Diff of the two buildlogs: -- --- b1/build.log 2020-03-27 04:20:27.561221452 +0000 +++ b2/build.log 2020-03-27 04:34:27.300236112 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 28 22:42:31 -12 2021 -I: pbuilder-time-stamp: 1619692951 +I: Current time: Fri Mar 27 18:20:30 +14 2020 +I: pbuilder-time-stamp: 1585282830 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sat Jul 28 15:29:36 2018 -12 +gpgv: Signature made Sun Jul 29 17:29:36 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -30,6 +30,18 @@ dpkg-source: info: applying adapt_doc.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/6671/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6671/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -251,7 +263,7 @@ Get: 180 http://deb.debian.org/debian buster/main i386 wdiff i386 1.2.2-2+b1 [123 kB] Get: 181 http://deb.debian.org/debian buster/main i386 devscripts i386 2.19.5+deb10u1 [1046 kB] Get: 182 http://deb.debian.org/debian buster/main i386 javahelper all 0.72.9 [96.4 kB] -Fetched 386 MB in 7s (56.3 MB/s) +Fetched 386 MB in 2min 16s (2846 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -981,134 +993,134 @@ Setting up libgl1:i386 (1.1.0-1) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory -Adding debian:COMODO_RSA_Certification_Authority.pem -Adding debian:IdenTrust_Commercial_Root_CA_1.pem -Adding debian:Security_Communication_Root_CA.pem -Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem -Adding debian:Entrust_Root_Certification_Authority_-_G2.pem -Adding debian:GlobalSign_Root_CA_-_R2.pem -Adding debian:Actalis_Authentication_Root_CA.pem -Adding debian:TWCA_Global_Root_CA.pem +Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem +Adding debian:Izenpe.com.pem +Adding debian:GeoTrust_Global_CA.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem -Adding debian:Certplus_Class_2_Primary_CA.pem -Adding debian:COMODO_Certification_Authority.pem -Adding debian:ISRG_Root_X1.pem -Adding debian:Sonera_Class_2_Root_CA.pem -Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:GeoTrust_Universal_CA_2.pem +Adding debian:DigiCert_Global_Root_G2.pem +Adding debian:GlobalSign_Root_CA_-_R6.pem +Adding debian:Security_Communication_Root_CA.pem Adding debian:Secure_Global_CA.pem -Adding debian:SwissSign_Gold_CA_-_G2.pem -Adding debian:T-TeleSec_GlobalRoot_Class_2.pem -Adding debian:QuoVadis_Root_CA_2.pem -Adding debian:Amazon_Root_CA_2.pem -Adding debian:Global_Chambersign_Root_-_2008.pem -Adding debian:EC-ACC.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem -Adding debian:T-TeleSec_GlobalRoot_Class_3.pem -Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:QuoVadis_Root_CA_3.pem +Adding debian:DigiCert_Assured_ID_Root_G3.pem +Adding debian:AffirmTrust_Premium.pem +Adding debian:Entrust_Root_Certification_Authority.pem +Adding debian:XRamp_Global_CA_Root.pem +Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem +Adding debian:Hongkong_Post_Root_CA_1.pem +Adding debian:AffirmTrust_Commercial.pem Adding debian:Buypass_Class_3_Root_CA.pem -Adding debian:COMODO_ECC_Certification_Authority.pem -Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Certigna.pem -Adding debian:thawte_Primary_Root_CA.pem -Adding debian:AffirmTrust_Premium.pem -Adding debian:QuoVadis_Root_CA_3.pem -Adding debian:AddTrust_External_Root.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem -Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem -Adding debian:Trustis_FPS_Root_CA.pem -Adding debian:TrustCor_RootCert_CA-1.pem -Adding debian:QuoVadis_Root_CA_2_G3.pem -Adding debian:TrustCor_ECA-1.pem -Adding debian:ePKI_Root_Certification_Authority.pem -Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:ACCVRAIZ1.pem -Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:DigiCert_Global_Root_G3.pem +Adding debian:Trustis_FPS_Root_CA.pem +Adding debian:Sonera_Class_2_Root_CA.pem +Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem +Adding debian:ISRG_Root_X1.pem +Adding debian:CA_Disig_Root_R2.pem +Adding debian:SecureSign_RootCA11.pem +Adding debian:Certplus_Class_2_Primary_CA.pem +Adding debian:GlobalSign_Root_CA_-_R3.pem +Adding debian:VeriSign_Universal_Root_Certification_Authority.pem +Adding debian:GDCA_TrustAUTH_R5_ROOT.pem +Adding debian:COMODO_RSA_Certification_Authority.