -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.cpp -make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= -Scanning dependencies of target cQuantize -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 19%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Data/cQuantize.cpp -[ 19%] Linking CXX executable testGrid -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 -[ 19%] Linking CXX shared library ../../../lib/libRDKitAlignment.so +[ 20%] Linking CXX executable testTransforms +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 20%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 20%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.09.1 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 19%] Built target testGrid -make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= +[ 20%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 +[ 20%] Built target testTransforms +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target ChemicalFeatures -[ 19%] Built target Alignment +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so +[ 20%] Built target rdInfoTheory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so +[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FindRings.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 20%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend +[ 20%] Built target ChemicalFeatures +make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= -make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target testAlignment -[ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.cpp make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/testAlignment.cpp -make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 19%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o +[ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/testAlignment.cpp +[ 20%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp -[ 20%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../../lib/libRDKithc.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 20%] Built target rdSimDivPickers -[ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp -[ 20%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so +[ 20%] Linking CXX executable testGrid +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 20%] Built target ChemicalFeatures +[ 20%] Built target testGrid make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= @@ -2852,82 +2910,64 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/testChemicalFeatures.cpp -[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.cpp -[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FindRings.cpp -[ 20%] Linking CXX executable testDataStructs -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o +[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/rdGeometry.cpp +[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 20%] Built target testDataStructs -[ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp -[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o +[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.cpp -[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o +[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.cpp -[ 21%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 21%] Built target cQuantize -[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.cpp -[ 21%] Linking CXX executable testAlignment -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 21%] Built target testAlignment -[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/UniformGrid3D.cpp -[ 21%] Linking CXX executable testChemicalFeatures +[ 22%] Linking CXX executable testChemicalFeatures cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 21%] Built target testChemicalFeatures -[ 22%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/rdGeometry.cpp +[ 22%] Built target testChemicalFeatures +[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 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../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 22%] Linking CXX executable testAlignment +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 22%] Built target rdAlignment +[ 22%] Built target testAlignment [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c 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object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 23%] Built target rdInfoTheory [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.cpp +[ 23%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so +cd 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Kekulize.cpp -[ 23%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 23%] Built target cDataStructs +[ 23%] Built target rdAlignment [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDiscriminators.cpp +[ 23%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ConjugHybrid.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AddHs.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 24%] Built target cDataStructs [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Matrices.cpp +[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.cpp @@ -2941,18 +2981,13 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.cpp +[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.cpp [ 25%] Linking CXX shared module ../../../rdkit/rdBase.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.cpp -[ 25%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target rdBase -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 25%] Built target rdGeometry [ 25%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.09.1 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread @@ -2960,225 +2995,220 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend +make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= +make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= -make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend +make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend +make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= -make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend -Scanning dependencies of target Trajectory -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= -make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend +make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend -Scanning dependencies of target Subgraphs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= -Scanning dependencies of target SubstructMatch -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend +make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= +make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend +Scanning dependencies of target Trajectory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= -make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= Scanning dependencies of target MolTransforms -make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 25%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= +Scanning dependencies of target PartialCharges make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= +Scanning dependencies of target MolCatalog make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= -Scanning dependencies of target PartialCharges -Scanning dependencies of target MolInterchange -make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend +make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target SubstructMatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= -Scanning dependencies of target SmilesParse +make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build +Scanning dependencies of target Subgraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.cpp -make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -Scanning dependencies of target MolCatalog -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.cpp -[ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.cpp -make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build +make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build +make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp +make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build [ 25%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 25%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o +Scanning dependencies of target MolInterchange +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o Scanning dependencies of target rdChemicalFeatures -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Writer.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.cpp +make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 25%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.cpp +Scanning dependencies of target rdqueries make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build -[ 25%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o -Scanning dependencies of target SLNParse -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Parser.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o +[ 25%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build -[ 25%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -Scanning dependencies of target rdqueries make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.cpp -[ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o +make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build +[ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.cpp +Scanning dependencies of target SLNParse make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.cpp -[ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -[ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp -[ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o +[ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o +[ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.cpp +make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build +[ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 26%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o +[ 26%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Parser.cpp +[ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdqueries.cpp +Scanning dependencies of target SmilesParse +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 26%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp -[ 26%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o +[ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Queries.cpp +[ 27%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp -[ 27%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.cpp -[ 27%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.cpp -[ 27%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so +[ 27%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Writer.cpp +[ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.cpp +[ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.cpp +[ 28%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 27%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 +[ 29%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 29%] Built target MolTransforms +[ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.cpp +[ 29%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 +[ 29%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 29%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 +[ 29%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 27%] Built target MolTransforms +[ 29%] Built target MolCatalog make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= -[ 27%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.cpp Scanning dependencies of target rdMolTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 27%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so +[ 29%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp -[ 28%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Queries.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 28%] Built target Trajectory +[ 29%] Built target PartialCharges make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make 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'/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 28%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o +[ 29%] Built target Trajectory +make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend +[ 29%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp -[ 28%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so -[ 29%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 29%] Built target MolCatalog -make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= -[ 29%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 -Scanning dependencies of target rdtrajectory -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 29%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Trajectory.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= [ 29%] Built target Subgraphs -[ 29%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp -[ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smarts.tab.cpp -[ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smiles.tab.cpp -[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c 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-lcoordgenlibs -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 30%] Built target MolInterchange -make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend +make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 30%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o +Scanning dependencies of target rdPartialCharges +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build +[ 29%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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-D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp +[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/CXSmilesOps.cpp +[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smarts.tab.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Built target SubstructMatch -make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend +make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= -Scanning dependencies of target rdMolInterchange +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= +Scanning dependencies of target rdtrajectory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build +make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 30%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp -[ 31%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so +[ 30%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Trajectory.cpp +[ 30%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/LinearSearch.cpp +[ 30%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp +[ 30%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 31%] Built target ShapeHelpers +[ 30%] Built target rdChemicalFeatures make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= @@ -3186,68 +3216,46 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 31%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o -smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, std::__cxx11::list*, void*, int, const char*)': -smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter] -smiles.yy:40:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] -smiles.yy:41:31: warning: unused parameter 'lastBond' [-Wunused-parameter] -smiles.yy:42:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] -smiles.yy:43:9: warning: unused parameter 'scanner' [-Wunused-parameter] -smiles.yy:43:21: warning: unused parameter 'start_token' [-Wunused-parameter] -smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, int, const char*)': -smiles.yy:50:29: warning: unused parameter 'input' [-Wunused-parameter] -smiles.yy:52:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] -smiles.yy:53:9: warning: unused parameter 'scanner' [-Wunused-parameter] -smiles.yy:53:21: warning: unused parameter 'start_token' [-Wunused-parameter] +[ 30%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp -smarts.yy: In function 'void yysmarts_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, void*, int, const char*)': -smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter] -smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter] -smarts.yy:26:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] -smarts.yy:27:31: warning: unused parameter 'lastBond' [-Wunused-parameter] -smarts.yy:28:9: warning: unused parameter 'scanner' [-Wunused-parameter] -smarts.yy:28:21: warning: unused parameter 'start_token' [-Wunused-parameter] -[ 31%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/sln.tab.cpp -[ 31%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 31%] Built target PartialCharges -make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= -Scanning dependencies of target rdShapeHelpers -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 31%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp -[ 31%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdTrajectory.cpp -[ 32%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so +[ 30%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp +[ 31%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.09.1 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 32%] Built target Optimizer +[ 31%] Built target Optimizer make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= +smarts.yy: In function 'void yysmarts_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, void*, int, const char*)': +smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter] +smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter] +smarts.yy:26:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] +smarts.yy:27:31: warning: unused parameter 'lastBond' [-Wunused-parameter] +smarts.yy:28:9: warning: unused parameter 'scanner' [-Wunused-parameter] +smarts.yy:28:21: warning: unused parameter 'start_token' [-Wunused-parameter] Scanning dependencies of target testOptimizer make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 32%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o +[ 31%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/testOptimizer.cpp -[ 32%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmiles.cpp +[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smiles.tab.cpp +[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmarts.cpp +[ 32%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/sln.tab.cpp +[ 32%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 32%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 32%] Built target rdChemicalFeatures +[ 32%] Built target rdPartialCharges make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= @@ -3257,32 +3265,86 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.cpp -make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 33%] Built target MolInterchange +make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= -[ 33%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/lex.yysln.cpp -Scanning dependencies of target rdPartialCharges +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= +Scanning dependencies of target rdMolInterchange make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build +make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 34%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp -[ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.cpp +[ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmiles.cpp +[ 33%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp +[ 34%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 34%] Built target ShapeHelpers +make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= +Scanning dependencies of target rdShapeHelpers +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 34%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp +smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, std::__cxx11::list*, void*, int, const char*)': +smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter] +smiles.yy:40:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] +smiles.yy:41:31: warning: unused parameter 'lastBond' [-Wunused-parameter] +smiles.yy:42:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] +smiles.yy:43:9: warning: unused parameter 'scanner' [-Wunused-parameter] +smiles.yy:43:21: warning: unused parameter 'start_token' [-Wunused-parameter] +smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, int, const char*)': +smiles.yy:50:29: warning: unused parameter 'input' [-Wunused-parameter] +smiles.yy:52:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] +smiles.yy:53:9: warning: unused parameter 'scanner' [-Wunused-parameter] +smiles.yy:53:21: warning: unused parameter 'start_token' [-Wunused-parameter] +[ 34%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdTrajectory.cpp +[ 34%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 34%] Linking CXX executable testOptimizer +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 34%] Built target rdqueries +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp +[ 35%] Built target testOptimizer +[ 35%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/lex.yysln.cpp sln.yy: In function 'void yysln_error(const char*, std::vector*, bool, void*, const char*)': sln.yy:60:43: warning: unused parameter 'ms' [-Wunused-parameter] sln.yy:60:51: warning: unused parameter 'doQ' [-Wunused-parameter] sln.yy:61:13: warning: unused parameter 'scanner' [-Wunused-parameter] -[ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.cpp -[ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.cpp -[ 34%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so +[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.cpp +[ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o +[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 35%] Built target rdMolTransforms +[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.cpp +[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.cpp +[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.cpp +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.cpp +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.cpp /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yy_fatal_error(const