Diff of the two buildlogs: -- --- b1/build.log 2021-07-15 17:43:46.148690346 +0000 +++ b2/build.log 2021-07-15 18:13:12.402444547 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Aug 17 12:00:52 -12 2022 -I: pbuilder-time-stamp: 1660780852 +I: Current time: Fri Jul 16 07:43:48 +14 2021 +I: pbuilder-time-stamp: 1626371028 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -17,7 +17,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Fri Jun 29 02:16:14 2018 -12 +gpgv: Signature made Sat Jun 30 04:16:14 2018 +14 gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./stimfit_0.15.8-1.dsc @@ -26,136 +26,170 @@ dpkg-source: info: unpacking stimfit_0.15.8-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13715/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/57276/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/57276/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/57276/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c9d3e87a37134f67820c17704e8966a9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13715' - PS1='# ' - PS2='> ' + INVOCATION_ID=00c8318a99914fd4b17bec110c15641d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=57276 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.lEAI6pW4Ig/pbuilderrc_EHhK --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.lEAI6pW4Ig/b1 --logfile b1/build.log stimfit_0.15.8-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.lEAI6pW4Ig/pbuilderrc_3b4v --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.lEAI6pW4Ig/b2 --logfile b2/build.log stimfit_0.15.8-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 5.10.0-0.bpo.7-amd64 #1 SMP Debian 5.10.40-1~bpo10+1 (2021-06-04) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5116 - -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat - -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown - -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp - -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash - -rwxr-xr-x 1 root root 109408 Feb 28 2019 date - -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd - -rwxr-xr-x 1 root root 93744 Feb 28 2019 df - -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir - -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 35424 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln - -rwxr-xr-x 1 root root 56760 Jul 26 2018 login - -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls - -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 43008 Jan 9 2019 more - -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount - -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm - -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 9 02:46 sh -> dash - -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty - -rwsr-xr-x 1 root root 63568 Jan 9 2019 su - -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync - -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar - -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch - -rwxr-xr-x 1 root root 35424 Feb 28 2019 true - -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount - -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/13715/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat + -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown + -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp + -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash + -rwxr-xr-x 1 root root 109408 Mar 1 2019 date + -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd + -rwxr-xr-x 1 root root 93744 Mar 1 2019 df + -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir + -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 35424 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount + -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln + -rwxr-xr-x 1 root root 56760 Jul 27 2018 login + -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls + -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 43008 Jan 10 2019 more + -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount + -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm + -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 16 07:43 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 7 22:24 sh.distrib -> dash + -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty + -rwsr-xr-x 1 root root 63568 Jan 10 2019 su + -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync + -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar + -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch + -rwxr-xr-x 1 root root 35424 Mar 1 2019 true + -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server + -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount + -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/57276/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -531,7 +565,7 @@ Get: 300 http://deb.debian.org/debian buster/main amd64 python-wxgtk3.0-dev all 3.0.2.0+dfsg-8 [531 kB] Get: 301 http://deb.debian.org/debian buster/main amd64 swig3.0 amd64 3.0.12-2 [1397 kB] Get: 302 http://deb.debian.org/debian buster/main amd64 swig amd64 3.0.12-2 [310 kB] -Fetched 173 MB in 2s (75.3 MB/s) +Fetched 173 MB in 5s (35.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) @@ -1792,7 +1826,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/stimfit-0.15.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/stimfit-0.15.