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem +Adding debian:QuoVadis_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem -Adding debian:DigiCert_Trusted_Root_G4.pem -Adding debian:thawte_Primary_Root_CA_-_G2.pem -Adding debian:SSL.com_Root_Certification_Authority_ECC.pem +Adding debian:Global_Chambersign_Root_-_2008.pem +Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem +Adding debian:TrustCor_RootCert_CA-1.pem +Adding debian:COMODO_ECC_Certification_Authority.pem +Adding debian:Chambers_of_Commerce_Root_-_2008.pem +Adding debian:DigiCert_Assured_ID_Root_G2.pem +Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem -Adding debian:Network_Solutions_Certificate_Authority.pem -Adding debian:TWCA_Root_Certification_Authority.pem -Adding debian:GlobalSign_Root_CA.pem -Adding debian:Security_Communication_RootCA2.pem -Adding debian:AC_RAIZ_FNMT-RCM.pem -Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem -Adding debian:AffirmTrust_Premium_ECC.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem -Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem -Adding debian:Taiwan_GRCA.pem -Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem -Adding debian:Certum_Trusted_Network_CA.pem -Adding debian:SZAFIR_ROOT_CA2.pem -Adding debian:AffirmTrust_Networking.pem -Adding debian:Go_Daddy_Class_2_CA.pem +Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Cybertrust_Global_Root.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem +Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem +Adding debian:TrustCor_ECA-1.pem +Adding debian:Amazon_Root_CA_1.pem +Adding debian:GlobalSign_Root_CA.pem +Adding debian:Entrust_Root_Certification_Authority_-_G2.pem +Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem -Adding debian:GeoTrust_Universal_CA_2.pem -Adding debian:Starfield_Class_2_CA.pem -Adding debian:DigiCert_Assured_ID_Root_G2.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem -Adding debian:SecureTrust_CA.pem -Adding debian:GlobalSign_Root_CA_-_R3.pem -Adding debian:XRamp_Global_CA_Root.pem -Adding debian:GeoTrust_Global_CA.pem -Adding debian:DigiCert_Global_Root_CA.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem -Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem -Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem -Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem -Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem +Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:Certum_Trusted_Network_CA_2.pem -Adding debian:Entrust_Root_Certification_Authority.pem -Adding debian:Izenpe.com.pem -Adding debian:certSIGN_ROOT_CA.pem -Adding debian:Deutsche_Telekom_Root_CA_2.pem -Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:TrustCor_RootCert_CA-2.pem -Adding debian:CFCA_EV_ROOT.pem -Adding debian:Amazon_Root_CA_4.pem -Adding debian:Baltimore_CyberTrust_Root.pem -Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem +Adding debian:DigiCert_Global_Root_CA.pem +Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem -Adding debian:Amazon_Root_CA_1.pem -Adding debian:Atos_TrustedRoot_2011.pem -Adding debian:GDCA_TrustAUTH_R5_ROOT.pem -Adding debian:Hongkong_Post_Root_CA_1.pem -Adding debian:QuoVadis_Root_CA.pem -Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem -Adding debian:AffirmTrust_Commercial.pem -Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem -Adding debian:EE_Certification_Centre_Root_CA.pem +Adding debian:Baltimore_CyberTrust_Root.pem +Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem +Adding debian:Starfield_Class_2_CA.pem +Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:Deutsche_Telekom_Root_CA_2.pem +Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem -Adding debian:CA_Disig_Root_R2.pem -Adding debian:Amazon_Root_CA_3.pem -Adding debian:GeoTrust_Universal_CA.pem -Adding debian:DigiCert_Global_Root_G2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem -Adding debian:QuoVadis_Root_CA_3_G3.pem -Adding debian:LuxTrust_Global_Root_2.pem +Adding debian:certSIGN_ROOT_CA.pem +Adding debian:AffirmTrust_Premium_ECC.pem +Adding debian:TWCA_Root_Certification_Authority.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem +Adding debian:ePKI_Root_Certification_Authority.pem +Adding debian:Security_Communication_RootCA2.pem +Adding debian:Amazon_Root_CA_2.pem +Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem +Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem +Adding debian:Atos_TrustedRoot_2011.pem +Adding debian:Buypass_Class_2_Root_CA.pem +Adding debian:T-TeleSec_GlobalRoot_Class_2.pem +Adding debian:QuoVadis_Root_CA_2.pem +Adding debian:T-TeleSec_GlobalRoot_Class_3.pem +Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:DST_Root_CA_X3.pem +Adding debian:E-Tugra_Certification_Authority.pem +Adding debian:Amazon_Root_CA_4.pem +Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem +Adding debian:Taiwan_GRCA.pem +Adding debian:DigiCert_Trusted_Root_G4.pem +Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Certinomis_-_Root_CA.pem -Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem -Adding debian:Chambers_of_Commerce_Root_-_2008.pem -Adding debian:GeoTrust_Primary_Certification_Authority.pem +Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem +Adding debian:LuxTrust_Global_Root_2.pem +Adding debian:QuoVadis_Root_CA_2_G3.pem +Adding debian:CFCA_EV_ROOT.