Diff of the two buildlogs: -- --- b1/build.log 2020-05-10 08:46:37.630383541 +0000 +++ b2/build.log 2020-05-10 08:47:21.997500547 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 9 20:41:25 -12 2020 -I: pbuilder-time-stamp: 1589100086 +I: Current time: Sun Jun 13 05:09:38 +14 2021 +I: pbuilder-time-stamp: 1623510578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sun Sep 23 03:15:49 2018 -12 +gpgv: Signature made Mon Sep 24 05:15:49 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,6 +32,18 @@ dpkg-source: info: applying reproducible_build.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/20751/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20751/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +151,7 @@ Get: 58 http://deb.debian.org/debian buster/main i386 libgtextutils-dev i386 0.7-6 [24.5 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libperlio-gzip-perl i386 0.19-1+b5 [17.8 kB] Get: 60 http://deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB] -Fetched 24.8 MB in 4s (6184 kB/s) +Fetched 24.8 MB in 0s (75.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -403,7 +415,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/fastx-toolkit-0.0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/fastx-toolkit-0.0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package fastx-toolkit dpkg-buildpackage: info: source version 0.0.14-6 dpkg-buildpackage: info: source distribution unstable @@ -597,7 +609,7 @@ configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_auto_build - make -j10 + make -j18 make[1]: Entering directory '/build/fastx-toolkit-0.0.14' make all-recursive make[2]: Entering directory '/build/fastx-toolkit-0.0.14' @@ -621,97 +633,97 @@ Making all in fastx_clipper make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' Making all in fastx_trimmer make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_trimmer.o fastx_trimmer.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' Making all in fastx_quality_stats make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_quality_stats.o fastx_quality_stats.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' Making all in fastq_quality_converter make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_converter.o fastq_quality_converter.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' Making all in fastq_to_fasta make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_to_fasta.o fastq_to_fasta.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' Making all in fastq_quality_filter make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_filter.o fastq_quality_filter.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' Making all in fastq_quality_trimmer make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' Making all in fastx_artifacts_filter make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' Making all in fastx_reverse_complement make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_reverse_complement.o fastx_reverse_complement.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' Making all in fastx_collapser make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' Making all in fastx_uncollapser make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' Making all in seqalign_test make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o seqalign_test seqalign_test.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o seqalign_test seqalign_test.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o seqalign_test seqalign_test.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/seqalign_test' Making all in fasta_formatter make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp -/bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' Making all in fasta_nucleotide_changer make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' Making all in fastx_renamer make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_renamer.o fastx_renamer.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' Making all in fastq_masker make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_masker.o fastq_masker.c -/bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a +/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z,relro -Wl,-z,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -ffile-prefix-map=/build/fastx-toolkit-0.0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastq_masker fastq_masker.o ../libfastx/libfastx.a make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src' @@ -769,7 +781,7 @@ make[2]: Leaving directory '/build/fastx-toolkit-0.0.14' make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_auto_test - make -j10 check VERBOSE=1 + make -j18 check VERBOSE=1 make[1]: Entering directory '/build/fastx-toolkit-0.0.14' Making check in m4 make[2]: Entering directory '/build/fastx-toolkit-0.0.14/m4' @@ -930,7 +942,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_clipper /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_clipper make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_clipper' @@ -939,7 +951,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_trimmer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_trimmer' @@ -948,7 +960,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_quality_stats /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_quality_stats make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_quality_stats' @@ -957,7 +969,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_converter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_converter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_converter' @@ -966,7 +978,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_to_fasta /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_to_fasta make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_to_fasta' @@ -975,7 +987,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_filter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_filter' @@ -984,7 +996,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_trimmer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_quality_trimmer' @@ -993,7 +1005,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_artifacts_filter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_artifacts_filter' @@ -1002,7 +1014,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_reverse_complement /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_reverse_complement make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_reverse_complement' @@ -1011,7 +1023,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_collapser /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_collapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_collapser' @@ -1020,7 +1032,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_uncollapser /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_uncollapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_uncollapser' @@ -1036,7 +1048,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_formatter /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_formatter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_formatter' @@ -1045,7 +1057,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_nucleotide_changer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fasta_nucleotide_changer' @@ -1054,7 +1066,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_renamer /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_renamer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastx_renamer' @@ -1063,7 +1075,7 @@ make[3]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' make[4]: Entering directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' /bin/mkdir -p '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' - /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' + /bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_masker '/build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_masker /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_masker make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/fastx-toolkit-0.0.14/src/fastq_masker' @@ -1213,24 +1225,24 @@ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 dh_installman debian/fastq_quality_trimmer.1 install -p -m0644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 + man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new + man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new - man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1.dh-new - man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1.dh-new - man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 > debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new - mv debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 - chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 - mv debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 - chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 - mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 - chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 + man -l --recode UTF-8 ./debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 > debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 + mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 + chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 + mv debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 + chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 mv debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 + mv debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1.dh-new debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 + chmod 0644 -- debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convert FASTQ files to FASTA files' \ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1 @@ -1281,7 +1293,7 @@ /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 for man in `find /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done find: '*.1': No such file or directory -/bin/sh: 1: cannot create /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1: Is a directory +/bin/sh: /build/fastx-toolkit-0.0.14/debian/fastx-toolkit/usr/share/man/man1: Is a directory make[1]: Leaving directory '/build/fastx-toolkit-0.0.14' dh_lintian install -d debian/fastx-toolkit/usr/share/lintian/overrides @@ -1310,36 +1322,36 @@ find debian/fastx-toolkit/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96 - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug debian/fastx-toolkit/usr/bin/fastq_quality_converter + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45 + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug debian/fastx-toolkit/usr/bin/fastq_quality_filter + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07 + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug debian/fastx-toolkit/usr/bin/fastx_uncollapser + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5 + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_clipper debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug debian/fastx-toolkit/usr/bin/fastx_clipper install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/41/0c9f8c947111fafd71134268615b98bcf0a55d.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/41/0c9f8c947111fafd71134268615b98bcf0a55d.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/41/0c9f8c947111fafd71134268615b98bcf0a55d.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/41/0c9f8c947111fafd71134268615b98bcf0a55d.debug debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0 - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug debian/fastx-toolkit/usr/bin/fastx_quality_stats - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5 - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug debian/fastx-toolkit/usr/bin/fastq_quality_trimmer - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_collapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug debian/fastx-toolkit/usr/bin/fastx_collapser + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1 + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug debian/fastx-toolkit/usr/bin/fastx_artifacts_filter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_renamer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/01/1d5801d9eb8b2fbfa841f2bdbc38276a615c2e.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/01/1d5801d9eb8b2fbfa841f2bdbc38276a615c2e.debug @@ -1352,41 +1364,41 @@ chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/05/96af67a0766ec7e86ee32a4f8e6febd08f961f.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/05/96af67a0766ec7e86ee32a4f8e6febd08f961f.debug debian/fastx-toolkit/usr/bin/fastx_trimmer - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug debian/fastx-toolkit/usr/bin/fastq_to_fasta - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07 - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/07/183c59ced5441915fcee58ca5800739cae86a4.debug debian/fastx-toolkit/usr/bin/fastx_uncollapser - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1 - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/f1/1b8746c1c15e96db17c554db96f2e923ec8e16.debug debian/fastx-toolkit/usr/bin/fastx_artifacts_filter - install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45 - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/45/981da3b789eb58a5539e3900f6fea794ac6951.debug debian/fastx-toolkit/usr/bin/fastq_quality_filter + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_collapser debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/7b/fd3f16ed69ad74db0ebe83c3feba9c3dda6706.debug debian/fastx-toolkit/usr/bin/fastx_collapser + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96 + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/96/bd2a9ad8704d1387aadcc1b9d9b946fbd4e86c.debug debian/fastx-toolkit/usr/bin/fastq_quality_converter install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/2d objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fasta_formatter debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/2d/3b752a99984e3f4c91ef4c73da6033aea2f55b.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/2d/3b752a99984e3f4c91ef4c73da6033aea2f55b.debug chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/2d/3b752a99984e3f4c91ef4c73da6033aea2f55b.debug strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/2d/3b752a99984e3f4c91ef4c73da6033aea2f55b.debug debian/fastx-toolkit/usr/bin/fasta_formatter - objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_clipper debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug - chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug - chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug - strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper - objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/ea388453242c912b0478927397ae3c1556a758.debug debian/fastx-toolkit/usr/bin/fastx_clipper + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/0a/d95e165565607f8528a48b27c8e0259e6d1229.debug debian/fastx-toolkit/usr/bin/fastq_to_fasta + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/c5/11fd52fe21a24fe6ea6f18780042d0f5b66b20.debug debian/fastx-toolkit/usr/bin/fastq_quality_trimmer + install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0 + objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug + chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug + chown 0:0 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug + strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats + objcopy --add-gnu-debuglink debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/d0/9f2c9162d30bce4bb0d972974de3222cf3a674.debug debian/fastx-toolkit/usr/bin/fastx_quality_stats install -d debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/73 objcopy --only-keep-debug --compress-debug-sections debian/fastx-toolkit/usr/bin/fastq_masker debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/73/7362b6fa487732629dd13155e13cf5f192f735.debug chmod 0644 -- debian/.debhelper/fastx-toolkit/dbgsym-root/usr/lib/debug/.build-id/73/7362b6fa487732629dd13155e13cf5f192f735.debug @@ -1405,7 +1417,7 @@ rm -f debian/fastx-toolkit/DEBIAN/shlibs dh_shlibdeps install -d debian/fastx-toolkit/DEBIAN - dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_reverse_complement + dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastx_clipper debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_reverse_complement dh_installdeb dh_gencontrol echo misc:Depends= >> debian/fastx-toolkit.substvars @@ -1429,20 +1441,22 @@ dh_builddeb dpkg-deb --build debian/fastx-toolkit .. dpkg-deb --build debian/.debhelper/fastx-toolkit/dbgsym-root .. -dpkg-deb: building package 'fastx-toolkit-dbgsym' in '../fastx-toolkit-dbgsym_0.0.14-6_i386.deb'. dpkg-deb: building package 'fastx-toolkit' in '../fastx-toolkit_0.0.14-6_i386.deb'. +dpkg-deb: building package 'fastx-toolkit-dbgsym' in '../fastx-toolkit-dbgsym_0.0.14-6_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fastx-toolkit_0.0.14-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/20751/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20751/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/15026 and its subdirectories -I: Current time: Sat May 9 20:46:37 -12 2020 -I: pbuilder-time-stamp: 1589100397 +I: removing directory /srv/workspace/pbuilder/20751 and its subdirectories +I: Current time: Sun Jun 13 05:10:21 +14 2021 +I: pbuilder-time-stamp: 1623510621