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package stimfit dpkg-buildpackage: info: source version 0.15.8-1 dpkg-buildpackage: info: source distribution unstable @@ -2223,8 +2257,8 @@ CC libbiosiglite_la-sopen_abf_read.lo CC libbiosiglite_la-sopen_alpha_read.lo CC libbiosiglite_la-sopen_axg_read.lo - CC libbiosiglite_la-sopen_heka_read.lo CC libbiosiglite_la-sopen_cfs_read.lo + CC libbiosiglite_la-sopen_heka_read.lo CC libbiosiglite_la-sopen_igor.lo CC libbiosiglite_la-sopen_scp_read.lo CXX libbiosiglite_la-scp-decode.lo @@ -2236,7 +2270,6 @@ CC libbiosiglite_la-biosig-network.lo CC libbiosiglite_la-biosig-HL7aECG-stub.lo CC libbiosiglite_la-gdftime.lo - CC libbiosiglite_la-mdc_ecg_codes.lo biosig4c++/t210/sopen_alpha_read.c: In function 'sopen_alpha_read': biosig4c++/t210/sopen_alpha_read.c:380:6: warning: implicit declaration of function 'FreeTextEvent' [-Wimplicit-function-declaration] FreeTextEvent(hdr, n, t4); @@ -2244,10 +2277,6 @@ biosig4c++/t210/sopen_alpha_read.c:532:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] hdr->FileName = FileName; ^ -biosig4c++/t210/sopen_cfs_read.c: In function 'sopen_cfs_read': -biosig4c++/t210/sopen_cfs_read.c:661:8: warning: implicit declaration of function 'FreeTextEvent' [-Wimplicit-function-declaration] - FreeTextEvent(hdr, hdr->EVENT.N, Desc); - ^~~~~~~~~~~~~ biosig4c++/t210/sopen_axg_read.c: In function 'sopen_axg_read': biosig4c++/t210/sopen_axg_read.c:612:3: warning: implicit declaration of function 'strptime'; did you mean 'strftime'? [-Wimplicit-function-declaration] strptime(strstr(Notes,"Created on ")+11, "%a %b %d %Y", &T); @@ -2257,6 +2286,10 @@ biosig4c++/t210/sopen_abf_read.c:544:4: warning: implicit declaration of function 'FreeTextEvent' [-Wimplicit-function-declaration] FreeTextEvent(hdr, k+n1, (char*)(abftag+4)); ^~~~~~~~~~~~~ +biosig4c++/t210/sopen_cfs_read.c: In function 'sopen_cfs_read': +biosig4c++/t210/sopen_cfs_read.c:661:8: warning: implicit declaration of function 'FreeTextEvent' [-Wimplicit-function-declaration] + FreeTextEvent(hdr, hdr->EVENT.N, Desc); + ^~~~~~~~~~~~~ In file included from biosig4c++/t210/sopen_heka_read.c:29: biosig4c++/t210/../biosig.h:549:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); @@ -2269,6 +2302,13 @@ if (VERBOSE_LEVEL>7) fprintf(stdout,"%s (line %i) %s(...): %i bytes read\n",__FILE__,__LINE__,__func__, count); ~^ ~~~~~ %li +In file included from biosig4c++/test0/sandbox.c:32: +biosig4c++/test0/../biosig.h:549:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] + ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); + ^~~~~~~~~~~~~~~~~~~~~~~~ +biosig4c++/test0/../biosig.h:528:19: note: declared here + struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ + ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from biosig4c++/biosig2.c:28: biosig4c++/biosig.h:549:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); @@ -2285,13 +2325,6 @@ fprintf(stderr,"Error in function %f: total length of name too large (%i > %i)\n",__func__,len1+len2+len3+2,MAX_LENGTH_NAME); ~^ ~~~~~~~~~~~~~~~~ %li -In file included from biosig4c++/test0/sandbox.c:32: -biosig4c++/test0/../biosig.h:549:67: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] - ATT_DEPREC int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot); - ^~~~~~~~~~~~~~~~~~~~~~~~ -biosig4c++/test0/../biosig.h:528:19: note: declared here - struct ATT_DEPREC biosig_annotation_struct { /* this structure is used for annotations */ - ^~~~~~~~~~~~~~~~~~~~~~~~ biosig4c++/biosig2.c: At top level: biosig4c++/biosig2.c:841:56: warning: 'biosig_annotation_struct' is deprecated [-Wdeprecated-declarations] int biosig_get_annotation(int handle, size_t n, struct biosig_annotation_struct *annot) { @@ -2663,7 +2696,6 @@ biosig4c++/t210/scp-decode.cpp:118:49: note: declared here __attribute__ ((deprecated)) extern const char *B4C_ERRMSG; ^~~~~~~~~~ -biosig4c++/biosig.c: In function 'lcm': biosig4c++/t210/scp-decode.cpp: In instantiation of 'void ReadByte(t1&) [with t1 = signed char]': biosig4c++/t210/scp-decode.cpp:675:18: required from here biosig4c++/t210/scp-decode.cpp:278:14: warning: 'B4C_ERRNUM' is deprecated [-Wdeprecated-declarations] @@ -2706,6 +2738,7 @@ biosig4c++/t210/scp-decode.cpp:118:49: note: declared here __attribute__ ((deprecated)) extern const char *B4C_ERRMSG; ^~~~~~~~~~ +biosig4c++/biosig.c: In function 'lcm': biosig4c++/biosig.c:361:3: warning: 'B4C_ERRNUM' is deprecated [-Wdeprecated-declarations] B4C_ERRNUM = B4C_UNSPECIFIC_ERROR; ^~~~~~~~~~ @@ -2823,10 +2856,11 @@ strptime(val,"%d/%m/%Y %T",&T); ^~~~~~~~ strftime - CC libbiosiglite_la-physicalunits.lo biosig4c++/biosig.c:7530:5: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buf,sz,1,fid); ^~~~~~~~~~~~~~~~~~~ + CC libbiosiglite_la-mdc_ecg_codes.lo + CC libbiosiglite_la-physicalunits.lo biosig4c++/biosig.c: In function 'getfiletype': biosig4c++/biosig.c:1639:12: warning: '__builtin_memcmp_eq' reading 11 bytes from a region of size 10 [-Wstringop-overflow=] || !memcmp(hdr->AS.Header+307, "E\x00\x00\x00\x00\x00\x00\x00DAT", 11) @@ -2861,22 +2895,21 @@ make[4]: Leaving directory '/build/stimfit-0.15.8/src/libbiosiglite' Making all in libstfio make[4]: Entering directory '/build/stimfit-0.15.8/src/libstfio' - CXX section.lo CXX channel.lo + CXX section.lo CXX recording.lo CXX stfio.lo CXX cfslib.lo CC cfs.lo CXX hdf5lib.lo - CXX abffiles.lo CXX abflib.lo + CXX abffiles.lo CXX csynch.lo CXX filedesc.lo CXX FileReadCache.lo CXX FileIO.lo CXX abfheadr.lo CXX abfhwave.lo - CXX Oldheadr.lo ./abf/axon/AxAbfFio32/abfheadr.cpp: In function 'void ABFH_Initialize(ABFFileHeader*)': ./abf/axon/AxAbfFio32/abfheadr.cpp:65:38: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABFFileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] memset(&NewFH, '\0', sizeof(NewFH)); @@ -2908,9 +2941,9 @@ ./abf/axon/AxAbfFio32/abfheadr.h:560:8: note: 'struct ABFFileHeader' declared here struct ABFFileHeader // The total header length = 6144 bytes. ^~~~~~~~~~~~~ + CXX Oldheadr.lo CXX abfutil.lo CXX msbincvt.lo - CXX unix.lo ./recording.cpp: In constructor 'Recording::Recording()': ./recording.cpp:24:21: warning: 'Recording::time0' is deprecated [-Wdeprecated-declarations] : ChannelArray(0) @@ -3365,6 +3398,7 @@ ./stfio.cpp:433:40: warning: catching polymorphic type 'const class std::out_of_range' by value [-Wcatch-value=] catch (const std::out_of_range e) { ^ + CXX unix.lo CXX abferror.lo