char*, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_alloc(yy_size_t, yyscan_t)': @@ -3291,52 +3353,22 @@ /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yysln_free(void*, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter 'yyscanner' [-Wunused-parameter] -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 34%] Built target rdMolTransforms -[ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.cpp -[ 34%] Linking CXX executable testOptimizer -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 -[ 34%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so +[ 36%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 34%] Built target testOptimizer -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 35%] Built target rdtrajectory -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.cpp -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o +[ 36%] Built target rdtrajectory +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.cpp -[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.cpp -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.cpp -[ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o ../../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 35%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so +[ 36%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 35%] Built target rdMolInterchange -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.cpp -[ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.cpp -[ 35%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.09.1 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing 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../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13: @@ -3377,42 +3409,32 @@ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 36%] Built target SLNParse -[ 36%] Built target rdPartialCharges -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 37%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp -[ 37%] Built target SmilesParse -[ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o +[ 36%] Built target SmilesParse make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 37%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.cpp +[ 36%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/memtest1.cpp +[ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.cpp +[ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.cpp +[ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.cpp +[ 37%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.09.1 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.cpp -[ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.cpp -[ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.cpp -[ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.cpp -[ 37%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 38%] Built target rdqueries +[ 37%] Built target SLNParse make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= @@ -3420,42 +3442,61 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 37%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testCanon.cpp +[ 37%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o ../../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 37%] Built target rdMolInterchange make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= -[ 38%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testCanon.cpp Scanning dependencies of target test-valgrind make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 39%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o +[ 38%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test-valgrind.cpp -[ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.cpp -[ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so +[ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.cpp +[ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.cpp +[ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.cpp +[ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 38%] Built target rdShapeHelpers make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= -[ 39%] Built target rdShapeHelpers -make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 39%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/querytest.cpp +[ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.cpp +[ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.cpp +[ 40%] Linking CXX shared library ../../../lib/libRDKitDepictor.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.09.1 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +[ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 40%] Built target Depictor +make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolIterTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/querytest.cpp [ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/itertest.cpp make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend @@ -3476,8 +3517,6 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp -[ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= @@ -3487,6 +3526,8 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test2.cpp +[ 42%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= @@ -3496,6 +3537,11 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smatest.cpp +[ 42%] Linking CXX executable graphmolMemTest1 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 42%] Built target graphmolMemTest1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= @@ -3505,52 +3551,38 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.cpp -[ 43%] Linking CXX executable test-valgrind -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 43%] Linking CXX executable graphmolMemTest1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend +make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= -Scanning dependencies of target Fingerprints -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make 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-DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= -[ 44%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test1.cpp Scanning dependencies of target testSubgraphs2 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test2.cpp -[ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.cpp -[ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp -[ 44%] Linking CXX executable graphmoltestCanon -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 44%] Linking CXX executable test-valgrind +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target graphmoltestCanon +[ 44%] Built target test-valgrind make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= @@ -3560,12 +3592,13 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp -[ 44%] Linking CXX shared library ../../../lib/libRDKitDepictor.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.09.1 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so +[ 44%] Linking CXX executable graphmoltestCanon +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 45%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target Depictor +[ 45%] Built target graphmoltestCanon make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= @@ -3573,46 +3606,46 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o +[ 45%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/test1.cpp -[ 44%] Linking CXX executable smiTest2 +[ 45%] Linking CXX executable smiTest2 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 45%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target smiTest2 +[ 45%] Linking CXX executable graphmolcpTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 +[ 45%] Built target smiTest2 make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser Scanning dependencies of target MolChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o +[ 45%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp -[ 44%] Linking CXX executable graphmolIterTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target graphmolIterTest +[ 45%] Built target graphmolcpTest make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= +[ 45%] Linking CXX shared library ../../lib/libRDKitForceField.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 Scanning dependencies of target ReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp -[ 44%] Linking CXX executable graphmolcpTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 44%] Linking CXX shared library ../../lib/libRDKitForceField.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.09.1 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 45%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp +[ 45%] Linking CXX executable graphmolIterTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target graphmolcpTest +[ 45%] Built target graphmolIterTest make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= @@ -3620,11 +3653,11 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o +[ 45%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/test.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target ForceField +[ 45%] Built target ForceField make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= @@ -3632,27 +3665,38 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o +[ 45%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp -[ 44%] Linking CXX executable testSubgraphs1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 45%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp +[ 45%] Linking CXX executable testPartialCharges +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 45%] Built target testPartialCharges +[ 45%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.cpp +[ 45%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp +[ 46%] Linking CXX executable testSubgraphs2 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target testSubgraphs1 +[ 46%] Built target testSubgraphs2 make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= -[ 44%] Linking CXX executable testPartialCharges -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser Scanning dependencies of target FileParsers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o +[ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp +[ 46%] Linking CXX executable testSubgraphs1 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Built target testPartialCharges +[ 46%] Built target testSubgraphs1 make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= @@ -3660,38 +3704,31 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o +[ 46%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp -[ 45%] Linking CXX executable testSubgraphs2 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 -/usr/bin/c++ 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp -[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/PatternFingerprints.cpp -[ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 46%] Linking CXX executable graphmolqueryTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 46%] Built target graphmolqueryTest -[ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp +[ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp +[ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 47%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 47%] Built target ChemTransforms -[ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp +[ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.cpp +[ 47%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= @@ -3701,23 +3738,16 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 48%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdchem.cpp -[ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 49%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so +[ 48%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp +[ 48%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 -[ 49%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 49%] Built target rdSLNParse -[ 49%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so +[ 48%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Built target ReducedGraphs -[ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.cpp +[ 48%] Built target ReducedGraphs make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= @@ -3725,74 +3755,117 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o +[ 48%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/test1.cpp -[ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp +[ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 49%] Built target rdSLNParse make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= -[ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp Scanning dependencies of target rdReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp +[ 49%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp +[ 49%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 49%] Built target FragCatalog +[ 49%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.cpp [ 49%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.cpp -[ 50%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp -[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.cpp -[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o +[ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp -[ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp -[ 51%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 51%] Linking CXX executable testReducedGraphs +[ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp +[ 50%] Linking CXX executable testReducedGraphs cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 51%] Built target testReducedGraphs -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so -[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 51%] Built target FilterCatalog -[ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.cpp +[ 50%] Built target testReducedGraphs +[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.cpp +[ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDWriter.cpp -[ 51%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so +[ 52%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 51%] Built target FragCatalog -[ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp -[ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o +[ 52%] Built target MolChemicalFeatures +[ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 51%] Built target smaTest1 -[ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED 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CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o +make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= +Scanning dependencies of target rdMolChemicalFeatures +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.cpp +[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated 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../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 53%] Built target testSLNParse +[ 53%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp +[ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp +[ 54%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp +[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp +[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Table.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Table.cpp -[ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o +[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp +[ 55%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 55%] Built target FilterCatalog +[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp +[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileWriter.cpp +[ 55%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp +[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:329:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] @@ -3809,18 +3882,6 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:367:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] -[ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp -[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp -[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesWriter.cpp -[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp -[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp -[ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] @@ -3851,8 +3912,18 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] -[ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o +[ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp +[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Atom.cpp +[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Bond.cpp +[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp +[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp +[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBSupplier.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:409:57: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter 'ownsBondInvGen' [-Wunused-parameter] @@ -3889,9 +3960,10 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ -[ 54%] Linking CXX executable testSLNParse -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.cpp +[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MaeMolSupplier.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter 'arguments' [-Wunused-parameter] @@ -3920,29 +3992,14 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ -[ 54%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp -[ 54%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o +[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.cpp +[ 56%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Built target testSLNParse -[ 54%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp -[ 55%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Built target MolChemicalFeatures -make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= -Scanning dependencies of target rdMolChemicalFeatures -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp +[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp +[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] @@ -3977,10 +4034,9 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ -[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp -[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Bond.cpp +[ 56%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter 'arguments' [-Wunused-parameter] @@ -4015,10 +4071,17 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ -[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o +[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Mol.cpp -[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileWriter.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 56%] Built target ForceFieldHelpers +[ 56%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SVGParser.cpp +[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Conformer.cpp +[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/RingInfo.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(bool, uint32_t, bool, std::vector, uint32_t) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:161:7: required from 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool, uint32_t, RDKit::AtomInvariantsGenerator*, bool, std::vector, uint32_t, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]' @@ -4032,8 +4095,6 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:21:1: warning: when initialized here [-Wreorder] TopologicalTorsionArguments::TopologicalTorsionArguments( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'std::vector*> RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:61:62: warning: unused parameter 'confId' [-Wunused-parameter] @@ -4062,124 +4123,69 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ -[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp -[ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Conformer.cpp -[ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o +[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/EditableMol.cpp +[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp -[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp -[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBSupplier.cpp -[ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/RingInfo.cpp -[ 56%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MaeMolSupplier.cpp [ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Built target Fingerprints -make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make 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57%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp -[ 57%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Built target ForceFieldHelpers -make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= -Scanning dependencies of target SubstructLibrary -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp -[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp -[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.cpp -[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SVGParser.cpp -[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/EditableMol.cpp [ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MonomerInfo.cpp -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'const std::vector RDKit::FingerprintWrapper::convertPyArgumentsForBulk(const boost::python::list&)': -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:190:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - for (int i = 0; i < len; i++) { - ~~^~~~~ -In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:17: -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganWrapper::getMorganGenerator(unsigned int, bool, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:121:63: required from here -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:24:50: warning: unused parameter 'includeRingMembership' [-Wunused-parameter] - const bool onlyNonzeroInvariants, const bool includeRingMembership, - ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:18: -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::RDKitFPWrapper::getRDKitFPGenerator(unsigned int, unsigned int, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:92:63: required from here -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:27:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] - BondInvariantsGenerator *bondInvariantsGenerator = nullptr; - ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:19: -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsionWrapper::getTopologicalTorsionFPGenerator(bool, uint32_t, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:75:63: required from here -/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:26:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] - BondInvariantsGenerator *bondInvariantsGenerator = nullptr; - ^~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp -[ 58%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o +[ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolBundle.