Diff of the two buildlogs: -- --- b1/build.log 2019-06-12 17:53:41.480120825 +0000 +++ b2/build.log 2019-06-12 17:56:41.811825109 +0000 @@ -1,6 +1,7 @@ +W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 12 05:25:38 -12 2019 -I: pbuilder-time-stamp: 1560360338 +I: Current time: Wed Jul 15 14:16:42 +14 2020 +I: pbuilder-time-stamp: 1594772202 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +19,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sat Jun 8 00:53:28 2019 -12 +gpgv: Signature made Sun Jun 9 02:53:28 2019 +14 gpgv: using RSA key 8451F9178172E7E2DC73F79551F84A8FECCA7E09 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./lambda-align2_2.0.0-6.dsc @@ -32,6 +33,18 @@ dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/33202/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/33202/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +152,7 @@ Get: 60 http://cdn-fastly.deb.debian.org/debian buster/main i386 libseqan2-dev all 2.4.0+dfsg-11 [1220 kB] Get: 61 http://cdn-fastly.deb.debian.org/debian buster/main i386 openssl i386 1.1.1b-2 [849 kB] Get: 62 http://cdn-fastly.deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] -Fetched 31.5 MB in 41s (776 kB/s) +Fetched 31.5 MB in 9s (3485 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -409,9 +422,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (81.7 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25037 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/lambda-align2-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/lambda-align2-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package lambda-align2 dpkg-buildpackage: info: source version 2.0.0-6 dpkg-buildpackage: info: source distribution unstable @@ -452,9 +497,9 @@ -DLAMBDA_MMAPPED_DB=OFF \ -DCMAKE_BUILD_TYPE=Release \ "-DLAMBDA_MULTIOPT_BUILD=0" \ - -DLAMBDA_COMPILE_THREADS=10 + -DLAMBDA_COMPILE_THREADS=18 install -d build - cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=0 -DLAMBDA_COMPILE_THREADS=10 .. + cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release -DLAMBDA_MULTIOPT_BUILD=0 -DLAMBDA_COMPILE_THREADS=18 .. Compiler Detection -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ @@ -497,7 +542,7 @@ -- Build files have been written to: /build/lambda-align2-2.0.0/build make[1]: Leaving directory '/build/lambda-align2-2.0.0' dh_auto_build -O--builddirectory=build - cd build && make -j10 "INSTALL=install --strip-program=true" + cd build && make -j18 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align2-2.0.0/build' /usr/bin/cmake -S/build/lambda-align2-2.0.0 -B/build/lambda-align2-2.0.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align2-2.0.0/build/CMakeFiles /build/lambda-align2-2.0.0/build/CMakeFiles/progress.marks @@ -511,7 +556,7 @@ make -f src/CMakeFiles/lambda2.dir/build.make src/CMakeFiles/lambda2.dir/build make[3]: Entering directory '/build/lambda-align2-2.0.0/build' [ 14%] Building CXX object src/CMakeFiles/lambda2.dir/lambda.cpp.o -cd /build/lambda-align2-2.0.0/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=10 -s -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/lambda-align2-2.0.0/src/lambda.cpp +cd /build/lambda-align2-2.0.0/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DSEQAN_APP_VERSION=\"2.0.0\" -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=18 -s -o CMakeFiles/lambda2.dir/lambda.cpp.o -c /build/lambda-align2-2.0.0/src/lambda.cpp In file included from /build/lambda-align2-2.0.0/src/search.hpp:32, from /build/lambda-align2-2.0.0/src/lambda.cpp:22: /build/lambda-align2-2.0.0/src/shared_options.hpp:219:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -525,7 +570,7 @@ ~~~~~~^~~~~~~~~~~ [ 28%] Linking CXX executable ../bin/lambda2 cd /build/lambda-align2-2.0.0/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=10 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/lambda-align2-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -Wextra -Wall -pedantic -O3 -DNDEBUG -flto=18 -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda2.dir/lambda.cpp.o -o ../bin/lambda2 -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' [ 28%] Built target lambda2 make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/depend @@ -535,15 +580,15 @@ make[3]: Leaving directory '/build/lambda-align2-2.0.0/build' make -f src/CMakeFiles/manual.dir/build.make src/CMakeFiles/manual.dir/build make[3]: Entering directory '/build/lambda-align2-2.0.0/build' -[ 42%] Generating lambda2-mkindexn.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 -[ 71%] Generating lambda2.1 +[ 42%] Generating lambda2.1 +[ 57%] Generating lambda2-searchn.1 [ 71%] Generating lambda2-searchp.1 -[ 85%] Generating lambda2-searchn.1 -[100%] Generating lambda2-mkindexp.1 -cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 --export-help=man > lambda2.1 +[ 85%] Generating lambda2-mkindexn.1 cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchn --export-help=man > lambda2-searchn.1 +[100%] Generating lambda2-mkindexp.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 searchp --export-help=man > lambda2-searchp.1 +cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexn --export-help=man > lambda2-mkindexn.1 cd /build/lambda-align2-2.0.0/build/src && ../bin/lambda2 mkindexp --export-help=man > lambda2-mkindexp.1 mkdir: cannot create directory '/nonexistent': Permission denied mkdir: cannot create directory '/nonexistent': Permission denied @@ -560,7 +605,7 @@ make[1]: Entering directory '/build/lambda-align2-2.0.0' #for md5 in debian/*.md5sums; do gzip --keep ${md5}; done #cp --backup debian/*md5sums.gz tests/ -#cd build/tests && ctest . -j10 -I 1,10 +#cd build/tests && ctest . -j18 -I 1,10 make[1]: Leaving directory '/build/lambda-align2-2.0.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -571,7 +616,7 @@ rm -fr -- debian/.debhelper/generated/lambda-align2/ debian/lambda-align2/ debian/tmp/ dh_auto_install -O--builddirectory=build install -d /build/lambda-align2-2.0.0/debian/lambda-align2 - cd build && make -j10 install DESTDIR=/build/lambda-align2-2.0.0/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j18 install DESTDIR=/build/lambda-align2-2.0.0/debian/lambda-align2 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/lambda-align2-2.0.0/build' /usr/bin/cmake -S/build/lambda-align2-2.0.0 -B/build/lambda-align2-2.0.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/lambda-align2-2.0.0/build/CMakeFiles /build/lambda-align2-2.0.0/build/CMakeFiles/progress.marks @@ -639,21 +684,21 @@ sed -i 's/LAMBDA2 SEARCHP/LAMBDA2_SEARCHP/' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 sed -i 's/^lambda2 searchp /lambda2_searchp /' ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 dh_installman - man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2.1 > debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 > debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 > debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 > debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new + man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2.1 > debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new man -l --recode UTF-8 ./debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 > debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new - mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexp.1 - mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 - chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchp.1 mv debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-searchn.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2-mkindexn.1 + mv debian/lambda-align2/usr/share/man/man1/lambda2.1.dh-new debian/lambda-align2/usr/share/man/man1/lambda2.1 + chmod 0644 -- debian/lambda-align2/usr/share/man/man1/lambda2.1 make[1]: Leaving directory '/build/lambda-align2-2.0.0' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build @@ -704,12 +749,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/33202/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/33202/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/29742 and its subdirectories -I: Current time: Wed Jun 12 05:53:41 -12 2019 -I: pbuilder-time-stamp: 1560362021 +I: removing directory /srv/workspace/pbuilder/33202 and its subdirectories +I: Current time: Wed Jul 15 14:19:41 +14 2020 +I: pbuilder-time-stamp: 1594772381