CXX axatffio32.lo CXX fileio2.lo @@ -3374,9 +3408,6 @@ CXX atflib.lo CXX axglib.lo CXX AxoGraph_ReadWrite.lo - CXX fileUtils.lo - CXX stringUtils.lo - CXX byteswap.lo ./abf/axon2/abf2headr.cpp: In function 'void ABF2H_Initialize(ABF2FileHeader*)': ./abf/axon2/abf2headr.cpp:29:34: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ABF2FileHeader'; use assignment or value-initialization instead [-Wclass-memaccess] memset(pFH, '\0', sizeof(*pFH)); @@ -3385,6 +3416,9 @@ ./abf/axon2/abf2headr.h:612:8: note: 'struct ABF2FileHeader' declared here struct ABF2FileHeader ^~~~~~~~~~~~~~ + CXX fileUtils.lo + CXX stringUtils.lo + CXX byteswap.lo CXX hekalib.lo CXX igorlib.lo CC CrossPlatformFileIO.lo @@ -3427,14 +3461,14 @@ Making all in libstfnum make[4]: Entering directory '/build/stimfit-0.15.8/src/libstfnum' CXX fit.lo - CC Axb.lo CC lm.lo + CC Axb.lo CC misc.lo CC lmlec.lo CC lmbc.lo CXX funclib.lo - CXX measure.lo CXX stfnum.lo + CXX measure.lo CXXLD libstfnum.la ar: `u' modifier ignored since `D' is the default (see `U') make[4]: Leaving directory '/build/stimfit-0.15.8/src/libstfnum' @@ -3456,7 +3490,6 @@ CXX libstimfit_la-cursorsdlg.lo CXX libstimfit_la-eventdlg.lo CXX libstimfit_la-fitseldlg.lo - CXX libstimfit_la-smalldlgs.lo In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -3478,16 +3511,16 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ +./gui/graph.cpp: In member function 'void wxStfGraph::ChangeTrace(int)': +./gui/graph.cpp:2083:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] + if (!sec_attr.eventList.empty() && trace != Doc()->GetCurSecIndex()) { + ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from ./gui/unopt.cpp:45: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: 'int _import_array()' defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ -./gui/graph.cpp: In member function 'void wxStfGraph::ChangeTrace(int)': -./gui/graph.cpp:2083:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] - if (!sec_attr.eventList.empty() && trace != Doc()->GetCurSecIndex()) { - ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./gui/././../../libstfio/stfio.h:66, from ./gui/././../stf.h:77, from ./gui/./app.h:178, @@ -3580,6 +3613,7 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: 'int _import_array()' defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ + CXX libstimfit_la-smalldlgs.lo CXX libstimfit_la-usrdlg.lo CXXLD libstimfit.la ar: `u' modifier ignored since `D' is the default (see `U') @@ -3588,6 +3622,12 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/stimfit/py' /usr/bin/swig -c++ -python -o pystf_wrap.cxx pystf.i CXX libpystf_la-pystf.lo +pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. +cat ./gccwarn ./pystf_wrap.cxx > ./pystf_wrap_tmp.cxx +mv ./pystf_wrap_tmp.cxx ./pystf_wrap.cxx + CXX libpystf_la-pystf_wrap.lo In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -3595,12 +3635,6 @@ /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ -pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. -pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. -pystf.i:74: Warning 490: Fragment 'NumPy_Backward_Compatibility' not found. -cat ./gccwarn ./pystf_wrap.cxx > ./pystf_wrap_tmp.cxx -mv ./pystf_wrap_tmp.cxx ./pystf_wrap.cxx - CXX libpystf_la-pystf_wrap.lo In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, @@ -3659,27 +3693,31 @@ CXX stimfittest-measure.o CXX stimfittest-gtest-all.o CXX stimfittest-gtest_main.o -In file included from ./src/test/channel.cpp:2: +In file included from ./src/test/section.cpp:2: ./src/test/gtest/include/gtest/gtest.h: In instantiation of 'testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = long unsigned int; T2 = int]': ./src/test/gtest/include/gtest/gtest.h:1484:23: required from 'static testing::AssertionResult testing::internal::EqHelper::Compare(const char*, const char*, const T1&, const T2&) [with T1 = long unsigned int; T2 = int; bool lhs_is_null_literal = false]' -./src/test/channel.cpp:7:5: required from here +./src/test/section.cpp:6:5: required from here ./src/test/gtest/include/gtest/gtest.h:1448:16: warning: comparison of integer expressions of different signedness: 'const long unsigned int' and 'const int' [-Wsign-compare] if (expected == actual) { ~~~~~~~~~^~~~~~~~~ -In file included from ./src/test/recording.cpp:2: +In file included from ./src/test/channel.cpp:2: ./src/test/gtest/include/gtest/gtest.h: In instantiation of 'testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = long unsigned int; T2 = int]': ./src/test/gtest/include/gtest/gtest.h:1484:23: required from 'static testing::AssertionResult testing::internal::EqHelper::Compare(const char*, const char*, const T1&, const T2&) [with T1 = long unsigned int; T2 = int; bool lhs_is_null_literal = false]' -./src/test/recording.cpp:7:5: required from here +./src/test/channel.cpp:7:5: required from here ./src/test/gtest/include/gtest/gtest.h:1448:16: warning: comparison of integer expressions of different signedness: 'const long unsigned int' and 'const int' [-Wsign-compare] if (expected == actual) { ~~~~~~~~~^~~~~~~~~ -In file included from ./src/test/section.cpp:2: +In file included from ./src/test/recording.cpp:2: ./src/test/gtest/include/gtest/gtest.h: In instantiation of 'testing::AssertionResult testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const T2&) [with T1 = long unsigned int; T2 = int]': ./src/test/gtest/include/gtest/gtest.h:1484:23: required from 'static testing::AssertionResult testing::internal::EqHelper::Compare(const char*, const char*, const T1&, const T2&) [with T1 = long unsigned int; T2 = int; bool lhs_is_null_literal = false]' -./src/test/section.cpp:6:5: required from here +./src/test/recording.cpp:7:5: required from here ./src/test/gtest/include/gtest/gtest.h:1448:16: warning: comparison of integer expressions of different signedness: 'const long unsigned int' and 'const