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Built target rdMolChemicalFeatures +[ 57%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target MolAlign -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o +[ 57%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.cpp -[ 58%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp -[ 58%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 57%] Built target Fingerprints +make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target MolAlign +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o +make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 57%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp +[ 58%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp +[ 58%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= +Scanning dependencies of target rdFingerprintGenerator +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 58%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp +[ 58%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.cpp +[ 58%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp +[ 58%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.cpp make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= @@ -4187,88 +4193,54 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f 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CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Built target SubstructLibrary -[ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.cpp -[ 60%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp -[ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.cpp -[ 60%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.09.1 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 60%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Built target DistGeometry -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= -make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= -make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= -Scanning dependencies of target testDistGeom -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build +make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target DistGeomHelpers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= +Scanning dependencies of target SubstructLibrary make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build +make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target DistGeom +[ 58%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp +[ 59%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build -[ 60%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/testDistGeom.cpp -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp -[ 60%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -[ 60%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap/DistGeom.cpp +[ 59%] Built target rdMolChemicalFeatures cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Built target FileParsers +[ 59%] Built target FileParsers make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend +make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend +make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= -make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= -make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target graphmolMolOpsTest Scanning dependencies of target graphmolTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o +[ 59%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/testUFFForceField.cpp +Scanning dependencies of target graphmolMolOpsTest +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test1.cpp [ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/molopstest.cpp -[ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test1.cpp make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= @@ -4276,13 +4248,8 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o +[ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testChirality.cpp -[ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 61%] Built target rdFingerprintGenerator make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= @@ -4290,7 +4257,7 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o +[ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testPickler.cpp make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -4299,7 +4266,7 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o +[ 61%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testMolBundle.cpp make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -4308,8 +4275,33 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o +[ 61%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/resMolSupplierTest.cpp +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'const std::vector RDKit::FingerprintWrapper::convertPyArgumentsForBulk(const boost::python::list&)': +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:190:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + for (int i = 0; i < len; i++) { + ~~^~~~~ +In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:17: +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganWrapper::getMorganGenerator(unsigned int, bool, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:121:63: required from here +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:24:50: warning: unused parameter 'includeRingMembership' [-Wunused-parameter] + const bool onlyNonzeroInvariants, const bool includeRingMembership, + ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:18: +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::RDKitFPWrapper::getRDKitFPGenerator(unsigned int, unsigned int, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:92:63: required from here +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:27:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] + BondInvariantsGenerator *bondInvariantsGenerator = nullptr; + ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:19: +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsionWrapper::getTopologicalTorsionFPGenerator(bool, uint32_t, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:75:63: required from here +/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:26:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] + BondInvariantsGenerator *bondInvariantsGenerator = nullptr; + ^~~~~~~~~~~~~~~~~~~~~~~ +[ 61%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.09.1 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= @@ -4317,14 +4309,11 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o +[ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testPicklerGlobalSettings.cpp -[ 62%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.09.1 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Built target MolAlign +[ 61%] Built target DistGeometry make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= @@ -4332,13 +4321,14 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o +[ 61%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/hanoitest.cpp -[ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 62%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Built target rdForceFieldHelpers +[ 62%] Built target SubstructLibrary make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= @@ -4348,11 +4338,12 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/catch_tests.cpp -[ 62%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 62%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.09.1 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Built target DistGeom +[ 62%] Built target MolAlign make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu 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-Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/testDepictor.cpp -[ 62%] Linking CXX executable testDistGeom -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 62%] Linking CXX executable testUFFForceField +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Built target testDistGeom +[ 62%] Built target testUFFForceField make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= @@ -4376,6 +4367,11 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp +[ 62%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 62%] Built target rdForceField make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= @@ -4385,40 +4381,39 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest1.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test.cpp -[ 62%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 63%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 63%] Linking CXX executable testUFFForceField -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so +[ 63%] Linking CXX executable resMolSupplierTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 63%] Built target DistGeomHelpers +[ 63%] Built target resMolSupplierTest make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target cxsmilesTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 63%] Built target testUFFForceField +[ 63%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/cxsmiles_test.cpp +[ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 63%] Built target rdForceFieldHelpers make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= -[ 63%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/cxsmiles_test.cpp Scanning dependencies of target smiTestCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/catch_tests.cpp +[ 63%] Linking CXX executable molBundleTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 63%] Built target rdchem +[ 63%] Built target molBundleTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= @@ -4428,11 +4423,14 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMol2ToMol.cpp -[ 63%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 63%] Linking CXX executable graphmolTest1 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 63%] Built target rdForceField +[ 63%] Built target rdFingerprintGenerator make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= @@ -4442,11 +4440,8 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp -[ 64%] Linking CXX executable resMolSupplierTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Built target resMolSupplierTest +[ 63%] Built target graphmolTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= @@ -4454,13 +4449,13 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o +[ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp -[ 64%] Linking CXX executable molBundleTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +[ 63%] Linking CXX executable graphmoltestPicklerGlobalSetting +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Built target molBundleTest +[ 63%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers 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-I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp -[ 64%] Linking CXX executable graphmoltestPicklerGlobalSetting -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 64%] Linking CXX executable testDepictor -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 63%] Linking CXX executable hanoiTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Built target testDepictor +[ 63%] Built target hanoiTest make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersCatchTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Built target graphmoltestPicklerGlobalSetting +[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/catch_tests.cpp +[ 64%] Linking CXX executable graphmoltestPickler +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 64%] Built target graphmoltestPickler make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend -[ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/catch_tests.cpp Scanning dependencies of target fileParsersTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o +[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/test1.cpp -[ 65%] Linking CXX executable testMol2ToMol -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +[ 64%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 64%] Linking CXX executable testDepictor +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Built target testMol2ToMol +[ 64%] Built target testDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= @@ -4510,13 +4508,16 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o +[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testTpls.cpp -[ 65%] Linking CXX executable testExtendedStereoParsing -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 64%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 64%] Linking CXX executable testMol2ToMol +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Built target testExtendedStereoParsing +[ 64%] Built target rdDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= @@ -4524,16 +4525,10 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testSequence.cpp -[ 65%] Linking CXX executable hanoiTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 65%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Built target hanoiTest +[ 64%] Built target testMol2ToMol +[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testSequence.cpp make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= @@ -4541,10 +4536,13 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o +[ 64%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/test1.cpp -[ 65%] Built target rdDepictor +[ 64%] Linking CXX executable cxsmilesTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 64%] Built target cxsmilesTest make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= @@ -4552,41 +4550,38 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o +[ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.cpp -[ 65%] Linking CXX executable graphmolTest1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 65%] Linking CXX executable cxsmilesTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +[ 64%] Linking CXX executable testExtendedStereoParsing +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Built target graphmolTest1 +[ 64%] Built target testExtendedStereoParsing make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= -Scanning dependencies of target testChemTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target testChemTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Built target cxsmilesTest +[ 64%] Built target rdchem make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= -[ 66%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o +[ 65%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/testChemTransforms.cpp Scanning dependencies of target filterCatalogTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp -[ 66%] Linking CXX executable graphmoltestPickler -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 65%] Linking CXX executable testTplParser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 66%] Built target graphmoltestPickler +[ 65%] Built target testTplParser make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= @@ -4594,13 +4589,13 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o +[ 66%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp -[ 67%] Linking CXX executable testSequence +[ 66%] Linking CXX executable testSequence cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target testSequence +[ 66%] Built target testSequence make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= @@ -4608,13 +4603,31 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o +[ 66%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/test1.cpp -[ 67%] Linking CXX executable testTplParser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.cpp +[ 66%] Linking CXX executable filterCatalogTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 66%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target testTplParser +[ 66%] Built target filterCatalogTest +[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.cpp +[ 66%] Linking CXX executable testSubstructMatch +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 66%] Built target testSubstructMatch +[ 66%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.cpp +[ 66%] Linking CXX executable testFragCatalog +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 66%] Built target testFragCatalog make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= @@ -4622,13 +4635,19 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o +[ 66%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp -[ 67%] Linking CXX executable graphmoltestChirality -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp +[ 67%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.cpp +[ 67%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp +[ 67%] Linking CXX executable testChemTransforms +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target graphmoltestChirality +[ 67%] Built target testChemTransforms make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= @@ -4638,15 +4657,15 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/test1.cpp -[ 68%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp -[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.cpp -[ 69%] Linking CXX executable testMolSupplier -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.cpp +[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.cpp +[ 68%] Linking CXX executable testMolWriter +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target testMolSupplier +[ 68%] Built target testMolWriter make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= @@ -4654,38 +4673,14 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o +[ 68%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp -[ 69%] Linking CXX executable testMolWriter -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 -[ 69%] Linking CXX executable filterCatalogTest -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target testMolWriter -make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target filterCatalogTest -make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend -Scanning dependencies of target testMolTransforms -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/test1.cpp -Scanning dependencies of target testMMFFForceFieldHelpers -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp -[ 69%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp +[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp +[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp +[ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h:21, from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:12: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function 'void testAtomPairNonSparseBitvector()': @@ -4703,69 +4698,22 @@ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:2388:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = 0; i < results->size(); i++) { ~~^~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.cpp -[ 69%] Linking CXX executable testFragCatalog -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target testFragCatalog -make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= -Scanning dependencies of target testUFFForceFieldHelpers -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp -[ 69%] Linking CXX executable testSubstructMatch -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target testSubstructMatch -make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= -Scanning dependencies of target testCrystalForceField -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp -[ 69%] Linking CXX executable testChemTransforms -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 69%] Linking CXX executable testMolTransforms -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target testChemTransforms -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= -Scanning dependencies of target testDistGeomHelpers -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp +[ 69%] Linking CXX executable smiTest1 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +[ 69%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target testMolTransforms -make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend +[ 69%] Built target smiTest1 +make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp -[ 70%] Linking CXX executable smiTest1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 70%] Built target smiTest1 +[ 69%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/test1.cpp make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= @@ -4773,13 +4721,19 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 70%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o +[ 69%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp -[ 70%] Linking CXX executable testMMFFForceFieldHelpers -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 70%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp +[ 70%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 70%] Linking CXX executable fileParsersCatchTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 70%] Built target testMMFFForceFieldHelpers +[ 70%] Built target Descriptors make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= @@ -4789,11 +4743,8 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp -[ 70%] Linking CXX executable testCrystalForceField -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 70%] Built target testCrystalForceField +[ 70%] Built target fileParsersCatchTest make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= @@ -4803,13 +4754,11 