Diff of the two buildlogs: -- --- b1/build.log 2020-12-12 01:31:25.537253093 +0000 +++ b2/build.log 2020-12-12 01:32:32.835172310 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jan 13 19:53:39 -12 2022 -I: pbuilder-time-stamp: 1642146819 +I: Current time: Sat Dec 12 15:31:29 +14 2020 +I: pbuilder-time-stamp: 1607736689 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Mon Jan 28 08:15:43 2019 -12 +gpgv: Signature made Tue Jan 29 10:15:43 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -31,136 +31,170 @@ dpkg-source: info: applying no_march.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/9348/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/53285/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/53285/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/53285/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='fa6485655f27443880a5a5f6003f3a9f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='9348' - PS1='# ' - PS2='> ' + INVOCATION_ID=c00d2ef7e4fa465c8d8c506cb4313fc0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=53285 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fKsadL7mm6/pbuilderrc_k48j --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fKsadL7mm6/b1 --logfile b1/build.log spoa_1.1.5-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.fKsadL7mm6/pbuilderrc_o92o --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.fKsadL7mm6/b2 --logfile b2/build.log spoa_1.1.5-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Jan 9 02:47 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/9348/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Dec 12 15:31 sh -> bash + lrwxrwxrwx 1 root root 4 Dec 7 22:26 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/53285/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -272,7 +306,7 @@ Get: 62 http://deb.debian.org/debian buster/main amd64 libbioparser-dev all 1.2.1-1 [5608 B] Get: 63 http://deb.debian.org/debian buster/main amd64 libgtest-dev amd64 1.8.1-3 [223 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 rename all 1.10-1 [17.2 kB] -Fetched 29.9 MB in 0s (67.1 MB/s) +Fetched 29.9 MB in 1s (21.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -553,7 +587,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/spoa-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/spoa-1.1.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 1.1.5-1 dpkg-buildpackage: info: source distribution unstable @@ -590,7 +624,7 @@ -- Build files have been written to: /build/spoa-1.1.5/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/spoa-1.1.5' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/spoa-1.1.5 -B/build/spoa-1.1.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -599,33 +633,33 @@ make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -cd /build/spoa-1.1.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-1.1.5 /build/spoa-1.1.5 /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= -make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' cd /build/spoa-1.1.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-1.1.5 /build/spoa-1.1.5 /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake --color= -Scanning dependencies of target spoa_static +make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' +cd /build/spoa-1.1.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-1.1.5 /build/spoa-1.1.5 /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= Scanning dependencies of target spoa make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build +make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' +Scanning dependencies of target spoa_static make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build +make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -[ 6%] Building CXX object CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o -/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o -c /build/spoa-1.1.5/src/simd_alignment_engine.cpp -[ 12%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/spoa-1.1.5/src/alignment_engine.cpp -[ 18%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o -/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/spoa-1.1.5/src/graph.cpp -[ 25%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -[ 31%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/spoa-1.1.5/src/sisd_alignment_engine.cpp +[ 6%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o +[ 12%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -Dspoa_EXPORTS -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/spoa-1.1.5/src/alignment_engine.cpp -[ 37%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o -/usr/bin/c++ -Dspoa_EXPORTS -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/spoa-1.1.5/src/graph.cpp -[ 43%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -Dspoa_EXPORTS -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/spoa-1.1.5/src/sisd_alignment_engine.cpp -[ 50%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o +[ 18%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o +/usr/bin/c++ -Dspoa_EXPORTS -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/spoa-1.1.5/src/graph.cpp +[ 25%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o /usr/bin/c++ -Dspoa_EXPORTS -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o -c /build/spoa-1.1.5/src/simd_alignment_engine.cpp +[ 31%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o +/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/spoa-1.1.5/src/alignment_engine.cpp +[ 37%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o +[ 43%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o +/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/spoa-1.1.5/src/graph.cpp +[ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o +/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/spoa-1.1.5/src/sisd_alignment_engine.cpp +/usr/bin/c++ -I/build/spoa-1.1.5/include -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o -c /build/spoa-1.1.5/src/simd_alignment_engine.cpp /build/spoa-1.1.5/src/simd_alignment_engine.cpp: In function 'std::unique_ptr spoa::createSimdAlignmentEngine(spoa::AlignmentType, int8_t, int8_t, int8_t)': /build/spoa-1.1.5/src/simd_alignment_engine.cpp:293:19: warning: unused parameter 'alignment_type' [-Wunused-parameter] AlignmentType alignment_type, int8_t match, int8_t mismatch, int8_t gap) { @@ -694,19 +728,12 @@ /build/spoa-1.1.5/src/simd_alignment_engine.cpp:500:70: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::align_sequence_with_graph(const char* sequence, ~~~~~~~~~~~~^~~~~~~~ -[ 56%] Linking CXX static library lib/libspoa_static.a -/usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake -/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 -[ 62%] Linking CXX shared library lib/libspoa.so +[ 56%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 -/usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -/usr/bin/ranlib lib/libspoa_static.a -make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.1.1.5 -o lib/libspoa.so.1.1.5 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -[ 62%] Built target spoa_static /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.1.1.5 lib/libspoa.so.1.1.5 lib/libspoa.so make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -[ 62%] Built target spoa +[ 56%] Built target spoa make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/depend make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' @@ -717,18 +744,25 @@ make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/build Scanning dependencies of target spoa_test -make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' +[ 62%] Building CXX object CMakeFiles/spoa_bin.dir/src/main.cpp.o +/usr/bin/c++ -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -I/build/spoa-1.1.5/include -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_bin.dir/src/main.cpp.o -c /build/spoa-1.1.5/src/main.cpp [ 68%] Building CXX object CMakeFiles/spoa_bin.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -I/build/spoa-1.1.5/include -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_bin.dir/src/sequence.cpp.o -c /build/spoa-1.1.5/src/sequence.cpp [ 75%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -[ 81%] Building CXX object CMakeFiles/spoa_test.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -I/build/spoa-1.1.5/include -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/spoa-1.1.5/test/spoa_test.cpp +/usr/bin/c++ -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -I/build/spoa-1.1.5/include -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_bin.dir/src/sequence.cpp.o -c /build/spoa-1.1.5/src/sequence.cpp +[ 81%] Building CXX object CMakeFiles/spoa_test.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -I/build/spoa-1.1.5/include -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_test.dir/src/sequence.cpp.o -c /build/spoa-1.1.5/src/sequence.cpp -[ 87%] Building CXX object CMakeFiles/spoa_bin.dir/src/main.cpp.o -/usr/bin/c++ -I/build/spoa-1.1.5/obj-x86_64-linux-gnu/config -I/build/spoa-1.1.5/src -I/build/spoa-1.1.5/include -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_bin.dir/src/main.cpp.o -c /build/spoa-1.1.5/src/main.cpp +[ 87%] Linking CXX static library lib/libspoa_static.a +/usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake +/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 +/usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o +/usr/bin/ranlib lib/libspoa_static.a +make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' +[ 87%] Built target spoa_static [ 93%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_bin.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/spoa-1.1.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/spoa_bin.dir/src/sequence.cpp.o CMakeFiles/spoa_bin.