int' [-Wsign-compare] if (expected == actual) { ~~~~~~~~~^~~~~~~~~ +./src/test/measure.cpp: In function 'std::vector norm(double, double)': +./src/test/measure.cpp:162:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] + for (int i=0; i < myrand.size(); ++i){ + ~~^~~~~~~~~~~~~~~ ./src/test/fit.cpp: In member function 'virtual void fitlib_test_monoexponential_Test::TestBody()': ./src/test/fit.cpp:224:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int n = 0; n < data.size(); ++n) { @@ -3739,10 +3777,6 @@ ./src/test/fit.cpp:910:12: warning: unused variable 'chisqr' [-Wunused-variable] double chisqr = stfnum::lmFit(data, dt, funcLib[12], opts, ^~~~~~ -./src/test/measure.cpp: In function 'std::vector norm(double, double)': -./src/test/measure.cpp:162:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] - for (int i=0; i < myrand.size(); ++i){ - ~~^~~~~~~~~~~~~~~ CXXLD stimfittest make[3]: Leaving directory '/build/stimfit-0.15.8' /usr/bin/make check-TESTS @@ -3773,13 +3807,13 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/libbiosiglite' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libbiosiglite.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libbiosiglite.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: install: /usr/bin/install -c .libs/libbiosiglite.so /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libbiosiglite.so libtool: install: /usr/bin/install -c .libs/libbiosiglite.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libbiosiglite.la libtool: install: /usr/bin/install -c .libs/libbiosiglite.a /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libbiosiglite.a libtool: install: chmod 644 /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libbiosiglite.a libtool: install: ranlib /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libbiosiglite.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit @@ -3805,13 +3839,13 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/libstfio' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfio.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libstfio.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: install: /usr/bin/install -c .libs/libstfio.so /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfio.so libtool: install: /usr/bin/install -c .libs/libstfio.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfio.la libtool: install: /usr/bin/install -c .libs/libstfio.a /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfio.a libtool: install: chmod 644 /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfio.a libtool: install: ranlib /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfio.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit @@ -3837,13 +3871,13 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/libstfnum' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfnum.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libstfnum.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: install: /usr/bin/install -c .libs/libstfnum.so /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfnum.so libtool: install: /usr/bin/install -c .libs/libstfnum.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfnum.la libtool: install: /usr/bin/install -c .libs/libstfnum.a /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfnum.a libtool: install: chmod 644 /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfnum.a libtool: install: ranlib /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstfnum.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit @@ -3869,15 +3903,15 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/stimfit' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libstimfit.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libstimfit.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: warning: relinking 'libstimfit.la' -libtool: install: (cd /build/stimfit-0.15.8/src/stimfit; /bin/bash "/build/stimfit-0.15.8/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.0 -I/usr/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.15.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib -lpython2.7 -Wl,-rpath,/usr/lib/stimfit -avoid-version -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libstimfit.la -rpath /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit libstimfit_la-stf.lo libstimfit_la-app.lo libstimfit_la-unopt.lo libstimfit_la-doc.lo libstimfit_la-copygrid.lo libstimfit_la-graph.lo libstimfit_la-printout.lo libstimfit_la-parentframe.lo libstimfit_la-childframe.lo libstimfit_la-view.lo libstimfit_la-table.lo libstimfit_la-zoom.lo libstimfit_la-convertdlg.lo libstimfit_la-cursorsdlg.lo libstimfit_la-eventdlg.lo libstimfit_la-fitseldlg.lo libstimfit_la-smalldlgs.lo libstimfit_la-usrdlg.lo -L/usr/lib/x86_64-linux-gnu -pthread -lwx_baseu-3.0 -lwx_gtk3u_core-3.0 -lwx_gtk3u_adv-3.0 -lwx_gtk3u_aui-3.0 -lwx_baseu_net-3.0 ../libstfio/libstfio.la ../libstfnum/libstfnum.la ../libbiosiglite/libbiosiglite.la ) +libtool: install: (cd /build/stimfit-0.15.8/src/stimfit; /bin/sh "/build/stimfit-0.15.8/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.0 -I/usr/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.15.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib -lpython2.7 -Wl,-rpath,/usr/lib/stimfit -avoid-version -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libstimfit.la -rpath /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit libstimfit_la-stf.lo libstimfit_la-app.lo libstimfit_la-unopt.lo libstimfit_la-doc.lo libstimfit_la-copygrid.lo libstimfit_la-graph.lo libstimfit_la-printout.lo libstimfit_la-parentframe.lo libstimfit_la-childframe.lo libstimfit_la-view.lo libstimfit_la-table.lo libstimfit_la-zoom.lo libstimfit_la-convertdlg.lo libstimfit_la-cursorsdlg.lo libstimfit_la-eventdlg.lo libstimfit_la-fitseldlg.lo libstimfit_la-smalldlgs.lo libstimfit_la-usrdlg.lo -L/usr/lib/x86_64-linux-gnu -pthread -lwx_baseu-3.0 -lwx_gtk3u_core-3.0 -lwx_gtk3u_adv-3.0 -lwx_gtk3u_aui-3.0 -lwx_baseu_net-3.0 ../libstfio/libstfio.la ../libstfnum/libstfnum.la ../libbiosiglite/libbiosiglite.la ) libtool: install: /usr/bin/install -c .libs/libstimfit.soT /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstimfit.so libtool: install: /usr/bin/install -c .libs/libstimfit.