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/test1.cpp -[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.cpp -[ 70%] Linking CXX executable testShapeHelpers -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 70%] Linking CXX executable testMolTransforms +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 70%] Built target testShapeHelpers +[ 70%] Built target testMolTransforms make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= @@ -4819,13 +4768,13 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp -[ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp -[ 71%] Linking CXX executable testFingerprintGenerators -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +[ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp +[ 71%] Linking CXX executable testShapeHelpers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target testFingerprintGenerators +[ 71%] Built target testShapeHelpers make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= @@ -4835,11 +4784,27 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.cpp -[ 71%] Linking CXX executable testUFFForceFieldHelpers -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 71%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.cpp +[ 71%] Linking CXX executable testFeatures +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target testUFFForceFieldHelpers +[ 71%] Built target testFeatures +make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= +Scanning dependencies of target MolHash +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.cpp +[ 72%] Linking CXX executable testMolCatalog +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target testMolCatalog make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= @@ -4847,32 +4812,56 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o +[ 72%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.cpp -[ 71%] Linking CXX executable testFeatures -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 72%] Linking CXX executable testFingerprintGenerators +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Built target testFeatures +[ 72%] Built target testFingerprintGenerators +make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target rdfiltercatalog make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build +Scanning dependencies of target StructChecker +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o +[ 72%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/trajectoryTest.cpp -[ 71%] Linking CXX executable testDistGeomHelpers -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 -[ 72%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 72%] Linking CXX executable testMolCatalog -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser +[ 72%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.cpp +[ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Built target testDistGeomHelpers +[ 72%] Built target rdfragcatalog +[ 72%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/HashToString.cpp +[ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp +[ 72%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp +[ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 72%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructureFlags.cpp +[ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.cpp +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 72%] Built target rdMolCatalog make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= @@ -4882,45 +4871,41 @@ make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp +[ 72%] Linking CXX shared library ../../../lib/libRDKitMMPA.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.09.1 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 73%] Linking CXX executable trajectoryTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Built target testMolCatalog +[ 73%] Built target trajectoryTest make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= +[ 73%] Built target MMPA +make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= Scanning dependencies of target rdSubstructLibrary make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o +[ 73%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp -[ 72%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp -[ 73%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp -[ 73%] Linking CXX executable smiTestCatch -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser -[ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 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-DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/test1.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target smiTestCatch -[ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.cpp [ 73%] Linking CXX executable testFingerprints cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 73%] Linking CXX shared library ../../../lib/libRDKitMolHash.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.09.1 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target testFingerprints make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend @@ -4928,386 +4913,193 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolfiles make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolfiles.cpp -[ 73%] Linking CXX shared library ../../../lib/libRDKitMMPA.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.09.1 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target MMPA -[ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp -[ 74%] Linking CXX executable trajectoryTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 74%] Linking CXX executable substructLibraryTest -[ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 74%] Built target trajectoryTest -make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= -Scanning dependencies of target testMMFFForceField -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build +[ 73%] Built target MolHash +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS 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/usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp +/build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector >&)': +/build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:354:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fp, "%d", &n); + ~~~~~~^~~~~~~~~~~~~~ +[ 74%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 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Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target rdMMPA -[ 75%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= +Scanning dependencies of target testDistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build -cd 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object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp -[ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o -cd 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp -[ 76%] Linking CXX executable graphmolTestsCatch +[ 74%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/testDistGeom.cpp +[ 74%] Linking CXX executable graphmolTestsCatch cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -o graphmolTestsCatch ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -[ 76%] Linking CXX executable fileParsersCatchTest -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target graphmolTestsCatch -[ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.cpp -[ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o -cd 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../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g 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-I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.cpp -[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDMolSupplier.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 77%] Built target fileParsersTest1 -[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTMolSupplier.cpp -[ 77%] Linking CXX executable testMMPA -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic 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-DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp -[ 77%] Linking CXX executable molInterchangeTest1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 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Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesMolSupplier.cpp -[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp -[ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 77%] Built target rdMMPA -[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c 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/build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.cpp -[ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp -[ 79%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp -[ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so -cd 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap/DistGeom.cpp +[ 74%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.cpp +[ 74%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ 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CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= Scanning dependencies of target testAUTOCORR2D make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build -Scanning dependencies of target testDescriptors make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 76%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c 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-I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/test.cpp +[ 76%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.cpp +[ 76%] Linking CXX executable testDistGeom +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build +[ 76%] Built target testDistGeom +make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDescriptors -Scanning dependencies of target MolHash -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target rdMolAlign make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make 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-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp +[ 76%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.cpp +[ 76%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 76%] Built target DistGeom +make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= +Scanning dependencies of target rdMolAlign make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/test.cpp -[ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -[ 80%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/testMolAlign.cpp -[ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.cpp -cd 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructureFlags.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target graphmolMolOpsTest -[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD 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object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/HashToString.cpp -[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionWriter.cpp -[ 82%] Linking CXX executable testAUTOCORR2D +[ 77%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.cpp +[ 77%] Linking CXX executable testAUTOCORR2D cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target testAUTOCORR2D -[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionDepict.cpp -[ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.cpp -/build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector >&)': -/build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:354:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] - fscanf(fp, "%d", &n); - ~~~~~~^~~~~~~~~~~~~~ -[ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp -[ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Linking CXX executable testMolAlign -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 -[ 85%] Built target rdFMCS -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target testMolAlign -[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MoleculeParser.cpp -[ 85%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so +[ 77%] Built target testAUTOCORR2D +make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= +Scanning dependencies of target testFMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Built target RGroupDecomposition -[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.cpp -[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.cpp -[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o 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dependencies of target rdFMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build +make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp -[ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.cpp -[ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED 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Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend +[ 78%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp +make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= -Scanning dependencies of target rdRGroupDecomposition +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= +Scanning dependencies of target FMCStest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build +make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp -[ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT 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../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.cpp +[ 79%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp +[ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/DaylightParser.cpp +[ 79%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.09.1 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 79%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target rdMolAlign +[ 79%] Built target StructChecker make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= @@ -5315,8 +5107,13 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o +[ 79%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/testMolHash.cpp +[ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target rdSubstructLibrary make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= @@ -5324,8 +5121,54 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o +[ 79%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp +[ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.cpp +[ 79%] Linking CXX executable testFMCS +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionWriter.cpp +[ 79%] Built target testFMCS +make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= +Scanning dependencies of target testMMPA +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA_UnitTest.cpp +[ 79%] Linking CXX executable FMCStest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 +[ 79%] Linking CXX executable testMolHash +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target FMCStest +make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target rdMMPA +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target testMolHash +make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= +[ 80%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp +Scanning dependencies of target testStructChecker +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 80%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/testStructChecker.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h:19, @@ -5350,50 +5193,247 @@ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ -[ 87%] Linking CXX executable testRGroupDecomp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target testRGroupDecomp -[ 87%] Linking CXX executable testDescriptors +[ 80%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionDepict.cpp +[ 80%] Linking CXX executable testDescriptors cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target testDescriptors -[ 87%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.09.1 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -[ 87%] Linking CXX executable testMolHash -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target StructChecker -make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend +[ 80%] Built target testDescriptors make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= -[ 87%] Built target testMolHash Scanning dependencies of target rdStructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target testStructChecker +[ 80%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap/structchecker.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build +[ 80%] Built target rdFMCS +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap/structchecker.cpp -[ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/testStructChecker.cpp -[ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= +Scanning dependencies of target RGroupDecomposition +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 80%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp +[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp +[ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MaeMolSupplier.cpp +[ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 82%] Linking CXX executable testMMPA +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 82%] Built target rdMolHash +make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= +Scanning dependencies of target testMMFFForceField +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target rdMolHash +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/testMMFFForceField.cpp +[ 83%] Built target rdMolAlign +make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend +[ 83%] Built target testMMPA +make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= +Scanning dependencies of target testMMFFForceFieldHelpers +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target testUFFForceFieldHelpers +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp +[ 83%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp +[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.cpp +[ 83%] Linking CXX executable testStructChecker +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target testStructChecker +make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= +Scanning dependencies of target testCrystalForceField +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp +[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MoleculeParser.cpp +[ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Built target rdMMPA +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= +Scanning dependencies of target testDistGeomHelpers +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 83%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp +[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o +cd 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../../../../rdkit/Chem/rdStructChecker.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 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target rdMolDescriptors +[ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.cpp +[ 85%] Linking CXX executable testMMFFForceFieldHelpers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 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+/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Built target RGroupDecomposition +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition 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-I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp +[ 86%] Linking CXX executable testUFFForceFieldHelpers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= +Scanning dependencies of target rdRGroupDecomposition +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS 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-ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp +[ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp +[ 87%] Linking CXX executable testMolAlign +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra 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-fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp +[ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp +[ 88%] Linking CXX executable testDistGeomHelpers +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target testDistGeomHelpers +[ 88%] Linking CXX executable testRGroupDecomp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target testRGroupDecomp +[ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target rdDistGeom +[ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target rdRGroupDecomposition [ 88%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread @@ -5402,21 +5442,21 @@ [ 88%] Built target ChemReactions make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend +make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= -make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= -make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= +make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend +make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend +make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -5425,99 +5465,89 @@ make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build Scanning dependencies of target testEnumeration -Scanning dependencies of target testReaction -Scanning dependencies of target rxnTestCatch +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target rxnTestCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build +make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target rdChemReactions -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target testReaction make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp +[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o Scanning dependencies of target MolDraw2D +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/catch_tests.cpp -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp [ 89%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp -Scanning dependencies of target MolStandardize -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build [ 89%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -[ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp +[ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp +Scanning dependencies of target MolStandardize +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.cpp -[ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 90%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolfiles.so 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'/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target rdRGroupDecomposition +[ 90%] Built target rdmolfiles [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall 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-fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.cpp -[ 90%] Linking CXX executable testReactionFingerprints -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ 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Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.cpp [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.cpp +[ 91%] Linking CXX executable testReactionFingerprints +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 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-DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp -[ 91%] Linking CXX executable testStructChecker -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 91%] Built target testReactionFingerprints [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target testStructChecker [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp -[ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp -[ 91%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target rdStructChecker -[ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 91%] Linking CXX executable testEnumeration cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target testEnumeration +[ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp +[ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o @@ -5531,29 +5561,29 @@ [ 92%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target MolDraw2D [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target MolDraw2D make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend -make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build -Scanning dependencies of target moldraw2DRxnTest1 make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/test1.cpp +make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend +make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= +Scanning dependencies of target moldraw2DRxnTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/test1.cpp [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/rxn_test1.cpp make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend @@ -5576,19 +5606,9 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolops.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolOps.cpp -[ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target rdMolDescriptors -[ 93%] Linking CXX executable moldraw2DRxnTest1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 93%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target moldraw2DRxnTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target MolStandardize @@ -5605,145 +5625,160 @@ make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend +Scanning dependencies of target molChargeTest +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build +Scanning dependencies of target molNormalizeTest +Scanning dependencies of target molFragmentTest +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +Scanning dependencies of target molTautomerTest +make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= -make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= -Scanning dependencies of target molTautomerTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build -make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target molValidateTest -Scanning dependencies of target molFragmentTest -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build -Scanning dependencies of target molNormalizeTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build -Scanning dependencies of target molStandardizeSmallTest -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -Scanning dependencies of target molStandardizeTest +[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testCharge.cpp +[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o +[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testFragment.cpp +[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testNormalize.cpp +[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testTautomer.cpp +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION 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moldraw2DTest1 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization 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cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= +Scanning dependencies of target rdMolStandardize make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build -[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o -[ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ 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93%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Charge.cpp -[ 94%] Linking CXX executable molNormalizeTest +[ 95%] Linking CXX executable molNormalizeTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 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-I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp +[ 95%] Built target molNormalizeTest +[ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Validate.cpp +[ 95%] Linking CXX executable molFragmentTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization [ 96%] Linking CXX executable molChargeTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 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/usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 -[ 96%] Built target molChargeTest -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization -[ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Metal.cpp -make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target molFragmentTest -[ 97%] Linking CXX executable moldraw2DTest1 -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 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../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread +[ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp [ 97%] Linking CXX executable molValidateTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 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'/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target molValidateTest +[ 97%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp +[ 97%] Linking CXX executable molStandardizeSmallTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 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/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Metal.cpp [ 97%] Linking CXX executable molStandardizeTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization +[ 97%] Linking CXX executable smiTestCatch +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target rdMolDraw2D +[ 97%] Built target smiTestCatch [ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat 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-Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 98%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target rxnTestCatch +[ 98%] Built target rdMolDraw2D [ 98%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target rdMolStandardize +[ 98%] Linking CXX executable rxnTestCatch +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 98%] Built target rxnTestCatch [ 98%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target rdmolops -[ 99%] Linking CXX executable testReaction -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +[ 98%] Linking CXX executable graphmolMolOpsTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 99%] Built target testReaction -[100%] Linking CXX executable molTautomerTest +[ 98%] Built target graphmolMolOpsTest +[ 99%] Linking CXX executable molTautomerTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[100%] Built target molTautomerTest +[ 99%] Built target molTautomerTest +[100%] Linking CXX executable testReaction +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser +make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[100%] Built target testReaction make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -13169,10 +13204,10 @@ /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/rdchem.so #export RDBASE=/build/rdkit-201809.1+dfsg PYTHONPATH=/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/ LD_LIBRARY_PATH="/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//lib:" PYTHONPATH=/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/:/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//rdkit/Chem/ LD_LIBRARY_PATH="/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//lib:" dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 + cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process -j16 +/usr/bin/ctest --force-new-ctest-process -j15 Test project /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu Start 1: testDict Start 2: testRDValue @@ -13189,286 +13224,445 @@ Start 13: testMatrices Start 14: testAlignment Start 15: pyAlignment + 1/142 Test #2: testRDValue ........................ Passed 0.45 sec Start 16: testOptimizer - 1/142 Test #2: testRDValue ........................ Passed 0.37 sec + 2/142 Test #3: testDataStructs .................... Passed 0.48 sec Start 17: testUFFForceField - 2/142 Test #3: testDataStructs .................... Passed 0.38 sec + 3/142 Test #4: testFPB ............................ Passed 0.45 sec Start 18: testMMFFForceField - 3/142 Test #4: testFPB ............................ Passed 0.37 sec - Start 19: pyForceFieldConstraints 4/142 Test #10: testTransforms ..................... Passed 0.26 sec + Start 19: pyForceFieldConstraints + 5/142 Test #13: testMatrices ....................... Passed 0.20 sec Start 20: testDistGeom - 5/142 Test #13: testMatrices ....................... Passed 0.22 sec + 6/142 Test #5: testMultiFPB ....................... Passed 0.48 sec Start 21: pyDistGeom - 6/142 Test #5: testMultiFPB ....................... Passed 0.42 sec + 7/142 Test #11: testGrid ........................... Passed 0.24 sec Start 22: graphmolTest1 - 7/142 Test #11: testGrid ........................... Passed 0.28 sec + 8/142 Test #14: testAlignment ...................... Passed 0.23 sec Start 23: graphmolcpTest - 8/142 Test #14: testAlignment ...................... Passed 0.20 sec + 9/142 Test #16: testOptimizer ...................... Passed 0.34 sec Start 24: graphmolqueryTest - 9/142 Test #16: testOptimizer ...................... Passed 0.26 sec + 10/142 Test #20: testDistGeom ....................... Passed 0.49 sec Start 25: graphmolMolOpsTest - 10/142 Test #20: testDistGeom ....................... Passed 0.36 sec + 11/142 Test #23: graphmolcpTest ..................... Passed 0.64 sec Start 26: graphmoltestCanon - 11/142 Test #26: graphmoltestCanon .................. Passed 0.07 sec + 12/142 Test #24: graphmolqueryTest .................. Passed 0.52 sec Start 27: graphmoltestChirality - 12/142 Test #23: graphmolcpTest ..................... Passed 0.42 sec + 13/142 Test #26: graphmoltestCanon .................. Passed 0.10 sec Start 28: graphmoltestPickler - 13/142 Test #24: graphmolqueryTest .................. Passed 0.50 sec + 14/142 Test #17: testUFFForceField .................. Passed 1.16 sec Start 29: graphmoltestPicklerGlobalSetting - 14/142 Test #29: graphmoltestPicklerGlobalSetting ... Passed 0.19 sec + 15/142 Test #27: graphmoltestChirality .............. Passed 0.40 sec Start 30: graphmolIterTest - 15/142 Test #17: testUFFForceField .................. Passed 0.91 sec + 16/142 Test #29: graphmoltestPicklerGlobalSetting ... Passed 0.25 sec Start 31: hanoiTest - 16/142 Test #21: pyDistGeom ......................... Passed 0.90 sec + 17/142 Test #30: graphmolIterTest ................... Passed 0.26 sec Start 32: graphmolMemTest1 - 17/142 Test #30: graphmolIterTest ................... Passed 0.20 sec + 18/142 Test #32: graphmolMemTest1 ................... Passed 0.07 sec Start 33: resMolSupplierTest - 18/142 Test #32: graphmolMemTest1 ................... Passed 0.11 sec + 19/142 Test #21: pyDistGeom ......................... Passed 2.72 sec Start 34: molBundleTest - 19/142 Test #27: graphmoltestChirality .............. Passed 0.64 sec + 20/142 Test #8: pySparseIntVect .................... Passed 3.12 sec Start 35: test-valgrind - 20/142 Test #34: molBundleTest ...................... Passed 0.16 sec + 21/142 Test #9: pyFPB .............................. Passed 3.10 sec Start 36: graphmolTestsCatch - 21/142 Test #35: test-valgrind ...................... Passed 0.16 sec + 22/142 Test #7: pyDiscreteValueVect ................ Passed 3.21 sec Start 37: testDepictor - 22/142 Test #7: pyDiscreteValueVect ................ Passed 1.77 sec + 23/142 Test #15: pyAlignment ........................ Passed 2.97 sec Start 38: pyDepictor - 23/142 Test #8: pySparseIntVect .................... Passed 1.77 sec + 24/142 Test #34: molBundleTest ...................... Passed 0.23 sec Start 39: smiTest1 - 24/142 Test #36: graphmolTestsCatch ................. Passed 0.30 sec + 25/142 Test #35: test-valgrind ...................... Passed 0.23 sec Start 40: smiTest2 - 25/142 Test #40: smiTest2 ........................... Passed 0.09 sec + 26/142 Test #36: graphmolTestsCatch ................. Passed 0.22 sec Start 41: cxsmilesTest - 26/142 Test #28: graphmoltestPickler ................ Passed 1.12 sec + 27/142 Test #40: smiTest2 ........................... Passed 0.13 sec Start 42: smaTest1 - 27/142 Test #15: pyAlignment ........................ Passed 1.79 sec + 28/142 Test #12: testPyGeometry ..................... Passed 3.41 sec Start 43: smiTestCatch - 28/142 Test #39: smiTest1 ........................... Passed 0.20 sec + 29/142 Test #28: graphmoltestPickler ................ Passed 2.44 sec Start 44: fileParsersTest1 - 29/142 Test #12: testPyGeometry ..................... Passed 1.96 sec + 30/142 Test #41: cxsmilesTest ....................... Passed 0.26 sec Start 45: testMolSupplier - 30/142 Test #9: pyFPB .............................. Passed 2.08 sec + 31/142 Test #43: smiTestCatch ....................... Passed 0.15 sec Start 46: testMolWriter - 31/142 Test #41: cxsmilesTest ....................... Passed 0.23 sec + 32/142 Test #44: fileParsersTest1 ................... Passed 0.20 sec Start 47: testTplParser - 32/142 Test #43: smiTestCatch ....................... Passed 0.25 sec + 33/142 Test #39: smiTest1 ........................... Passed 0.55 sec Start 48: testMol2ToMol - 33/142 Test #47: testTplParser ...................... Passed 0.20 sec + 34/142 Test #47: testTplParser ...................... Passed 0.22 sec Start 49: testSequence - 34/142 Test #44: fileParsersTest1 ................... Passed 0.38 sec + 35/142 Test #48: testMol2ToMol ...................... Passed 0.38 sec Start 50: testExtendedStereoParsing - 35/142 Test #48: testMol2ToMol ...................... Passed 0.24 sec + 36/142 Test #49: testSequence ....................... Passed 0.40 sec Start 51: fileParsersCatchTest - 36/142 Test #50: testExtendedStereoParsing .......... Passed 0.10 sec + 37/142 Test #50: testExtendedStereoParsing .......... Passed 0.24 sec Start 52: testSubstructMatch - 37/142 Test #49: testSequence ....................... Passed 0.23 sec + 38/142 Test #51: fileParsersCatchTest ............... Passed 0.25 sec Start 53: testReaction - 38/142 Test #51: fileParsersCatchTest ............... Passed 0.37 sec + 39/142 Test #42: smaTest1 ........................... Passed 1.69 sec Start 54: testReactionFingerprints - 39/142 Test #42: smaTest1 ........................... Passed 0.89 sec + 40/142 Test #33: resMolSupplierTest ................. Passed 3.73 sec Start 55: testEnumeration - 40/142 Test #45: testMolSupplier .................... Passed 0.96 sec + 41/142 Test #54: testReactionFingerprints ........... Passed 0.51 sec Start 56: rxnTestCatch - 41/142 Test #54: testReactionFingerprints ........... Passed 0.22 sec + 42/142 Test #45: testMolSupplier .................... Passed 2.09 sec Start 57: pyChemReactions - 42/142 Test #56: rxnTestCatch ....................... Passed 0.17 sec + 43/142 Test #56: rxnTestCatch ....................... Passed 0.23 sec Start 58: pyChemReactionEnumerations - 43/142 Test #37: testDepictor ....................... Passed 1.83 sec + 44/142 Test #19: pyForceFieldConstraints ............ Passed 5.85 sec Start 59: pyChemReactionSanitize - 44/142 Test #46: testMolWriter ...................... Passed 1.52 sec + 45/142 Test #46: testMolWriter ...................... Passed 2.50 sec Start 60: testChemTransforms - 45/142 Test #53: testReaction ....................... Passed 1.35 sec + 46/142 Test #37: testDepictor ....................... Passed 3.22 sec Start 61: testSubgraphs1 - 46/142 Test #1: testDict ........................... Passed 4.14 sec + 47/142 Test #53: testReaction ....................... Passed 1.74 sec Start 62: testSubgraphs2 - 47/142 Test #62: testSubgraphs2 ..................... Passed 0.14 sec + 48/142 Test #62: testSubgraphs2 ..................... Passed 0.11 sec Start 63: filterCatalogTest - 48/142 Test #6: pyBV ............................... Passed 4.18 sec + 49/142 Test #38: pyDepictor ......................... Passed 3.36 sec Start 64: pyFilterCatalog - 49/142 Test #60: testChemTransforms ................. Passed 0.56 sec + 50/142 Test #60: testChemTransforms ................. Passed 0.51 sec Start 65: testFragCatalog - 50/142 Test #38: pyDepictor ......................... Passed 2.45 sec + 51/142 Test #6: pyBV ............................... Passed 7.03 sec Start 66: pyFragCatalog - 51/142 Test #33: resMolSupplierTest ................. Passed 3.17 sec + 52/142 Test #52: testSubstructMatch ................. Passed 2.74 sec Start 67: testDescriptors - 52/142 Test #19: pyForceFieldConstraints ............ Passed 4.22 sec + 53/142 Test #1: testDict ........................... Passed 7.52 sec Start 68: testAUTOCORR2D - 53/142 Test #52: testSubstructMatch ................. Passed 2.05 sec + 54/142 Test #59: pyChemReactionSanitize ............. Passed 1.27 sec Start 69: pyMolDescriptors - 54/142 Test #63: filterCatalogTest .................. Passed 0.80 sec + 55/142 Test #61: testSubgraphs1 ..................... Passed 1.21 sec Start 70: pyMolDescriptors3D - 55/142 Test #59: pyChemReactionSanitize ............. Passed 1.77 sec + 56/142 Test #66: pyFragCatalog ...................... Passed 0.73 sec Start 71: testFingerprints - 56/142 Test #61: testSubgraphs1 ..................... Passed 1.52 sec + 57/142 Test #63: filterCatalogTest .................. Passed 1.46 sec Start 72: testFingerprintGenerators - 57/142 Test #66: pyFragCatalog ...................... Passed 1.25 sec + 58/142 Test #57: pyChemReactions .................... Passed 2.37 sec Start 73: pyTestGenerator - 58/142 Test #57: pyChemReactions .................... Passed 2.57 sec + 59/142 Test #73: pyTestGenerator .................... Passed 0.67 sec Start 74: testPartialCharges - 59/142 Test #74: testPartialCharges ................. Passed 0.08 sec + 60/142 Test #74: testPartialCharges ................. Passed 0.10 sec Start 75: pyPartialCharges - 60/142 Test #69: pyMolDescriptors ................... Passed 1.42 sec + 61/142 Test #70: pyMolDescriptors3D ................. Passed 1.29 sec Start 76: testMolTransforms - 61/142 Test #76: testMolTransforms .................. Passed 0.18 sec + 62/142 Test #76: testMolTransforms .................. Passed 0.16 sec Start 77: pyMolTransforms - 62/142 Test #70: pyMolDescriptors3D ................. Passed 1.32 sec + 63/142 Test #68: testAUTOCORR2D ..................... Passed 1.98 sec Start 78: testMMFFForceFieldHelpers - 63/142 Test #73: pyTestGenerator .................... Passed 1.06 sec + 64/142 Test #69: pyMolDescriptors ................... Passed 2.00 sec Start 79: testUFFForceFieldHelpers - 64/142 Test #68: testAUTOCORR2D ..................... Passed 2.34 sec + 65/142 Test #77: pyMolTransforms .................... Passed 1.00 sec Start 80: testCrystalForceField - 65/142 Test #77: pyMolTransforms .................... Passed 0.81 sec + 66/142 Test #75: pyPartialCharges ................... Passed 1.37 sec Start 81: pyForceFieldHelpers - 66/142 Test #80: testCrystalForceField .............. Passed 0.12 sec + 67/142 Test #80: testCrystalForceField .............. Passed 0.26 sec Start 82: testDistGeomHelpers - 67/142 Test #75: pyPartialCharges ................... Passed 1.43 sec + 68/142 Test #65: testFragCatalog .................... Passed 3.61 sec Start 83: pyDistGeomHelpers - 68/142 Test #81: pyForceFieldHelpers ................ Passed 1.58 sec + 69/142 Test #58: pyChemReactionEnumerations ......... Passed 5.15 sec Start 84: testMolAlign - 69/142 Test #72: testFingerprintGenerators .......... Passed 3.57 sec + 70/142 Test #81: pyForceFieldHelpers ................ Passed 1.39 sec Start 85: pyMolAlign - 70/142 Test #65: testFragCatalog .................... Passed 4.96 sec + 71/142 Test #72: testFingerprintGenerators .......... Passed 4.23 sec Start 86: testFeatures - 71/142 Test #86: testFeatures ....................... Passed 0.26 sec + 72/142 Test #86: testFeatures ....................... Passed 0.31 sec Start 87: pyChemicalFeatures - 72/142 Test #58: pyChemReactionEnumerations ......... Passed 7.29 sec + 73/142 Test #87: pyChemicalFeatures ................. Passed 1.01 sec Start 88: testShapeHelpers - 73/142 Test #87: pyChemicalFeatures ................. Passed 1.19 sec + 74/142 Test #88: testShapeHelpers ................... Passed 0.09 sec Start 89: pyShapeHelpers - 74/142 Test #88: testShapeHelpers ................... Passed 0.17 sec + 75/142 Test #89: pyShapeHelpers ..................... Passed 1.64 sec Start 90: testMolCatalog - 75/142 Test #90: testMolCatalog ..................... Passed 0.20 sec + 76/142 Test #90: testMolCatalog ..................... Passed 0.17 sec Start 91: pyMolCatalog - 76/142 Test #25: graphmolMolOpsTest ................. Passed 11.11 sec + 77/142 Test #25: graphmolMolOpsTest ................. Passed 14.89 sec Start 92: moldraw2DTest1 - 77/142 Test #89: pyShapeHelpers ..................... Passed 1.24 sec + 78/142 Test #91: pyMolCatalog ....................... Passed 1.06 sec Start 93: moldraw2DRxnTest1 - 78/142 Test #91: pyMolCatalog ....................... Passed 1.04 sec + 79/142 Test #93: moldraw2DRxnTest1 .................. Passed 0.19 sec Start 94: pyMolDraw2D - 79/142 Test #93: moldraw2DRxnTest1 .................. Passed 0.26 sec + 80/142 Test #94: pyMolDraw2D ........................ Passed 0.93 sec Start 95: testFMCS - 80/142 Test #94: pyMolDraw2D ........................ Passed 1.51 sec + 81/142 Test #95: testFMCS ........................... Passed 3.05 sec Start 96: pyFMCS - 81/142 Test #64: pyFilterCatalog .................... Passed 11.03 sec + 82/142 Test #64: pyFilterCatalog .................... Passed 15.34 sec Start 97: FMCStest - 82/142 Test #97: FMCStest ........................... Passed 0.09 sec + 83/142 Test #97: FMCStest ........................... Passed 0.12 sec Start 98: testMolHash - 83/142 Test #98: testMolHash ........................ Passed 0.37 sec + 84/142 Test #98: testMolHash ........................ Passed 0.35 sec Start 99: pyMolHash - 84/142 Test #95: testFMCS ........................... Passed 3.84 sec + 85/142 Test #96: pyFMCS ............................. Passed 2.16 sec Start 100: testMMPA - 85/142 Test #99: pyMolHash .......................... Passed 0.80 sec + 86/142 Test #67: testDescriptors .................... Passed 15.88 sec Start 101: pyMMPA - 86/142 Test #100: testMMPA ........................... Passed 0.52 sec + 87/142 Test #99: pyMolHash .......................... Passed 0.80 sec Start 102: testStructChecker - 87/142 Test #102: testStructChecker .................. Passed 0.24 sec + 88/142 Test #100: testMMPA ........................... Passed 0.51 sec Start 103: pyStructChecker - 88/142 Test #92: moldraw2DTest1 ..................... Passed 5.91 sec + 89/142 Test #102: testStructChecker .................. Passed 0.38 sec Start 104: testReducedGraphs - 89/142 Test #103: pyStructChecker .................... Passed 1.10 sec + 90/142 Test #104: testReducedGraphs .................. Passed 0.17 sec Start 105: pyReducedGraphs - 90/142 Test #104: testReducedGraphs .................. Passed 0.34 sec + 91/142 Test #103: pyStructChecker .................... Passed 0.51 sec Start 106: trajectoryTest - 91/142 Test #96: pyFMCS ............................. Passed 4.53 sec + 92/142 Test #92: moldraw2DTest1 ..................... Passed 8.23 sec Start 107: substructLibraryTest - 92/142 Test #105: pyReducedGraphs .................... Passed 0.91 sec + 93/142 Test #105: pyReducedGraphs .................... Passed 0.84 sec Start 108: pySubstructLibrary - 93/142 Test #67: testDescriptors .................... Passed 14.58 sec + 94/142 Test #106: trajectoryTest ..................... Passed 1.53 sec Start 109: testRGroupDecomp - 94/142 Test #106: trajectoryTest ..................... Passed 1.84 sec + 95/142 Test #107: substructLibraryTest ............... Passed 1.60 sec Start 110: pyRGroupDecomposition - 95/142 Test #107: substructLibraryTest ............... Passed 2.21 sec + 96/142 Test #109: testRGroupDecomp ................... Passed 0.82 sec Start 111: molInterchangeTest1 - 96/142 Test #109: testRGroupDecomp ................... Passed 1.12 sec + 97/142 Test #111: molInterchangeTest1 ................ Passed 0.16 sec Start 112: pyMolInterchange - 97/142 Test #111: molInterchangeTest1 ................ Passed 0.21 sec + 98/142 Test #110: pyRGroupDecomposition .............. Passed 0.97 sec Start 113: testSLNParse - 98/142 Test #113: testSLNParse ....................... Passed 0.34 sec + 99/142 Test #113: testSLNParse ....................... Passed 0.43 sec Start 114: pySLNParse - 99/142 Test #110: pyRGroupDecomposition .............. Passed 1.46 sec +100/142 Test #112: pyMolInterchange ................... Passed 0.84 sec Start 115: pyGraphMolWrap -100/142 Test #112: pyMolInterchange ................... Passed 1.05 sec +101/142 Test #114: pySLNParse ......................... Passed 0.84 sec Start 116: pyTestConformerWrap -101/142 Test #114: pySLNParse ......................... Passed 0.85 sec +102/142 Test #116: pyTestConformerWrap ................ Passed 1.48 sec Start 117: pyTestTrajectory -102/142 Test #116: pyTestConformerWrap ................ Passed 1.01 sec +103/142 Test #101: pyMMPA ............................. Passed 7.62 sec Start 118: pyTestThreads -103/142 Test #117: pyTestTrajectory ................... Passed 2.78 sec +104/142 Test #117: pyTestTrajectory ................... Passed 2.87 sec Start 119: molStandardizeTest -104/142 Test #119: molStandardizeTest ................. Passed 1.17 sec +105/142 Test #119: molStandardizeTest ................. Passed 0.46 sec Start 120: molNormalizeTest -105/142 Test #101: pyMMPA ............................. Passed 9.18 sec +106/142 Test #120: molNormalizeTest ................... Passed 0.09 sec Start 121: molValidateTest -106/142 Test #120: molNormalizeTest ................... Passed 0.23 sec +107/142 Test #121: molValidateTest .................... Passed 0.12 sec Start 122: molChargeTest -107/142 Test #121: molValidateTest .................... Passed 0.24 sec +108/142 Test #122: molChargeTest ...................... Passed 0.38 sec Start 123: molTautomerTest -108/142 Test #122: molChargeTest ...................... Passed 0.68 sec +109/142 Test #108: pySubstructLibrary ................. Passed 10.33 sec Start 124: molStandardizeSmallTest -109/142 Test #124: molStandardizeSmallTest ............ Passed 0.36 sec +110/142 Test #124: molStandardizeSmallTest ............ Passed 0.25 sec Start 125: molFragmentTest -110/142 Test #125: molFragmentTest .................... Passed 0.55 sec +111/142 Test #125: molFragmentTest .................... Passed 0.39 sec Start 126: pyMolStandardize -111/142 Test #126: pyMolStandardize ................... Passed 1.51 sec +112/142 Test #126: pyMolStandardize ................... Passed 1.57 sec Start 127: testQuery -112/142 Test #127: testQuery .......................... Passed 0.10 sec +113/142 Test #127: testQuery .......................... Passed 0.07 sec Start 128: testMatCalc -113/142 Test #128: testMatCalc ........................ Passed 0.04 sec +114/142 Test #128: testMatCalc ........................ Passed 0.03 sec Start 129: pyMatCalc -114/142 Test #123: molTautomerTest .................... Passed 4.67 sec +115/142 Test #129: pyMatCalc .......................... Passed 4.67 sec Start 130: testSimDivPickers -115/142 Test #130: testSimDivPickers .................. Passed 0.10 sec +116/142 Test #130: testSimDivPickers .................. Passed 0.21 sec Start 131: pySimDivPickers -116/142 Test #108: pySubstructLibrary ................. Passed 12.00 sec +117/142 Test #123: molTautomerTest .................... Passed 9.17 sec Start 132: pyRanker -117/142 Test #132: pyRanker ........................... Passed 0.83 sec +118/142 Test #71: testFingerprints ................... Passed 35.28 sec Start 133: testChemicalFeatures -118/142 Test #133: testChemicalFeatures ............... Passed 0.08 sec +119/142 Test #133: testChemicalFeatures ............... Passed 0.08 sec Start 134: pyFeatures -119/142 Test #129: pyMatCalc .......................... Passed 3.39 sec +120/142 Test #132: pyRanker ........................... Passed 0.88 sec Start 135: pythonTestDbCLI -120/142 Test #131: pySimDivPickers .................... Passed 2.02 sec +121/142 Test #134: pyFeatures ......................... Passed 0.67 sec Start 136: pythonTestDirML -121/142 Test #134: pyFeatures ......................... Passed 1.11 sec +122/142 Test #131: pySimDivPickers .................... Passed 2.44 sec Start 137: pythonTestDirDataStructs -122/142 Test #71: testFingerprints ................... Passed 27.85 sec +123/142 Test #137: pythonTestDirDataStructs ........... Passed 4.40 sec Start 138: pythonTestDirDbase -123/142 Test #138: pythonTestDirDbase ................. Passed 2.51 sec +124/142 Test #138: pythonTestDirDbase ................. Passed 2.12 sec Start 139: pythonTestDirSimDivFilters -124/142 Test #137: pythonTestDirDataStructs ........... Passed 3.96 sec +125/142 Test #139: pythonTestDirSimDivFilters ......... Passed 0.97 sec Start 140: pythonTestDirVLib -125/142 Test #139: pythonTestDirSimDivFilters ......... Passed 1.88 sec +126/142 Test #118: pyTestThreads ...................... Passed 22.44 sec Start 141: pythonTestDirChem -126/142 Test #140: pythonTestDirVLib .................. Passed 2.29 sec +127/142 Test #78: testMMFFForceFieldHelpers .......... Passed 44.42 sec Start 142: pythonTestSping -127/142 Test #142: pythonTestSping .................... Passed 3.28 sec -128/142 Test #78: testMMFFForceFieldHelpers .......... Passed 37.41 sec -129/142 Test #79: testUFFForceFieldHelpers ........... Passed 45.92 sec -130/142 Test #118: pyTestThreads ...................... Passed 31.45 sec -131/142 Test #55: testEnumeration .................... Passed 52.33 sec -132/142 Test #85: pyMolAlign ......................... Passed 54.96 sec -133/142 Test #18: testMMFFForceField ................. Passed 81.29 sec -134/142 Test #136: pythonTestDirML .................... Passed 54.34 sec -135/142 Test #115: pyGraphMolWrap ..................... Passed 66.49 sec -136/142 Test #135: pythonTestDbCLI .................... Passed 79.90 sec -137/142 Test #31: hanoiTest .......................... Passed 125.13 sec -138/142 Test #83: pyDistGeomHelpers .................. Passed 165.69 sec -139/142 Test #82: testDistGeomHelpers ................ Passed 310.12 sec -140/142 Test #22: graphmolTest1 ...................... Passed 362.95 sec -141/142 Test #84: testMolAlign ....................... Passed 418.90 sec -142/142 Test #141: pythonTestDirChem ..................***Failed 468.79 sec +128/142 Test #140: pythonTestDirVLib .................. Passed 2.03 sec +129/142 Test #142: pythonTestSping .................... Passed 3.77 sec +130/142 Test #79: testUFFForceFieldHelpers ........... Passed 51.18 sec +131/142 Test #55: testEnumeration .................... Passed 59.85 sec +132/142 Test #85: pyMolAlign ......................... Passed 76.87 sec +133/142 Test #18: testMMFFForceField ................. Passed 91.12 sec +134/142 Test #115: pyGraphMolWrap .....................***Failed 77.01 sec +..............{'int': 1000, 'double': 10000.123} +[02:07:31] SMARTS Parse Error: syntax error for input: 'fiib' +....[02:07:31] ERROR: Problems encountered parsing data fields +[02:07:31] ERROR: moving to the begining of the next molecule +[02:07:31] ERROR: Problems encountered parsing data fields +[02:07:31] ERROR: moving to the begining of the next molecule +[02:07:31] Spurious data before the first property will be ignored +[02:07:31] Property will be truncated after the first blank line +[02:07:31] Property will be truncated after the first blank line +[02:07:31] Property will be truncated after the first blank line +[02:07:31] ERROR: Problems encountered parsing data fields +[02:07:31] ERROR: moving to the begining of the next molecule +[02:07:31] ERROR: Problems encountered parsing data fields +[02:07:31] ERROR: moving to the begining of the next molecule +[02:07:31] Spurious data before the first property will be ignored +[02:07:31] Property will be truncated after the first blank line +[02:07:31] Property will be truncated after the first blank line +[02:07:31] Property will be truncated after the first blank line +[02:07:31] ERROR: Problems encountered parsing data fields +[02:07:31] ERROR: moving to the begining of the next molecule +[02:07:31] Property will be truncated after the first blank line +[02:07:31] ERROR: Problems encountered parsing data fields +[02:07:31] ERROR: moving to the begining of the next molecule +[02:07:31] Property will be truncated after the first blank line +.[02:07:31] SMILES Parse Error: syntax error for input: 'fail' +[02:07:31] ERROR: Smiles parse error on line 2 +[02:07:31] ERROR: Cannot create molecule from : 'fail' +>>> This may result in an infinite loop. It should finish almost instantly +<<< OK, it finished. +............[02:07:31] Explicit valence for atom # 1 C, 5, is greater than permitted +............[02:07:32] non-ring atom 0 marked aromatic +[02:07:32] non-ring atom 0 marked aromatic +[02:07:32] + +**** +Range Error +idx +Violation occurred on line 168 in file ./Code/GraphMol/ROMol.cpp +Failed Expression: 12 < 6 +**** + +[02:07:32] non-ring atom 0 marked aromatic +[02:07:32] non-ring atom 0 marked aromatic +[02:07:32] + +**** +Range Error +idx +Violation occurred on line 168 in file ./Code/GraphMol/ROMol.cpp +Failed Expression: 12 < 6 +**** + +...............[02:07:32] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count. +[02:07:32] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count. +..............[02:07:32] Can't kekulize mol. Unkekulized atoms: 0 1 2 3 4 + +[02:07:32] Explicit valence for atom # 1 C, 5, is greater than permitted +.....................................F.........[02:08:45] + +**** +Pre-condition Violation +no owner +Violation occurred on line 124 in file ./Code/GraphMol/Atom.h +Failed Expression: dp_mol +**** + +[02:08:45] + +**** +Pre-condition Violation +no owner +Violation occurred on line 124 in file ./Code/GraphMol/Atom.h +Failed Expression: dp_mol +**** + +[02:08:45] + +**** +Pre-condition Violation +no owner +Violation occurred on line 124 in file ./Code/GraphMol/Atom.h +Failed Expression: dp_mol +**** + +[02:08:45] + +**** +Pre-condition Violation +no owner +Violation occurred on line 124 in file ./Code/GraphMol/Atom.h +Failed Expression: dp_mol +**** + +[02:08:45] + +**** +Pre-condition Violation +no owner +Violation occurred on line 124 in file ./Code/GraphMol/Atom.h +Failed Expression: dp_mol +**** + +.....[02:08:45] + +**** +Range Error +atomIdx1 +Violation occurred on line 280 in file ./Code/GraphMol/RWMol.cpp +Failed Expression: 0 < 0 +**** + +........[02:08:45] + +**** +Range Error +idx +Violation occurred on line 168 in file ./Code/GraphMol/ROMol.cpp +Failed Expression: 3 < 1 +**** + +..[02:08:46] 1 +[02:08:46] 2 +[02:08:46] 1 +[02:08:46] 2 +.................[02:08:46] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname' +RDKit ERROR: [02:08:46] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname' +..[02:08:46] SMILES Parse Error: syntax error for input: 'error' +RDKit ERROR: [02:08:46] SMILES Parse Error: syntax error for input: 'error' +[02:08:46] SMILES Parse Error: syntax error for input: 'd' +RDKit ERROR: [02:08:46] SMILES Parse Error: syntax error for input: 'd' +[02:08:46] SMARTS Parse Error: syntax error for input: 'error' +RDKit ERROR: [02:08:46] SMARTS Parse Error: syntax error for input: 'error' +[02:08:46] SMARTS Parse Error: syntax error for input: 'd' +RDKit ERROR: [02:08:46] SMARTS Parse Error: syntax error for input: 'd' +..... +====================================================================== +FAIL: testCrambin (__main__.TestCase) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rough_test.py", line 3981, in testCrambin + self.assertEqual(matches, ((166, 167, 168), (298, 299, 300), (320, 321, 326))) +AssertionError: Tuples differ: ((166, 167, 168), (298, 299, 3... != ((166, 167, 168), (298, 299, 3... + +First differing element 2: +(320, 326, 321) +(320, 321, 326) + +- ((166, 167, 168), (298, 299, 300), (320, 326, 321)) +? ----- + ++ ((166, 167, 168), (298, 299, 300), (320, 321, 326)) +? +++++ + + +---------------------------------------------------------------------- +Ran 158 tests in 75.388s + +FAILED (failures=1) + +135/142 Test #136: pythonTestDirML .................... Passed 62.18 sec +136/142 Test #135: pythonTestDbCLI .................... Passed 73.97 sec +137/142 Test #31: hanoiTest .......................... Passed 130.68 sec +138/142 Test #83: pyDistGeomHelpers .................. Passed 157.87 sec +139/142 Test #22: graphmolTest1 ...................... Passed 219.20 sec +140/142 Test #82: testDistGeomHelpers ................ Passed 226.08 sec +141/142 Test #84: testMolAlign ....................... Passed 319.70 sec +142/142 Test #141: pythonTestDirChem ..................***Failed 371.58 sec ...... ---------------------------------------------------------------------- -Ran 6 tests in 0.691s +Ran 6 tests in 0.365s OK ...... ---------------------------------------------------------------------- -Ran 6 tests in 0.328s +Ran 6 tests in 0.162s OK -....[05:16:23] +....[02:07:59] **** Pre-condition Violation @@ -13479,32 +13673,32 @@ . ---------------------------------------------------------------------- -Ran 5 tests in 0.062s +Ran 5 tests in 0.055s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 0.053s +Ran 4 tests in 0.027s OK .. ---------------------------------------------------------------------- -Ran 2 tests in 0.105s +Ran 2 tests in 0.053s OK ...................... ---------------------------------------------------------------------- -Ran 22 tests in 0.262s +Ran 22 tests in 0.269s OK .....s.................ss ---------------------------------------------------------------------- -Ran 25 tests in 0.932s +Ran 25 tests in 0.983s OK (skipped=3) ..s ---------------------------------------------------------------------- -Ran 3 tests in 0.991s +Ran 3 tests in 0.646s OK (skipped=1) ..............................F.... @@ -13514,66 +13708,66 @@ Traceback (most recent call last): File "UnitTestMCS.py", line 331, in test_timeout self.assertTrue(t2 - t1 < 2, t2 - t1) -AssertionError: 2.31174898148 +AssertionError: 4.43866586685 ---------------------------------------------------------------------- -Ran 35 tests in 2.445s +Ran 35 tests in 4.593s FAILED (failures=1) .... ---------------------------------------------------------------------- -Ran 4 tests in 0.087s +Ran 4 tests in 0.111s OK . ---------------------------------------------------------------------- -Ran 1 test in 0.054s +Ran 1 test in 0.055s OK ....... ---------------------------------------------------------------------- -Ran 7 tests in 0.143s +Ran 7 tests in 0.157s OK ... ---------------------------------------------------------------------- -Ran 3 tests in 0.202s +Ran 3 tests in 0.228s OK .ss.ss....... ---------------------------------------------------------------------- -Ran 13 tests in 3.668s +Ran 13 tests in 3.468s OK (skipped=4) -............[05:18:34] WARNING: More than one matching pattern found - picking one -[05:18:34] WARNING: More than one matching pattern found - picking one -.[05:18:34] WARNING: More than one matching pattern found - picking one +............[02:09:58] WARNING: More than one matching pattern found - picking one +[02:09:58] WARNING: More than one matching pattern found - picking one +.[02:09:58] WARNING: More than one matching pattern found - picking one .. ---------------------------------------------------------------------- -Ran 15 tests in 109.539s +Ran 15 tests in 96.905s OK ........ ---------------------------------------------------------------------- -Ran 8 tests in 0.666s +Ran 8 tests in 0.429s OK -....[05:18:59] WARNING: not removing hydrogen atom without neighbors -[05:18:59] WARNING: not removing hydrogen atom without neighbors -[05:18:59] WARNING: not removing hydrogen atom without neighbors +....[02:10:15] WARNING: not removing hydrogen atom without neighbors +[02:10:15] WARNING: not removing hydrogen atom without neighbors +[02:10:15] WARNING: not removing hydrogen atom without neighbors ....... ---------------------------------------------------------------------- -Ran 11 tests in 20.995s +Ran 11 tests in 15.228s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 7.399s +Ran 4 tests in 5.740s OK ...... ---------------------------------------------------------------------- -Ran 6 tests in 1.736s +Ran 6 tests in 2.292s OK ...............s/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/PandasTools.py:394: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. @@ -13584,7 +13778,7 @@ if np.issubdtype(type(cell_value), float): ....... ---------------------------------------------------------------------- -Ran 24 tests in 22.538s +Ran 24 tests in 18.998s OK (skipped=1) .. @@ -13596,314 +13790,314 @@ from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign ../build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead. # This work was funded by Roche and generously donated to the free -............[05:20:33] WARNING: More than one matching pattern found - picking one -[05:20:33] WARNING: More than one matching pattern found - picking one +............[02:11:45] WARNING: More than one matching pattern found - picking one +[02:11:45] WARNING: More than one matching pattern found - picking one ........... ---------------------------------------------------------------------- -Ran 25 tests in 51.483s +Ran 25 tests in 37.200s OK .. ---------------------------------------------------------------------- -Ran 2 tests in 0.353s +Ran 2 tests in 0.327s OK ..s... ---------------------------------------------------------------------- -Ran 6 tests in 5.336s +Ran 6 tests in 3.443s OK (skipped=1) -.[05:20:43] WARNING: not removing hydrogen atom without neighbors -.[05:20:43] WARNING: not removing hydrogen atom without neighbors -.[05:20:43] WARNING: no name column found on line 1 -[05:20:44] WARNING: no name column found on line 2 -[05:20:44] WARNING: no name column found on line 3 -[05:20:44] WARNING: no name column found on line 4 -[05:20:44] WARNING: no name column found on line 5 -[05:20:44] WARNING: no name column found on line 6 -[05:20:44] WARNING: no name column found on line 7 -[05:20:44] WARNING: no name column found on line 8 -[05:20:44] WARNING: no name column found on line 9 -[05:20:44] 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-[05:20:44] WARNING: no name column found on line 215 -[05:20:44] WARNING: no name column found on line 216 +.[02:11:53] WARNING: not removing hydrogen atom without neighbors +.[02:11:53] WARNING: not removing hydrogen atom without neighbors +.