Diff of the two buildlogs: -- --- b1/build.log 2020-03-20 13:10:11.801953654 +0000 +++ b2/build.log 2020-03-20 13:16:57.533814965 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 22 07:31:23 -12 2021 -I: pbuilder-time-stamp: 1619119883 +I: Current time: Sat Mar 21 03:10:14 +14 2020 +I: pbuilder-time-stamp: 1584709814 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Mon Nov 26 08:37:02 2018 -12 +gpgv: Signature made Tue Nov 27 10:37:02 2018 +14 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kmc_2.3+dfsg-7.dsc @@ -35,6 +35,18 @@ dpkg-source: info: applying newish_gcc_build_fix.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/9641/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/9641/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +152,7 @@ Get: 56 http://deb.debian.org/debian buster/main i386 help2man i386 1.47.8 [177 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libbz2-dev i386 1.0.6-9.2~deb10u1 [31.2 kB] Get: 58 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] -Fetched 27.1 MB in 0s (69.2 MB/s) +Fetched 27.1 MB in 5s (5622 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -402,7 +414,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/kmc-2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/kmc-2.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 2.3+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -416,7 +428,7 @@ rm -rf /build/kmc-2.3+dfsg/debian/man_src/*.html /build/kmc-2.3+dfsg/debian/man_src/*.? rm -rf /build/kmc-2.3+dfsg/debian/man dh_auto_clean -- - make -j18 clean + make -j10 clean make[2]: Entering directory '/build/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule rm kmer_counter/*.o @@ -454,7 +466,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j18 "INSTALL=install --strip-program=true" + make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/kmc-2.3+dfsg' makefile:56: target 'kmc_api/mmer.o' given more than once in the same rule g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmer_counter/kmer_counter.cpp -o kmer_counter/kmer_counter.o @@ -475,19 +487,17 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o kmc_api/kmc_file.cpp: In member function 'bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)': kmc_api/kmc_file.cpp:1360:18: warning: comparison of integer expressions of different signedness: 'int64' {aka 'long long int'} and 'uint64' {aka 'long long unsigned int'} [-Wsign-compare] if (index_start >= total_kmers) ~~~~~~~~~~~~^~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o +kmer_counter/kmer_counter.cpp: In function 'int main(int, char**)': +kmer_counter/kmer_counter.cpp:473:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] + else + ^~~~ +kmer_counter/kmer_counter.cpp:475:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' + cout << " Total no. of super-k-mers : " << setw(12) << n_total_super_kmers << "\n"; + ^~~~ kmc_api/kmc_file.cpp: In member function 'void CKMCFile::Reload_sufix_file_buf()': kmc_api/kmc_file.cpp:607:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (sufix_file_buf, 1, (size_t) part_size, file_suf); @@ -496,17 +506,19 @@ kmc_api/kmc_file.cpp:653:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (sufix_file_buf, 1, (size_t) part_size, file_suf); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_header.cpp -o kmc_tools/kmc_header.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DDISABLE_ASMLIB -g -O2 -ffile-prefix-map=/build/kmc-2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -fopenmp -std=c++11 -Wall -O3 -fopenmp -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o -kmer_counter/kmer_counter.cpp: In function 'int main(int, char**)': -kmer_counter/kmer_counter.cpp:473:1: warning: this 'else' clause does not guard... [-Wmisleading-indentation] - else - ^~~~ -kmer_counter/kmer_counter.cpp:475:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' - cout << " Total no. of super-k-mers : " << setw(12) << n_total_super_kmers << "\n"; - ^~~~ mkdir -p bin -ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_api/mmer.o kmc_dump/kmc_dump.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread +ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -o bin/kmc_tools kmc_tools/kmc_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -lz -lbz2 -fopenmp -lpthread @@ -569,45 +581,39 @@ install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 > debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-dump.1 > debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools.1 > debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc.1 > debian/kmc/usr/share/man/man1/kmc.1.dh-new + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-complex.1 > debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 > debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-union.1 > debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_dump.1 > debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-dump.1 > debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 > debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-complex.1 > debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-compact.1 > debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-sort.1 > debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-filter.1 > debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new - man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new - mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 - mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_dump.1 > debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new + mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-filter.1 > debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new + mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-sort.1 > debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc.1 > debian/kmc/usr/share/man/man1/kmc.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_dump.1 + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-compact.1 > debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new + mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 + man -l --recode UTF-8 ./debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 > debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc.1 make[1]: Leaving directory '/build/kmc-2.3+dfsg' dh_perl dh_link @@ -617,40 +623,40 @@ cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian - cd '/build/kmc-2.3+dfsg' chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 + cd '/build/kmc-2.3+dfsg' gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/kmc-2.3+dfsg' dh_fixperms find debian/kmc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libkmc-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 - find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_strip strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libkmc-dev/usr/lib/i386-linux-gnu/libkmc.a - install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79 - objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug - chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug - chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug - strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc - objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug debian/kmc/usr/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ef/cbc5da1e8c325f8d347d6f6fb2f908fa708844.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ef/cbc5da1e8c325f8d347d6f6fb2f908fa708844.debug chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ef/cbc5da1e8c325f8d347d6f6fb2f908fa708844.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ef/cbc5da1e8c325f8d347d6f6fb2f908fa708844.debug debian/kmc/usr/bin/kmc_dump + install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79 + objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug + chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug + chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug + strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc + objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/79/f32969005e2d99e2723e7c175b2ef889342e41.debug debian/kmc/usr/bin/kmc install -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/75/84dc9a3167e75d5e80064a197c925ceead9974.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/75/84dc9a3167e75d5e80064a197c925ceead9974.debug @@ -664,7 +670,7 @@ rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps install -d debian/kmc/DEBIAN - dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools + dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_tools dh_installdeb install -d debian/libkmc-dev/DEBIAN dh_gencontrol @@ -684,8 +690,8 @@ chmod 0644 -- debian/kmc/DEBIAN/control chown 0:0 -- debian/kmc/DEBIAN/control dh_md5sums - cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chown 0:0 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums @@ -695,23 +701,25 @@ chown 0:0 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/kmc .. - dpkg-deb --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --build debian/libkmc-dev .. + dpkg-deb --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb: building package 'kmc' in '../kmc_2.3+dfsg-7_i386.deb'. -dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_2.3+dfsg-7_i386.deb'. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_2.3+dfsg-7_i386.deb'. +dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_2.3+dfsg-7_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kmc_2.3+dfsg-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/9641/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/9641/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7179 and its subdirectories -I: Current time: Thu Apr 22 07:33:11 -12 2021 -I: pbuilder-time-stamp: 1619119991 +I: removing directory /srv/workspace/pbuilder/9641 and its subdirectories +I: Current time: Sat Mar 21 03:16:57 +14 2020 +I: pbuilder-time-stamp: 1584710217