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstimfit.la libtool: install: /usr/bin/install -c .libs/libstimfit.a /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstimfit.a libtool: install: chmod 644 /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstimfit.a libtool: install: ranlib /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libstimfit.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit @@ -3903,15 +3937,15 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/stimfit/py' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' - /bin/bash ../../../libtool --mode=install /usr/bin/install -c libpystf.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' + /bin/sh ../../../libtool --mode=install /usr/bin/install -c libpystf.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: warning: relinking 'libpystf.la' -libtool: install: (cd /build/stimfit-0.15.8/src/stimfit/py; /bin/bash "/build/stimfit-0.15.8/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.0 -I/usr/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.15.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib -lpython2.7 -Wl,-rpath,/usr/lib/stimfit -avoid-version -lcholmod -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libpystf.la -rpath /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit libpystf_la-pystf.lo libpystf_la-pystf_wrap.lo ../libstimfit.la ../../libstfio/libstfio.la -L/usr/lib/x86_64-linux-gnu -pthread -lwx_baseu-3.0 -lwx_gtk3u_core-3.0 -lwx_gtk3u_adv-3.0 -lwx_gtk3u_aui-3.0 -lwx_baseu_net-3.0 ../../libbiosiglite/libbiosiglite.la ) +libtool: install: (cd /build/stimfit-0.15.8/src/stimfit/py; /bin/sh "/build/stimfit-0.15.8/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -I/usr/lib/x86_64-linux-gnu/wx/include/gtk3-unicode-3.0 -I/usr/include/wx-3.0 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -pthread -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.15.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib -lpython2.7 -Wl,-rpath,/usr/lib/stimfit -avoid-version -lcholmod -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libpystf.la -rpath /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit libpystf_la-pystf.lo libpystf_la-pystf_wrap.lo ../libstimfit.la ../../libstfio/libstfio.la -L/usr/lib/x86_64-linux-gnu -pthread -lwx_baseu-3.0 -lwx_gtk3u_core-3.0 -lwx_gtk3u_adv-3.0 -lwx_gtk3u_aui-3.0 -lwx_baseu_net-3.0 ../../libbiosiglite/libbiosiglite.la ) libtool: install: /usr/bin/install -c .libs/libpystf.soT /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libpystf.so libtool: install: /usr/bin/install -c .libs/libpystf.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libpystf.la libtool: install: /usr/bin/install -c .libs/libpystf.a /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libpystf.a libtool: install: chmod 644 /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libpystf.a libtool: install: ranlib /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit/libpystf.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit @@ -3966,7 +4000,7 @@ make[3]: Entering directory '/build/stimfit-0.15.8' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/bin' - /bin/bash ./libtool --mode=install /usr/bin/install -c stimfit '/build/stimfit-0.15.8/debian/tmp/usr/bin' + /bin/sh ./libtool --mode=install /usr/bin/install -c stimfit '/build/stimfit-0.15.8/debian/tmp/usr/bin' libtool: warning: './src/stimfit/libstimfit.la' has not been installed in '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: warning: './src/libstfio/libstfio.la' has not been installed in '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' libtool: warning: './src/libstfnum/libstfnum.la' has not been installed in '/build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit' @@ -3974,8 +4008,8 @@ libtool: install: /usr/bin/install -c .libs/stimfit /build/stimfit-0.15.8/debian/tmp/usr/bin/stimfit /usr/bin/make install-exec-hook make[4]: Entering directory '/build/stimfit-0.15.8' -/bin/bash ./libtool --finish /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +/bin/sh ./libtool --finish /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/stimfit @@ -4199,15 +4233,15 @@ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, - from ../../src/pystfio/pystfio.h:7, - from ../../src/pystfio/pystfio.cxx:44: + from ../../src/pystfio/pystfio_wrap.cxx:3147: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, - from ../../src/pystfio/pystfio_wrap.cxx:3147: + from ../../src/pystfio/pystfio.h:7, + from ../../src/pystfio/pystfio.cxx:44: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ @@ -4235,7 +4269,7 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/libbiosiglite' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libbiosiglite.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libbiosiglite.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' libtool: install: /usr/bin/install -c .libs/libbiosiglite.so /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libbiosiglite.so libtool: install: /usr/bin/install -c .libs/libbiosiglite.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libbiosiglite.la libtool: install: /usr/bin/install -c .libs/libbiosiglite.a /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libbiosiglite.a @@ -4249,7 +4283,7 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/libstfio' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfio.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libstfio.