[02:11:53] WARNING: no name column found on line 1 +[02:11:53] WARNING: no name column found on line 2 +[02:11:53] WARNING: no name column found on line 3 +[02:11:53] WARNING: no name column found on line 4 +[02:11:53] WARNING: no name column found on line 5 +[02:11:53] WARNING: no name column found on line 6 +[02:11:53] WARNING: no name column found on line 7 +[02:11:53] WARNING: no name column found on line 8 +[02:11:53] WARNING: no name column found on line 9 +[02:11:53] WARNING: no name column found on line 10 +[02:11:53] WARNING: no name column found on line 11 +[02:11:53] WARNING: no name column found on line 12 +[02:11:53] WARNING: no name column found on line 13 +[02:11:53] WARNING: no name column found on line 14 +[02:11:53] WARNING: no 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no name column found on line 109 +[02:11:53] WARNING: no name column found on line 110 +[02:11:53] WARNING: no name column found on line 111 +[02:11:53] WARNING: no name column found on line 112 +[02:11:53] WARNING: no name column found on line 113 +[02:11:53] WARNING: no name column found on line 114 +[02:11:53] WARNING: no name column found on line 115 +[02:11:53] WARNING: no name column found on line 116 +[02:11:53] WARNING: no name column found on line 117 +[02:11:53] WARNING: no name column found on line 118 +[02:11:53] WARNING: no name column found on line 119 +[02:11:53] WARNING: no name column found on line 120 +[02:11:53] WARNING: no name column found on line 121 +[02:11:53] WARNING: no name column found on line 122 +[02:11:53] WARNING: no name column found on line 123 +[02:11:53] WARNING: no name column found on line 124 +[02:11:53] WARNING: no name column found on line 125 +[02:11:53] WARNING: no name column found on line 126 +[02:11:53] WARNING: no name column found on line 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name column found on line 183 +[02:11:53] WARNING: no name column found on line 184 +[02:11:53] WARNING: no name column found on line 185 +[02:11:53] WARNING: no name column found on line 186 +[02:11:53] WARNING: no name column found on line 187 +[02:11:53] WARNING: no name column found on line 188 +[02:11:53] WARNING: no name column found on line 189 +[02:11:53] WARNING: no name column found on line 190 +[02:11:53] WARNING: no name column found on line 191 +[02:11:53] WARNING: no name column found on line 192 +[02:11:53] WARNING: no name column found on line 193 +[02:11:53] WARNING: no name column found on line 194 +[02:11:53] WARNING: no name column found on line 195 +[02:11:53] WARNING: no name column found on line 196 +[02:11:53] WARNING: no name column found on line 197 +[02:11:53] WARNING: no name column found on line 198 +[02:11:53] WARNING: no name column found on line 199 +[02:11:53] WARNING: no name column found on line 200 +[02:11:53] WARNING: no name column found on line 201 +[02:11:53] WARNING: no name column found on line 202 +[02:11:53] WARNING: no name column found on line 203 +[02:11:53] WARNING: no name column found on line 204 +[02:11:53] WARNING: no name column found on line 205 +[02:11:53] WARNING: no name column found on line 206 +[02:11:53] WARNING: no name column found on line 207 +[02:11:53] WARNING: no name column found on line 208 +[02:11:53] WARNING: no name column found on line 209 +[02:11:53] WARNING: no name column found on line 210 +[02:11:53] WARNING: no name column found on line 211 +[02:11:53] WARNING: no name column found on line 212 +[02:11:53] WARNING: no name column found on line 213 +[02:11:53] WARNING: no name column found on line 214 +[02:11:53] WARNING: no name column found on line 215 +[02:11:53] WARNING: no name column found on line 216 ...... ---------------------------------------------------------------------- -Ran 9 tests in 0.722s +Ran 9 tests in 0.431s OK .................. ---------------------------------------------------------------------- -Ran 18 tests in 6.445s +Ran 18 tests in 2.777s OK ... ---------------------------------------------------------------------- -Ran 3 tests in 0.377s +Ran 3 tests in 0.307s OK ........ ---------------------------------------------------------------------- -Ran 8 tests in 0.247s +Ran 8 tests in 0.070s OK .. ---------------------------------------------------------------------- -Ran 2 tests in 0.133s +Ran 2 tests in 0.199s OK .. ---------------------------------------------------------------------- -Ran 2 tests in 0.070s +Ran 2 tests in 0.047s OK . ---------------------------------------------------------------------- -Ran 1 test in 0.351s +Ran 1 test in 0.204s OK ........ ---------------------------------------------------------------------- -Ran 8 tests in 0.014s +Ran 8 tests in 0.008s OK ... ---------------------------------------------------------------------- -Ran 3 tests in 0.014s +Ran 3 tests in 0.015s OK ... ---------------------------------------------------------------------- -Ran 3 tests in 0.018s +Ran 3 tests in 0.003s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 0.037s +Ran 4 tests in 0.033s OK ....... ---------------------------------------------------------------------- -Ran 7 tests in 0.077s +Ran 7 tests in 0.034s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 0.088s +Ran 4 tests in 0.076s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 21.443s +Ran 4 tests in 11.977s OK .......... ---------------------------------------------------------------------- -Ran 10 tests in 0.373s +Ran 10 tests in 0.270s OK . @@ -13913,17 +14107,17 @@ OK .......... ---------------------------------------------------------------------- -Ran 10 tests in 0.011s +Ran 10 tests in 0.009s OK ..... ---------------------------------------------------------------------- -Ran 5 tests in 0.403s +Ran 5 tests in 0.682s OK ..................... ---------------------------------------------------------------------- -Ran 21 tests in 37.149s +Ran 21 tests in 24.395s OK . @@ -13931,7 +14125,7 @@ Ran 1 test in 0.000s OK -...[05:22:19] +...[02:12:51] **** Pre-condition Violation @@ -13942,56 +14136,56 @@ . ---------------------------------------------------------------------- -Ran 4 tests in 0.102s +Ran 4 tests in 0.107s OK .. ---------------------------------------------------------------------- -Ran 2 tests in 85.839s +Ran 2 tests in 61.986s OK .. ---------------------------------------------------------------------- -Ran 2 tests in 0.343s +Ran 2 tests in 0.250s OK ... ---------------------------------------------------------------------- -Ran 3 tests in 0.034s +Ran 3 tests in 0.066s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 0.047s +Ran 4 tests in 0.086s OK -.....[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors -[05:23:52] WARNING: not removing hydrogen atom without neighbors +.....[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors +[02:13:59] WARNING: not removing hydrogen atom without neighbors ..... ---------------------------------------------------------------------- -Ran 10 tests in 2.024s +Ran 10 tests in 1.496s OK ssssss.....s..... ---------------------------------------------------------------------- -Ran 17 tests in 0.611s +Ran 17 tests in 0.605s OK (skipped=7) s @@ -14001,40 +14195,41 @@ OK (skipped=1) .......... ---------------------------------------------------------------------- -Ran 10 tests in 5.307s +Ran 10 tests in 1.964s OK -..[05:24:05] SMARTS Parse Error: syntax error for input: 'boromicacid' -[05:24:05] SMARTS Parse Error: syntax error for input: 'carboxylicacid,acidchlroide' -[05:24:05] SMARTS Parse Error: syntax error for input: 'carboxyliccaid,acidchloride' -[05:24:05] reaction has no reactants -[05:24:05] reaction has no products -[05:24:05] initialization failed -[05:24:05] reaction has no reactants -[05:24:05] reaction has no products +..[02:14:06] SMARTS Parse Error: syntax error for input: 'boromicacid' +[02:14:06] SMARTS Parse Error: syntax error for input: 'carboxylicacid,acidchlroide' +[02:14:06] SMARTS Parse Error: syntax error for input: 'carboxyliccaid,acidchloride' +[02:14:06] reaction has no reactants +[02:14:06] reaction has no products +[02:14:06] initialization failed +[02:14:06] reaction has no reactants +[02:14:06] reaction has no products . ---------------------------------------------------------------------- -Ran 3 tests in 0.150s +Ran 3 tests in 0.099s OK .... ---------------------------------------------------------------------- -Ran 4 tests in 0.049s +Ran 4 tests in 0.033s OK !!! TEST FAILURE: python UnitTestMCS.py {} -99% tests passed, 1 tests failed out of 142 +99% tests passed, 2 tests failed out of 142 -Total Test time (real) = 506.84 sec +Total Test time (real) = 425.48 sec The following tests FAILED: + 115 - pyGraphMolWrap (Failed) 141 - pythonTestDirChem (Failed) Errors while running CTest make[2]: *** [Makefile:133: test] Error 8 make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -dh_auto_test: cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 returned exit code 2 +dh_auto_test: cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=-j15 returned exit code 2 make[1]: [debian/rules:106: override_dh_auto_test] Error 2 (ignored) make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' fakeroot debian/rules binary @@ -14043,7 +14238,7 @@ dh_prep -O--buildsystem=cmake -O--parallel dh_installdirs -O--buildsystem=cmake -O--parallel dh_auto_install -O--buildsystem=cmake -O--parallel - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/rdkit-201809.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/rdkit-201809.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/rdkit-201809.1+dfsg -B/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -14056,30 +14251,30 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend -[ 0%] Built target inchi_support +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= +[ 0%] Built target inchi_support make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build [ 1%] Built target hc make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'. @@ -14088,6 +14283,8 @@ make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend @@ -14096,8 +14293,6 @@ make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= @@ -14124,10 +14319,10 @@ make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build @@ -14140,49 +14335,49 @@ make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target RDBoost make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend [ 3%] Built target testRDValue -[ 4%] Built target testMatCalc -[ 5%] Built target testDict +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build +[ 4%] Built target testDict make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= +[ 5%] Built target testMatCalc [ 5%] Built target testMatrices make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 6%] Built target EigenSolvers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 6%] Built target testQuery -[ 7%] Built target EigenSolvers +[ 7%] Built target testQuery [ 7%] Built target Catalogs [ 7%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'. @@ -14190,12 +14385,12 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 7%] Built target rdBase [ 9%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend -[ 9%] Built target rdBase make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend @@ -14207,10 +14402,10 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= @@ -14219,18 +14414,18 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 10%] Built target testSimDivPickers make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build -[ 10%] Built target testSimDivPickers make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'. @@ -14242,11 +14437,11 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 12%] Built target InfoTheory -make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 12%] Built target InfoTheory +make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend [ 13%] Built target testMultiFPB [ 14%] Built target testDataStructs @@ -14264,10 +14459,10 @@ make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14287,36 +14482,36 @@ make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. +make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. +make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. +make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 15%] Built target testGrid -[ 16%] Built target testTransforms -[ 16%] Built target ChemicalFeatures +[ 15%] Built target ChemicalFeatures make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend -[ 16%] Built target Alignment +[ 15%] Built target testGrid +[ 15%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend +[ 16%] Built target testTransforms make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14341,11 +14536,11 @@ make[3]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 18%] Built target rdSimDivPickers +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build [ 18%] Built target testChemicalFeatures make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'. @@ -14373,9 +14568,6 @@ make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend @@ -14383,16 +14575,18 @@ make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend -[ 25%] Built target rdAlignment make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= @@ -14406,24 +14600,25 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= +[ 25%] Built target rdAlignment make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build +make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build -make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build +make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14457,37 +14652,37 @@ make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. +make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 26%] Built target MolCatalog +[ 25%] Built target SubstructMatch +make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= -[ 26%] Built target Subgraphs -[ 26%] Built target SubstructMatch -make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build +[ 25%] Built target Subgraphs make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= -[ 26%] Built target rdChemicalFeatures +[ 26%] Built target MolCatalog [ 27%] Built target rdqueries +[ 27%] Built target rdChemicalFeatures [ 28%] Built target SLNParse make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= @@ -14505,18 +14700,10 @@ make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend -make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= -[ 31%] Built target Optimizer -make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14530,11 +14717,16 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build +[ 31%] Built target Optimizer +make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14543,73 +14735,71 @@ make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 31%] Built target rdtrajectory -make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend +make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build +make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build +make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build [ 32%] Built target rdPartialCharges -make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend +make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Built target rdMolInterchange -make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend +make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 33%] Built target ShapeHelpers -make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 33%] Built target ShapeHelpers +make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend [ 34%] Built target Depictor -make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= +make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 35%] Built target smiTest2 -make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 35%] Built target smiTest2 +make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14617,62 +14807,60 @@ make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 35%] Built target graphmolcpTest -make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build +make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend [ 35%] Built target graphmolMemTest1 -make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend +make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend [ 36%] Built target graphmolIterTest -make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend -[ 37%] Built target graphmolqueryTest -make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend +make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 37%] Built target graphmolqueryTest +make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= +[ 37%] Built target graphmoltestCanon +make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build +[ 38%] Built target test-valgrind +make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= -[ 37%] Built target graphmoltestCanon -make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= -[ 38%] Built target test-valgrind -make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend -[ 38%] Built target smaTest1 -make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 39%] Built target ChemTransforms +make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend +[ 39%] Built target smaTest1 +make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= -[ 39%] Built target ChemTransforms -make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. +make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Built target FilterCatalog +make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14681,83 +14869,90 @@ make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build -[ 40%] Built target testSubgraphs1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 39%] Built target testSubgraphs1 +make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend +[ 39%] Built target testOptimizer make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Built target testOptimizer -[ 41%] Built target testSubgraphs2 +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 41%] Built target rdMolTransforms +[ 39%] Built target rdMolTransforms make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 41%] Built target testPartialCharges +[ 40%] Built target FilterCatalog +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build +[ 41%] Built target testSubgraphs2 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 41%] Built target testPartialCharges make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Built target rdSLNParse +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build [ 42%] Built target ReducedGraphs make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build [ 43%] Built target testSLNParse -[ 45%] Built target Fingerprints -make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend -make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 44%] Built target MolChemicalFeatures +make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= +[ 46%] Built target Fingerprints +make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend +make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= -[ 46%] Built target MolChemicalFeatures -make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 47%] Built target FragCatalog make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build +make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build +make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14769,7 +14964,8 @@ make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend -make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14784,85 +14980,72 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build [ 54%] Built target ForceField -make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend +make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 54%] Built target rdShapeHelpers +make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend [ 54%] Built target testReducedGraphs make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend -[ 54%] Built target rdShapeHelpers -make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 55%] Built target rdMolChemicalFeatures +make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Built target SubstructLibrary -make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend -[ 55%] Built target rdFingerprintGenerator -make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= -[ 56%] Built target rdMolChemicalFeatures -make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= +[ 56%] Built target SubstructLibrary +make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build +[ 56%] Built target rdFingerprintGenerator +make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build -[ 58%] Built target rdchem -make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14872,99 +15055,101 @@ make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Built target hanoiTest -make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Built target resMolSupplierTest -make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend -[ 59%] Built target molBundleTest -make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend +[ 56%] Built target hanoiTest +make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend +[ 57%] Built target resMolSupplierTest +make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Built target graphmoltestChirality -make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= +[ 57%] Built target molBundleTest +make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend +[ 57%] Built target graphmoltestChirality +make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend +[ 57%] Built target rdReducedGraphs +make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Built target graphmolTestsCatch -make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 57%] Built target graphmolMolOpsTest +make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= -[ 59%] Built target graphmolMolOpsTest +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build +[ 58%] Built target graphmoltestPickler +make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= +[ 58%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend -[ 