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem +Adding debian:COMODO_Certification_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem -Adding debian:SecureSign_RootCA11.pem -Adding debian:GlobalSign_Root_CA_-_R6.pem -Adding debian:VeriSign_Universal_Root_Certification_Authority.pem -Adding debian:DigiCert_Global_Root_G3.pem -Adding debian:QuoVadis_Root_CA_1_G3.pem +Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem +Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem +Adding debian:AC_RAIZ_FNMT-RCM.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem +Adding debian:SecureTrust_CA.pem Adding debian:Comodo_AAA_Services_root.pem -Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem -Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem -Adding debian:TeliaSonera_Root_CA_v1.pem +Adding debian:EC-ACC.pem +Adding debian:Certum_Trusted_Network_CA.pem Adding debian:SwissSign_Silver_CA_-_G2.pem -Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem -Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem -Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem -Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem +Adding debian:thawte_Primary_Root_CA_-_G2.pem +Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem +Adding debian:TWCA_Global_Root_CA.pem +Adding debian:AffirmTrust_Networking.pem +Adding debian:SZAFIR_ROOT_CA2.pem +Adding debian:GeoTrust_Universal_CA.pem +Adding debian:thawte_Primary_Root_CA.pem +Adding debian:Amazon_Root_CA_3.pem +Adding debian:SSL.com_Root_Certification_Authority_RSA.pem +Adding debian:GlobalSign_Root_CA_-_R2.pem +Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem +Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem +Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem +Adding debian:QuoVadis_Root_CA_3_G3.pem +Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem +Adding debian:IdenTrust_Commercial_Root_CA_1.pem +Adding debian:AddTrust_External_Root.pem +Adding debian:SSL.com_Root_Certification_Authority_ECC.pem done. Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up default-jre-headless (2:1.11-71) ... @@ -1181,7 +1193,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/artfastqgenerator-0.0.20150519/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/artfastqgenerator-0.0.20150519/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package artfastqgenerator dpkg-buildpackage: info: source version 0.0.20150519-3 dpkg-buildpackage: info: source distribution unstable @@ -1217,66 +1229,66 @@ You should have received a copy of the GNU General Public License along with this program; if not, see . -Apr 28, 2021 10:43:20 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs +Mar 27, 2020 6:34:03 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Found the start sequence ID str >1 in >1 dna:chromosome chromosome:GRCh37:1:1:249250621:1 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs +Mar 27, 2020 6:34:03 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Read generation begun. -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logCoverageStatsHeader +Mar 27, 2020 6:34:03 PM artificialFastqGenerator.CoverageStatisticsCalculator logCoverageStatsHeader INFO: ALL_SO_FAR_NUM,ALL_AV_COV,ALL_MIN_COV,ALL_MAX_COV,ACGT_NUM,ACGT_AV_COV,ACGT_MIN_COV,ACGT_MAX_COV -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 10000,26.0213,1,49,9880,26.254554655870447,2,49 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 20000,29.4459,6,48,10000,29.4459,6,48 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 30000,32.6874,15,56,10000,32.6874,15,56 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 40000,31.6144,16,50,10000,31.6144,16,50 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 50000,30.539,12,48,10000,30.539,12,48 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 60000,29.1966,1,54,10000,29.1966,1,54 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 70000,29.9865,10,48,10000,29.9865,10,48 -Apr 28, 2021 10:43:21 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 80000,30.3781,12,59,10000,30.3781,12,59 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 90000,33.2157,12,53,10000,33.2157,12,53 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs +Mar 27, 2020 6:34:04 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 10000,28.0252,1,48,9880,28.289777327935223,6,48 +Mar 27, 2020 6:34:06 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 20000,29.8607,5,51,10000,29.8607,5,51 +Mar 27, 2020 6:34:06 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 30000,33.7376,15,58,10000,33.7376,15,58 +Mar 27, 2020 6:34:09 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 40000,30.2139,10,55,10000,30.2139,10,55 +Mar 27, 2020 6:34:09 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 50000,31.2955,11,53,10000,31.2955,11,53 +Mar 27, 2020 6:34:09 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 60000,28.5894,3,53,10000,28.5894,3,53 +Mar 27, 2020 6:34:10 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 70000,31.5927,13,52,10000,31.5927,13,52 +Mar 27, 2020 6:34:11 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 80000,29.2504,14,48,10000,29.2504,14,48 +Mar 27, 2020 6:34:11 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 90000,32.5018,15,57,10000,32.5018,15,57 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Found the end sequence identifier > in >2 dna:chromosome chromosome:GRCh37:2:1:243199373:1 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.ArtificialFastqGenerator generateArtificialFastqs INFO: Further reads generated only for nucleobases already in memory. -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 100000,32.0184,7,46,9960,32.11325301204819,7,46 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats -INFO: 100080,2.6875,0,6,0,0.0,0,0 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 100000,32.4581,3,55,9960,32.57078313253012,3,55 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logRegionStats +INFO: 100080,2.0375,0,5,0,0.0,0,0 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: OVERALL STATISTICS: -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: # nucleobases processed=100080 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats -INFO: Average coverage=30.488089528377298 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +INFO: Average coverage=30.729576338928858 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: Minimum coverage=0 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats -INFO: Maximum coverage=59 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +INFO: Maximum coverage=58 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats INFO: # ACGTs processed=99840 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats -INFO: ACGT average coverage=30.54766626602564 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats -INFO: ACGT minimum coverage=1 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats -INFO: ACGT maximum coverage=59 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats -INFO: # reads=40148 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats -INFO: # nucleobase calls=3051248 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats -INFO: # ACGT nucleobase calls=3049879 -Apr 28, 2021 10:43:22 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats -INFO: # ACGT call errors=175669 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +INFO: ACGT average coverage=30.792548076923076 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +INFO: ACGT minimum coverage=3 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.CoverageStatisticsCalculator logOverallStats +INFO: ACGT maximum coverage=58 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats +INFO: # reads=40466 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats +INFO: # nucleobase calls=3075416 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats +INFO: # ACGT nucleobase calls=3074328 +Mar 27, 2020 6:34:12 PM artificialFastqGenerator.NucleobaseAndReadFactory logOverallErrorStats +INFO: # ACGT call errors=177709 rm C1.1.fastq C1.2.fastq make[1]: Leaving directory '/build/artfastqgenerator-0.0.20150519' create-stamp debian/debhelper-build-stamp @@ -1304,21 +1316,23 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'artfastqgenerator' in '../artfastqgenerator_0.0.20150519-3_all.deb'. dpkg-deb: building package 'artfastqgenerator-doc' in '../artfastqgenerator-doc_0.0.20150519-3_all.deb'. dpkg-deb: building package 'artfastqgenerator-examples' in '../artfastqgenerator-examples_0.0.20150519-3_all.deb'. +dpkg-deb: building package 'artfastqgenerator' in '../artfastqgenerator_0.0.20150519-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../artfastqgenerator_0.0.20150519-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/6671/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6671/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/59784 and its subdirectories -I: Current time: Wed Apr 28 22:43:26 -12 2021 -I: pbuilder-time-stamp: 1619693006 +I: removing directory /srv/workspace/pbuilder/6671 and its subdirectories +I: Current time: Fri Mar 27 18:34:26 +14 2020 +I: pbuilder-time-stamp: 1585283666