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' libtool: install: /usr/bin/install -c .libs/libstfio.so /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libstfio.so libtool: install: /usr/bin/install -c .libs/libstfio.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libstfio.la libtool: install: /usr/bin/install -c .libs/libstfio.a /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libstfio.a @@ -4263,7 +4297,7 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/libstfnum' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libstfnum.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libstfnum.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' libtool: install: /usr/bin/install -c .libs/libstfnum.so /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libstfnum.so libtool: install: /usr/bin/install -c .libs/libstfnum.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libstfnum.la libtool: install: /usr/bin/install -c .libs/libstfnum.a /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libstfnum.a @@ -4277,15 +4311,15 @@ make[4]: Entering directory '/build/stimfit-0.15.8/src/pystfio' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' - /bin/bash ../../libtool --mode=install /usr/bin/install -c libpystfio.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' + /bin/sh ../../libtool --mode=install /usr/bin/install -c libpystfio.la '/build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio' libtool: warning: relinking 'libpystfio.la' -libtool: install: (cd /build/stimfit-0.15.8/src/pystfio; /bin/bash "/build/stimfit-0.15.8/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.15.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib -lpython2.7 -avoid-version -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libpystfio.la -rpath /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio libpystfio_la-pystfio.lo libpystfio_la-pystfio_wrap.lo ./../libstfio/libstfio.la ./../libstfnum/libstfnum.la ./../libbiosiglite/libbiosiglite.la ) +libtool: install: (cd /build/stimfit-0.15.8/src/pystfio; /bin/sh "/build/stimfit-0.15.8/libtool" --silent --tag CXX --mode=relink g++ -O2 -g -fPIC -g -O2 -ffile-prefix-map=/build/stimfit-0.15.8=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -L/usr/lib -lpython2.7 -avoid-version -Wl,-z,relro -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lhdf5_hl -o libpystfio.la -rpath /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio libpystfio_la-pystfio.lo libpystfio_la-pystfio_wrap.lo ./../libstfio/libstfio.la ./../libstfnum/libstfnum.la ./../libbiosiglite/libbiosiglite.la ) libtool: install: /usr/bin/install -c .libs/libpystfio.soT /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libpystfio.so libtool: install: /usr/bin/install -c .libs/libpystfio.lai /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libpystfio.la libtool: install: /usr/bin/install -c .libs/libpystfio.a /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libpystfio.a libtool: install: chmod 644 /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libpystfio.a libtool: install: ranlib /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio/libpystfio.a -libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio +libtool: finish: PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/sbin" ldconfig -n /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio ---------------------------------------------------------------------- Libraries have been installed in: /build/stimfit-0.15.8/debian/tmp/usr/lib/python2.7/site-packages/stfio @@ -4356,10 +4390,10 @@ dh_installchangelogs -X./ChangeLog install -d debian/python-stfio/usr/share/doc/python-stfio install -p -m0644 debian/changelog debian/python-stfio/usr/share/doc/python-stfio/changelog.Debian - install -d debian/stimfit/usr/share/doc/stimfit - install -p -m0644 debian/changelog debian/stimfit/usr/share/doc/stimfit/changelog.Debian install -d debian/stimfit-dbg/usr/share/doc/stimfit-dbg install -p -m0644 debian/changelog debian/stimfit-dbg/usr/share/doc/stimfit-dbg/changelog.Debian + install -d debian/stimfit/usr/share/doc/stimfit + install -p -m0644 debian/changelog debian/stimfit/usr/share/doc/stimfit/changelog.Debian dh_installdocs install -d debian/.debhelper/generated/stimfit cp --reflink=auto -a ./TODO debian/stimfit/usr/share/doc/stimfit @@ -4410,17 +4444,17 @@ rm -f debian/stimfit/usr/lib/stimfit/_stf.so ln -s libpystf.so debian/stimfit/usr/lib/stimfit/_stf.so dh_compress - cd debian/stimfit cd debian/python-stfio + cd debian/stimfit cd debian/stimfit-dbg chmod a-x usr/share/doc/python-stfio/changelog.Debian chmod a-x usr/share/doc/stimfit-dbg/changelog.Debian - chmod a-x usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 gzip -9nf usr/share/doc/python-stfio/changelog.Debian gzip -9nf usr/share/doc/stimfit-dbg/changelog.Debian - gzip -9nf usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 cd '/build/stimfit-0.15.8' cd '/build/stimfit-0.15.8' + chmod a-x usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 + gzip -9nf usr/share/doc/stimfit/changelog.Debian usr/share/man/man1/stimfit.1 cd '/build/stimfit-0.15.8' dh_strip --dbg-package=stimfit-dbg install -d debian/stimfit-dbg/usr/lib/debug/.build-id/e0 @@ -4480,23 +4514,23 @@ install -d debian/.debhelper/stimfit-dbg dh_fixperms find debian/stimfit -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 - find debian/stimfit-dbg -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-stfio -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 + find debian/stimfit-dbg -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python-stfio ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/stimfit-dbg ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/stimfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-stfio/usr/share/doc -type f -a -true -a ! -regex 