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/spoa-1.1.5/obj-x86_64-linux-gnu/lib: lib/libspoa.so.1.1.5 -lz @@ -757,33 +791,33 @@ [----------] 12 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.LocalConsensus -[ OK ] SpoaAlignmentTest.LocalConsensus (255 ms) +[ OK ] SpoaAlignmentTest.LocalConsensus (248 ms) [ RUN ] SpoaAlignmentTest.LocalConsensusWithQualities -[ OK ] SpoaAlignmentTest.LocalConsensusWithQualities (232 ms) +[ OK ] SpoaAlignmentTest.LocalConsensusWithQualities (250 ms) [ RUN ] SpoaAlignmentTest.GlobalConsensus -[ OK ] SpoaAlignmentTest.GlobalConsensus (181 ms) +[ OK ] SpoaAlignmentTest.GlobalConsensus (210 ms) [ RUN ] SpoaAlignmentTest.GlobalConsensusWithQualities -[ OK ] SpoaAlignmentTest.GlobalConsensusWithQualities (195 ms) +[ OK ] SpoaAlignmentTest.GlobalConsensusWithQualities (200 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConsensus -[ OK ] SpoaAlignmentTest.SemiGlobalConsensus (234 ms) +[ OK ] SpoaAlignmentTest.SemiGlobalConsensus (223 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConsensusWithQualities -[ OK ] SpoaAlignmentTest.SemiGlobalConsensusWithQualities (242 ms) +[ OK ] SpoaAlignmentTest.SemiGlobalConsensusWithQualities (204 ms) [ RUN ] SpoaAlignmentTest.LocalMSA -[ OK ] SpoaAlignmentTest.LocalMSA (264 ms) +[ OK ] SpoaAlignmentTest.LocalMSA (236 ms) [ RUN ] SpoaAlignmentTest.LocalMSAWithQualities -[ OK ] SpoaAlignmentTest.LocalMSAWithQualities (257 ms) +[ OK ] SpoaAlignmentTest.LocalMSAWithQualities (229 ms) [ RUN ] SpoaAlignmentTest.GlobalMSA -[ OK ] SpoaAlignmentTest.GlobalMSA (227 ms) +[ OK ] SpoaAlignmentTest.GlobalMSA (198 ms) [ RUN ] SpoaAlignmentTest.GlobalMSAWithQualities -[ OK ] SpoaAlignmentTest.GlobalMSAWithQualities (218 ms) +[ OK ] SpoaAlignmentTest.GlobalMSAWithQualities (198 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalMSA -[ OK ] SpoaAlignmentTest.SemiGlobalMSA (230 ms) +[ OK ] SpoaAlignmentTest.SemiGlobalMSA (220 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalMSAWithQualities -[ OK ] SpoaAlignmentTest.SemiGlobalMSAWithQualities (228 ms) -[----------] 12 tests from SpoaAlignmentTest (2764 ms total) +[ OK ] SpoaAlignmentTest.SemiGlobalMSAWithQualities (214 ms) +[----------] 12 tests from SpoaAlignmentTest (2630 ms total) [----------] Global test environment tear-down -[==========] 14 tests from 2 test cases ran. (2766 ms total) +[==========] 14 tests from 2 test cases ran. (2632 ms total) [ PASSED ] 14 tests. `find . -name spoa | grep bin` test/data/sample.fastq Consensus (496) @@ -795,7 +829,7 @@ dh_testroot dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/spoa-1.1.5/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/spoa-1.1.5/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/spoa-1.1.5 -B/build/spoa-1.1.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/progress.marks @@ -808,32 +842,32 @@ make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' cd /build/spoa-1.1.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-1.1.5 /build/spoa-1.1.5 /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build +make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/spoa_static.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/spoa.dir/build'. make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build +make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/spoa.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/spoa_static.dir/build'. make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -[ 31%] Built target spoa_static -[ 62%] Built target spoa +[ 31%] Built target spoa make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/depend make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend +[ 62%] Built target spoa_static make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' cd /build/spoa-1.1.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-1.1.5 /build/spoa-1.1.5 /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/spoa_bin.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' cd /build/spoa-1.1.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-1.1.5 /build/spoa-1.1.5 /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu /build/spoa-1.1.5/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build -make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/spoa_test.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/spoa_bin.dir/build'. +make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' +make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/spoa_bin.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/spoa_test.dir/build'. make[3]: Leaving directory '/build/spoa-1.1.5/obj-x86_64-linux-gnu' [ 81%] Built target spoa_bin [100%] Built target spoa_test @@ -902,22 +936,24 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'spoa' in '../spoa_1.1.5-1_amd64.deb'. -dpkg-deb: building package 'libspoa1.1.5' in '../libspoa1.1.5_1.1.5-1_amd64.deb'. dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_1.1.5-1_amd64.deb'. -dpkg-deb: building package 'libspoa1.1.5-dbgsym' in '../libspoa1.1.5-dbgsym_1.1.5-1_amd64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_1.1.5-1_amd64.deb'. +dpkg-deb: building package 'libspoa1.1.5-dbgsym' in '../libspoa1.1.5-dbgsym_1.1.5-1_amd64.deb'. +dpkg-deb: building package 'libspoa1.1.5' in '../libspoa1.1.5_1.1.5-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../spoa_1.1.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/53285/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/53285/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/9348 and its subdirectories -I: Current time: Thu Jan 13 19:54:32 -12 2022 -I: pbuilder-time-stamp: 1642146872 +I: removing directory /srv/workspace/pbuilder/53285 and its subdirectories +I: Current time: Sat Dec 12 15:32:32 +14 2020 +I: pbuilder-time-stamp: 1607736752