60%] Built target graphmoltestPickler +[ 58%] Built target graphmolTestsCatch make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend -[ 60%] Built target graphmoltestPicklerGlobalSetting -make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend -[ 60%] Built target rdReducedGraphs -make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= -[ 60%] Built target smiTest1 -make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= +[ 60%] Built target rdchem +make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= [ 60%] Built target testDepictor -make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend +make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build +[ 60%] Built target smiTest1 +make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= [ 60%] Built target cxsmilesTest -make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend -[ 60%] Built target smiTestCatch -make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= +make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= +[ 60%] Built target smiTestCatch +make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Built target testMol2ToMol -make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend +make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -14974,589 +15159,527 @@ make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build +make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 60%] Built target testExtendedStereoParsing -make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend +make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build +make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build +make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build +[ 60%] Built target testExtendedStereoParsing +make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend +[ 60%] Built target testMol2ToMol +make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target fileParsersCatchTest -make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend +make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target testMolWriter -make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend +make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target testTplParser -make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend +make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= [ 62%] Built target testMolSupplier +make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend +[ 62%] Built target testSequence make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= -[ 62%] Built target testSequence -make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Built target fileParsersTest1 +make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend +[ 62%] Built target rdDepictor make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend +[ 62%] Built target testSubstructMatch +make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 63%] Built target testChemTransforms -make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend -[ 63%] Built target testSubstructMatch -make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= +[ 63%] Built target testChemTransforms +make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 63%] Built target rdDepictor +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build +[ 63%] Built target filterCatalogTest make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= -[ 63%] Built target filterCatalogTest -make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build +make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build +make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build [ 64%] Built target rdfiltercatalog -make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend +make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= +make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Built target testFragCatalog -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build -[ 65%] Built target testFingerprints make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Built target Descriptors -make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend -make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend -make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Built target rdfragcatalog -make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= +[ 64%] Built target testFragCatalog +make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend +[ 66%] Built target Descriptors +make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Built target testFingerprintGenerators -make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= -[ 68%] Built target testMolTransforms -make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Built target testFeatures +[ 66%] Built target testMolTransforms +make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend +[ 66%] Built target testFeatures +make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 68%] Built target MMPA +[ 67%] Built target testFingerprints +make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend +[ 67%] Built target MMPA +make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend +[ 67%] Built target testFingerprintGenerators make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend +[ 68%] Built target rdMolCatalog make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend -[ 69%] Built target rdMolCatalog +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= +[ 68%] Built target testMolCatalog +make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build +make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build +[ 69%] Built target rdfragcatalog make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build -[ 69%] Built target testMolCatalog +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build +[ 69%] Built target substructLibraryTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 69%] Built target molInterchangeTest1 -[ 69%] Built target substructLibraryTest [ 69%] Built target FMCS make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend -make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build -make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend [ 69%] Built target rdSubstructLibrary +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= +[ 69%] Built target molInterchangeTest1 +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build +[ 69%] Built target testAUTOCORR2D [ 71%] Built target rdmolfiles make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 72%] Built target ForceFieldHelpers -[ 72%] Built target rdMolDescriptors +[ 72%] Built target rdMMPA +[ 73%] Built target ForceFieldHelpers make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend -[ 72%] Built target testMMPA +[ 73%] Built target testMMPA make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend -[ 73%] Built target rdMMPA -[ 73%] Built target testDescriptors +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= -make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= +[ 74%] Built target MolHash +make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build +make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build +[ 74%] Built target testDescriptors +make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Built target MolAlign -make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend -make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 74%] Built target rdFMCS +make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= -[ 73%] Built target testUFFForceField -[ 74%] Built target rdForceField -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Built target FMCStest +[ 75%] Built target testFMCS make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 74%] Built target DistGeometry -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend -make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend -make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend -[ 75%] Built target graphmolTest1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= +[ 75%] Built target rdMolDescriptors +[ 75%] Built target RGroupDecomposition +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend +make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= -[ 75%] Built target rdForceFieldHelpers -[ 76%] Built target trajectoryTest -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build +make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build +make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. +make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. +make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. +make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target testDistGeom -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. +make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 76%] Built target testShapeHelpers -[ 77%] Built target DistGeomHelpers -[ 77%] Built target rdMolAlign -make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend -[ 77%] Built target DistGeom -make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend -make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= -make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend +make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build -make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend -make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= +[ 77%] Built target StructChecker +make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend +make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend +[ 80%] Built target ChemReactions +make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend +make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build -[ 77%] Built target RGroupDecomposition +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build -make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend +make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build -make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= +make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build +[ 80%] Built target DistGeometry +make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 77%] Built target testMMFFForceFieldHelpers -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build -[ 78%] Built target testMMFFForceField +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 78%] Built target testUFFForceFieldHelpers +[ 81%] Built target graphmolTest1 +make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend +[ 81%] Built target MolAlign +make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'. +make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 81%] Built target testMolHash +make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= -[ 78%] Built target testCrystalForceField -[ 78%] Built target testDistGeomHelpers -[ 79%] Built target testMolAlign -[ 79%] Built target testRGroupDecomp -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build -[ 80%] Built target rdDistGeom +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build +[ 81%] Built target rdForceFieldHelpers +make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 80%] Built target rdRGroupDecomposition -[ 80%] Built target rdFMCS +make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build +[ 82%] Built target rdForceField +make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= +[ 83%] Built target trajectoryTest +make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build +make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build -make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build +make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= +[ 83%] Built target testUFFForceField +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Built target MolHash -make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend -[ 81%] Built target testFMCS -make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 82%] Built target FMCStest -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 84%] Built target StructChecker -make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend -[ 84%] Built target testAUTOCORR2D -make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend -[ 87%] Built target ChemReactions -make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend -make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend -make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend -make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend -make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend -make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend -make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= +make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build +[ 84%] Built target rdMolHash +make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build +make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= +[ 84%] Built target testRGroupDecomp +make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build +make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build +make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build +make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build +make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build +[ 84%] Built target rdStructChecker +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build +[ 84%] Built target testStructChecker make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target testMolHash +[ 85%] Built target testReaction make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target rdMolHash make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target rdStructChecker +make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build +[ 86%] Built target testEnumeration +[ 86%] Built target testDistGeom make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build +[ 86%] Built target testReactionFingerprints make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target testStructChecker -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Built target rxnTestCatch -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. +make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build +[ 86%] Built target rxnTestCatch make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 89%] Built target testReaction -[ 89%] Built target testReactionFingerprints +make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 86%] Built target testShapeHelpers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Built target testEnumeration -[ 90%] Built target MolDraw2D +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 86%] Built target MolDraw2D make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend +[ 86%] Built target rdRGroupDecomposition +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -15565,28 +15688,66 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= +[ 87%] Built target DistGeomHelpers +make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend +make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend +make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend +make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend +make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend +make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target rdChemReactions +[ 88%] Built target rdChemReactions make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target DistGeom +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target rdMolAlign make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target MolStandardize +[ 92%] Built target MolStandardize make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend -make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend -make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend -make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend -make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -15595,36 +15756,68 @@ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target moldraw2DRxnTest1 +make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend +[ 92%] Built target rdMolDraw2D +make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= +make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 93%] Built target moldraw2DTest1 +make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 93%] Built target testCrystalForceField +make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend +[ 93%] Built target testUFFForceFieldHelpers +[ 93%] Built target testMMFFForceFieldHelpers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= +[ 94%] Built target testMMFFForceField +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build +[ 94%] Built target testDistGeomHelpers make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build -[ 96%] Built target moldraw2DTest1 +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build +[ 95%] Built target testMolAlign +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' @@ -15632,43 +15825,45 @@ make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 95%] Built target molValidateTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'. +make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target molTautomerTest +[ 97%] Built target rdDistGeom +[ 98%] Built target molChargeTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target molNormalizeTest +[ 99%] Built target molStandardizeTest +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'. +make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target molFragmentTest +[ 99%] Built target rdmolops +make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' +[ 99%] Built target molStandardizeSmallTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target molStandardizeTest -[ 97%] Built target molNormalizeTest -[ 98%] Built target molChargeTest -[ 98%] Built target molValidateTest -[ 98%] Built target rdMolDraw2D -[ 98%] Built target moldraw2DRxnTest1 -[ 99%] Built target molTautomerTest [100%] Built target rdMolStandardize -[100%] Built target molFragmentTest -[100%] Built target molStandardizeSmallTest -make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. -make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' -[100%] Built target rdmolops make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -17870,34 +18065,34 @@ dh_strip -O--buildsystem=cmake -O--parallel dh_makeshlibs -O--buildsystem=cmake -O--parallel dh_shlibdeps -O--buildsystem=cmake -O--parallel -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitOptimizer.so.1.2018.09.1 were not linked against libRDKitTrajectory.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libRDKitEigenSolvers.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libcoordgenlibs.so.1 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libboost_serialization.so.1.67.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitOptimizer.so.1.2018.09.1 were not linked against libRDKitTrajectory.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so were not linked against libcoordgenlibs.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so were not linked against libRDKitEigenSolvers.so.1 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so were not linked against libboost_serialization.so.1.67.0 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) dh_installdeb -O--buildsystem=cmake -O--parallel dh_gencontrol -O--buildsystem=cmake -O--parallel +dpkg-gencontrol: warning: Depends field of package rdkit-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package rdkit-data: substitution variable ${shlibs:Depends} used, but is not defined -dpkg-gencontrol: warning: package rdkit-data: substitution variable ${python:Depends} unused, but is defined -dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined +dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined -dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined -dpkg-gencontrol: warning: Depends field of package rdkit-doc: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined +dpkg-gencontrol: warning: package rdkit-data: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit-dev: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package rdkit-doc: substitution variable ${python:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake -O--parallel dh_builddeb -O--buildsystem=cmake -O--parallel -dpkg-deb: building package 'postgresql-11-rdkit-dbgsym' in '../postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_amd64.deb'. -dpkg-deb: building package 'rdkit-data' in '../rdkit-data_201809.1+dfsg-6_all.deb'. -dpkg-deb: building package 'postgresql-11-rdkit' in '../postgresql-11-rdkit_201809.1+dfsg-6_amd64.deb'. -dpkg-deb: building package 'rdkit-doc' in '../rdkit-doc_201809.1+dfsg-6_all.deb'. dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_201809.1+dfsg-6_amd64.deb'. +dpkg-deb: building package 'postgresql-11-rdkit' in '../postgresql-11-rdkit_201809.1+dfsg-6_amd64.deb'. +dpkg-deb: building package 'rdkit-data' in '../rdkit-data_201809.1+dfsg-6_all.deb'. dpkg-deb: building package 'python-rdkit-dbgsym' in '../python-rdkit-dbgsym_201809.1+dfsg-6_amd64.deb'. -dpkg-deb: building package 'librdkit1' in '../librdkit1_201809.1+dfsg-6_amd64.deb'. +dpkg-deb: building package 'postgresql-11-rdkit-dbgsym' in '../postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'librdkit1-dbgsym' in '../librdkit1-dbgsym_201809.1+dfsg-6_amd64.deb'. +dpkg-deb: building package 'rdkit-doc' in '../rdkit-doc_201809.1+dfsg-6_all.deb'. +dpkg-deb: building package 'librdkit1' in '../librdkit1_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'python-rdkit' in '../python-rdkit_201809.1+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../rdkit_201809.1+dfsg-6_amd64.changes @@ -17906,12 +18101,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3948745/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3948745/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2033627 and its subdirectories -I: Current time: Mon Jan 16 05:43:18 -12 2023 -I: pbuilder-time-stamp: 1673890998 +I: removing directory /srv/workspace/pbuilder/3948745 and its subdirectories +I: Current time: Wed Dec 15 02:31:10 +14 2021 +I: pbuilder-time-stamp: 1639485070