'debian/python-stfio/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/stimfit-dbg/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/stimfit/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-stfio/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/stimfit/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/stimfit-dbg/usr/share/doc -type f -a -true -a ! -regex 'debian/stimfit-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/python-stfio -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stimfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/stimfit-dbg/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/python-stfio -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/stimfit-dbg -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stimfit/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/stimfit-dbg/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/stimfit-dbg -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-stfio/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/stimfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/stimfit-dbg/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/stimfit/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/stimfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_icons @@ -4510,7 +4544,7 @@ D: dh_python2 debhelper:153: source=stimfit, binary packages=['stimfit', 'python-stfio'] D: dh_python2 dh_python2:415: processing package stimfit... D: dh_python2 tools:102: fix_shebang (debian/stimfit/usr/bin/stimfit): cannot parse binary file -D: dh_python2 fs:260: package stimfit details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {'/usr/lib/stimfit': {'ext_vers': {Version('2.7')}, 'compile': True, 'ext_no_version': {'debian/stimfit/usr/lib/stimfit/libstfnum.so', 'debian/stimfit/usr/lib/stimfit/libstfio.so', 'debian/stimfit/usr/lib/stimfit/libbiosiglite.so'}}}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} +D: dh_python2 fs:260: package stimfit details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {'/usr/lib/stimfit': {'ext_vers': {Version('2.7')}, 'compile': True, 'ext_no_version': {'debian/stimfit/usr/lib/stimfit/libstfio.so', 'debian/stimfit/usr/lib/stimfit/libbiosiglite.so', 'debian/stimfit/usr/lib/stimfit/libstfnum.so'}}}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package stimfit D: dh_python2 depends:272: D={'python:any'}; R=[]; S=[]; E=[], B=[]; RT=[('/usr/lib/stimfit', '-V 2.7')] D: dh_python2 dh_python2:415: processing package python-stfio... @@ -4520,7 +4554,7 @@ W: dh_python2 dh_python2:67: public extension linked with libpython2.7: _stfio.so D: dh_python2 fs:260: package python-stfio details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('2.7')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('2.7')}, 'ext_no_version': set()} D: dh_python2 depends:114: generating dependencies for package python-stfio -D: dh_python2 depends:272: D={'python (>= 2.7~)', 'python:any (<< 2.8)', 'python:any', 'python:any (>= 2.7~)', 'python2.7', 'python (<< 2.8)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python2 depends:272: D={'python:any (<< 2.8)', 'python:any (>= 2.7~)', 'python (>= 2.7~)', 'python:any', 'python (<< 2.8)', 'python2.7'}; R=[]; S=[]; E=[], B=[]; RT=[] [ -x /usr/bin/dh_numpy ] && dh_numpy || : (grep -a -s -v python:Depends debian/stimfit.substvars; echo "python:Depends=python-numpy (>= 1:1.16.0~rc1), python-numpy-abi9, python2.7, python:any") > debian/stimfit.substvars.new mv debian/stimfit.substvars.new debian/stimfit.substvars @@ -4537,48 +4571,48 @@ dpkg-shlibdeps -Tdebian/python-stfio.substvars debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfnum.so debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfio.so debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libbiosiglite.so debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/_stfio.so install -d debian/stimfit/DEBIAN dpkg-shlibdeps -Tdebian/stimfit.substvars debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit/usr/lib/stimfit/libstfio.so debian/stimfit/usr/lib/stimfit/libstfnum.so debian/stimfit/usr/lib/stimfit/libstimfit.so debian/stimfit/usr/bin/stimfit +dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfio.so contains an unresolvable reference to symbol biosig_channel_get_physdimcode: it's probably a plugin +dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio14vec_scal_minusERKSt6vectorIdSaIdEEd: it's probably a plugin +dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' +dpkg-shlibdeps: warning: debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfio.so contains an unresolvable reference to symbol biosig_get_manufacturer_name: it's probably a plugin +dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/_stfio.so was not linked against libbiosiglite.so (it uses none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libbiosiglite.so debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfio.so were not linked against libcholmod.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libbiosiglite.so was not linked against libz.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' -dpkg-shlibdeps: warning: debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfio.so contains an unresolvable reference to symbol biosig_get_number_of_events: it's probably a plugin -dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio14vec_scal_minusERKSt6vectorIdSaIdEEd: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libstfio.so debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libbiosiglite.so were not linked against libcholmod.so.3 (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/libbiosiglite.so was not linked against libz.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-stfio/usr/lib/python2.7/dist-packages/stfio/_stfio.so was not linked against libbiosiglite.so (it uses none of the library's symbols) +dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' -dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libpystf.so contains an unresolvable reference to symbol _ZN6stfnum5Table11SetColLabelEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin -dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) -dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio14vec_scal_minusERKSt6vectorIdSaIdEEd: it's probably a plugin -dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstimfit.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' -dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfio.so contains an unresolvable reference to symbol PhysDimScale: it's probably a plugin -dpkg-shlibdeps: warning: 50 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libpystf.so contains an unresolvable reference to symbol _ZN6stfnum5lmFitERKSt6vectorIdSaIdEEdRKNS_10storedFuncES4_bRS2_RNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERi: it's probably a plugin +dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) +dpkg-shlibdeps: warning: debian/stimfit/usr/lib/stimfit/libstfnum.so contains an unresolvable reference to symbol _ZN5stfio12vec_scal_divERKSt6vectorIdSaIdEEd: it's probably a plugin +dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfio.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libstfnum.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libbiosiglite.so' +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/lib/stimfit/libstfio.so debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit/usr/bin/stimfit debian/stimfit/usr/lib/stimfit/libpystf.so were not linked against libcholmod.so.3 (they use none of the library's symbols) +dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/bin/stimfit debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit/usr/lib/stimfit/libstimfit.so were not linked against libbiosiglite.so (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/lib/stimfit/libbiosiglite.so was not linked against libz.so.1 (it uses none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit/usr/bin/stimfit debian/stimfit/usr/lib/stimfit/libstimfit.so were not linked against libbiosiglite.so (they use none of the library's symbols) -dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/lib/stimfit/libpystf.so debian/stimfit/usr/lib/stimfit/libbiosiglite.so debian/stimfit/usr/bin/stimfit debian/stimfit/usr/lib/stimfit/libstfio.so were not linked against libcholmod.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stimfit/usr/bin/stimfit was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb printf '#!/bin/sh\nset -e\n' > debian/stimfit/DEBIAN/postinst @@ -4603,26 +4637,26 @@ chmod 0755 -- debian/python-stfio/DEBIAN/prerm chown 0:0 -- debian/python-stfio/DEBIAN/prerm dh_gencontrol - echo misc:Depends= >> debian/stimfit.substvars - echo misc:Pre-Depends= >> debian/stimfit.substvars - dpkg-gencontrol -pstimfit -ldebian/changelog -Tdebian/stimfit.substvars -Pdebian/stimfit -UMulti-Arch echo misc:Depends= >> debian/python-stfio.substvars echo misc:Pre-Depends= >> debian/python-stfio.substvars dpkg-gencontrol -ppython-stfio -ldebian/changelog -Tdebian/python-stfio.substvars -Pdebian/python-stfio -UMulti-Arch + echo misc:Depends= >> debian/stimfit.substvars + echo misc:Pre-Depends= >> debian/stimfit.substvars + dpkg-gencontrol -pstimfit -ldebian/changelog -Tdebian/stimfit.substvars -Pdebian/stimfit -UMulti-Arch echo misc:Depends= >> debian/stimfit-dbg.substvars echo misc:Pre-Depends= >> debian/stimfit-dbg.substvars dpkg-gencontrol -pstimfit-dbg -ldebian/changelog -Tdebian/stimfit-dbg.substvars -Pdebian/stimfit-dbg "-DBuild-Ids=1bd57cb3b5e22aff00645fb414e3f1e9373a6cb7 1c7914039dd944ed66fa95232f88edd67c3bc1a1 32513e132fe381ea8f79228cb7c94e67fec64646 5c90c4111c5872333055c68503a801e853348a76 c9f0b82d3ffb4d0c9f66e2a95bf6a44851efcdd2 e09a8d1af08681bf9894f320ee659718d066f824 ecdce911b2375db6fb81385277b6b610d25f4d66" -UMulti-Arch dpkg-gencontrol: warning: package python-stfio: substitution variable ${python:Versions} unused, but is defined chmod 0644 -- debian/python-stfio/DEBIAN/control chown 0:0 -- debian/python-stfio/DEBIAN/control - chmod 0644 -- debian/stimfit/DEBIAN/control - chown 0:0 -- debian/stimfit/DEBIAN/control dpkg-gencontrol: warning: package stimfit-dbg: substitution variable ${python:Depends} unused, but is defined chmod 0644 -- debian/stimfit-dbg/DEBIAN/control chown 0:0 -- debian/stimfit-dbg/DEBIAN/control + chmod 0644 -- debian/stimfit/DEBIAN/control + chown 0:0 -- debian/stimfit/DEBIAN/control dh_md5sums - cd debian/stimfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-stfio >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/stimfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/stimfit-dbg >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-stfio/DEBIAN/md5sums chown 0:0 -- debian/python-stfio/DEBIAN/md5sums @@ -4631,24 +4665,26 @@ chmod 0644 -- debian/stimfit-dbg/DEBIAN/md5sums chown 0:0 -- debian/stimfit-dbg/DEBIAN/md5sums dh_builddeb - dpkg-deb --build debian/stimfit .. - dpkg-deb --build debian/stimfit-dbg .. dpkg-deb --build debian/python-stfio .. + dpkg-deb --build debian/stimfit-dbg .. + dpkg-deb --build debian/stimfit .. dpkg-deb: building package 'stimfit-dbg' in '../stimfit-dbg_0.15.8-1_amd64.deb'. -dpkg-deb: building package 'stimfit' in '../stimfit_0.15.8-1_amd64.deb'. dpkg-deb: building package 'python-stfio' in '../python-stfio_0.15.8-1_amd64.deb'. +dpkg-deb: building package 'stimfit' in '../stimfit_0.15.8-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../stimfit_0.15.8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/57276/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/57276/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13715 and its subdirectories -I: Current time: Wed Aug 17 12:06:46 -12 2022 -I: pbuilder-time-stamp: 1660781206 +I: removing directory /srv/workspace/pbuilder/57276 and its subdirectories +I: Current time: Fri Jul 16 08:13:11 +14 2021 +I: pbuilder-time-stamp: 1626372791