Diff of the two buildlogs: -- --- b1/build.log 2019-06-19 08:06:04.624722415 +0000 +++ b2/build.log 2019-06-19 08:16:40.929099270 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jul 21 02:28:17 -12 2020 -I: pbuilder-time-stamp: 1595341697 +I: Current time: Wed Jun 19 22:06:07 +14 2019 +I: pbuilder-time-stamp: 1560931567 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Thu Oct 25 02:52:04 2018 -12 +gpgv: Signature made Fri Oct 26 04:52:04 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -36,6 +36,18 @@ dpkg-source: info: applying spelling2.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/30793/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30793/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -162,7 +174,7 @@ Get: 75 http://cdn-fastly.deb.debian.org/debian buster/main i386 libxml-writer-perl all 0.625-1 [29.7 kB] Get: 76 http://cdn-fastly.deb.debian.org/debian buster/main i386 rename all 1.10-1 [17.2 kB] Get: 77 http://cdn-fastly.deb.debian.org/debian buster/main i386 xsltproc i386 1.1.32-2 [121 kB] -Fetched 30.0 MB in 2s (18.8 MB/s) +Fetched 30.0 MB in 24s (1265 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -508,9 +520,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 0s (284 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24470 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/libgo-perl-0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-7 dpkg-buildpackage: info: source distribution unstable @@ -532,128 +576,128 @@ Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j18 + make -j10 make[1]: Entering directory '/build/libgo-perl-0.15' -cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm +cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm +cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm +cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm +cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm +cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm +cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm +cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm +cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm +cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm +cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm +cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm +cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm +cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm +cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm +cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm +cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm +cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm +cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm -cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm -cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm -cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm -cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm -cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm -cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm -cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm +cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm +cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm -cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm +cp GO/Basic.pm blib/lib/GO/Basic.pm +cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm -cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm +cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm -cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm -cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm -cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm +cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm +cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm +cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm +cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm +cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm +cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm +cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm -cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm -cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm -cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm -cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm -cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm -cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm -cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm -cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm -cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm -cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm -cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm -cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm -cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm -cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm -cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm -cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm -cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm -cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm -cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm -cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm -cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm +cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm -cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm -cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm -cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm -cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm +cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm -cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm +cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm -cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm -cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm -cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm -cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm +cp GO/Parser.pm blib/lib/GO/Parser.pm +cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm +cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm +cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm +cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm +cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm +cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm +cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm +cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm +cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm +cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm -cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm -cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm -cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm -cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm -cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm +cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm -cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm +cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm +cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm +cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm +cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm +cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm +cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm +cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm -cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm -cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm -cp GO/Parser.pm blib/lib/GO/Parser.pm -cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm -cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm -cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm -cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm -cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm -cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm -cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl -cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm -cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm -cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl -cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm -cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl -cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl -cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl -cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl -cp GO/Utils.pm blib/lib/GO/Utils.pm -cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl -cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm +cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm +cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm +cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm -cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl -cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl -cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl -cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl -cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl -cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl +cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl +cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm +cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl +cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp go-perl.pod blib/lib/go-perl.pod +cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl +cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl +cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl +cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl +cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl +cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm +cp GO/Utils.pm blib/lib/GO/Utils.pm +cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl +cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm +cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl +cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl +cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl +cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm +cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp scripts/go-apply-xslt blib/script/go-apply-xslt -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl cp scripts/go2chadoxml blib/script/go2chadoxml -cp scripts/go2error_report blib/script/go2error_report +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml +cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl @@ -670,8 +714,8 @@ cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf @@ -683,25 +727,25 @@ "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html -cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml +cp scripts/go2xml blib/script/go2xml cp scripts/map2slim blib/script/map2slim +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/build/libgo-perl-0.15' dh_auto_test - make -j18 test TEST_VERBOSE=1 + make -j10 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libgo-perl-0.15' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:39 2020 -# Current time GMT: Tue Jul 21 14:28:39 2020 +# Current time local: Wed Jun 19 22:16:20 2019 +# Current time GMT: Wed Jun 19 08:16:20 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -713,8 +757,8 @@ t/t020paths.t ............ 1..7 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:39 2020 -# Current time GMT: Tue Jul 21 14:28:39 2020 +# Current time local: Wed Jun 19 22:16:21 2019 +# Current time GMT: Wed Jun 19 08:16:21 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -727,8 +771,8 @@ t/t030detecterror.t ...... 1..4 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:39 2020 -# Current time GMT: Tue Jul 21 14:28:39 2020 +# Current time local: Wed Jun 19 22:16:21 2019 +# Current time GMT: Wed Jun 19 08:16:21 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -770,8 +814,8 @@ t/t050oboformat.t ........ 1..6 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:40 2020 -# Current time GMT: Tue Jul 21 14:28:40 2020 +# Current time local: Wed Jun 19 22:16:21 2019 +# Current time GMT: Wed Jun 19 08:16:21 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -780,224 +824,224 @@ ROOT: biological_process ok 3 ok 4 -EDGE|GO:0003716|GO:0003715|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0003683|GO:0003682|is_a -EDGE|GO:0003682|GO:0003677|is_a -EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003907|GO:0003686|is_a +EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0005624|GO:0000267|is_a -EDGE|GO:0003908|GO:0003824|is_a -EDGE|GO:0003908|GO:0008172|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003718|GO:0003715|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0000182|GO:0003677|is_a +EDGE|GO:0003705|GO:0003702|is_a +EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003678|GO:0004386|is_a +EDGE|GO:0008416|GO:0003824|is_a +EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003707|GO:0004879|is_a +EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0003687|GO:0003677|is_a -EDGE|GO:0003904|GO:0003913|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0003832|GO:0003824|is_a +EDGE|GO:0003684|GO:0003677|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0003676|GO:0003674|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0000142|GO:0030480|is_a +EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0003693|GO:0003677|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048149|GO:0045471|is_a +EDGE|GO:0000267|GO:0005623|part_of +EDGE|GO:0005933|GO:0005623|part_of +EDGE|GO:0043025|GO:0005623|part_of +EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0004844|GO:0003686|is_a +EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003686|GO:0003824|is_a -EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0000133|GO:0005934|part_of -EDGE|GO:0005934|GO:0000134|is_a -EDGE|GO:0005934|GO:0005933|part_of -EDGE|GO:0008456|GO:0003824|is_a -EDGE|GO:0004844|GO:0003686|is_a -EDGE|GO:0004844|GO:0008578|is_a -EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0000144|GO:0030481|is_a -EDGE|GO:0000144|GO:0000142|part_of -EDGE|GO:0003683|GO:0003682|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0008534|GO:0008578|is_a -EDGE|GO:0003708|GO:0004879|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003689|GO:0003687|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0003680|GO:0003677|is_a +EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a -EDGE|GO:0003681|GO:0003677|is_a -EDGE|GO:0000299|GO:0005624|is_a -EDGE|GO:0003717|GO:0003715|is_a -EDGE|GO:0003716|GO:0003715|is_a -EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0003715|GO:0003700|is_a -EDGE|GO:0004844|GO:0008578|is_a -EDGE|GO:0008263|GO:0008578|is_a -EDGE|GO:0008534|GO:0008578|is_a -EDGE|GO:0003907|GO:0008578|is_a +EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a -EDGE|GO:0048149|GO:0045471|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0003704|GO:0003702|is_a -EDGE|GO:0008461|GO:0003824|is_a -EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0008416|GO:0003824|is_a -EDGE|GO:0008336|GO:0003824|is_a -EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003825|GO:0003824|is_a +EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0003839|GO:0003824|is_a +EDGE|GO:0003905|GO:0003824|is_a +EDGE|GO:0008464|GO:0003824|is_a +EDGE|GO:0003833|GO:0003824|is_a +EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a -EDGE|GO:0003906|GO:0003824|is_a -EDGE|GO:0008578|GO:0003824|is_a +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a +EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0008336|GO:0003824|is_a +EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0003905|GO:0003824|is_a -EDGE|GO:0003839|GO:0003824|is_a -EDGE|GO:0003904|GO:0003824|is_a -EDGE|GO:0008111|GO:0003824|is_a +EDGE|GO:0003824|GO:0003674|is_a +EDGE|GO:0003721|GO:0003720|is_a +EDGE|GO:0003691|GO:0003720|is_a +EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003840|GO:0003824|is_a -EDGE|GO:0003825|GO:0003824|is_a -EDGE|GO:0003837|GO:0003824|is_a -EDGE|GO:0003686|GO:0003824|is_a +EDGE|GO:0008488|GO:0003824|is_a +EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003833|GO:0003824|is_a -EDGE|GO:0003908|GO:0003824|is_a -EDGE|GO:0003824|GO:0003674|is_a -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0003686|GO:0003685|is_a -EDGE|GO:0003685|GO:0003677|is_a -EDGE|GO:0008263|GO:0008578|is_a -EDGE|GO:0008263|GO:0003686|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -EDGE|GO:0003680|GO:0003677|is_a +EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0008461|GO:0003824|is_a +EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0003694|GO:0003677|is_a -EDGE|GO:0000150|GO:0003690|is_a -EDGE|GO:0008148|GO:0003711|is_a -EDGE|GO:0008159|GO:0003711|is_a -EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0008456|GO:0003824|is_a +EDGE|GO:0003837|GO:0003824|is_a +EDGE|GO:0000217|GO:0003677|is_a +EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0008111|GO:0003824|is_a -EDGE|GO:0003711|GO:0003700|is_a -EDGE|GO:0003701|GO:0003700|is_a -EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0003715|GO:0003700|is_a +EDGE|GO:0003703|GO:0003702|is_a +EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a -EDGE|GO:0003710|GO:0003700|is_a -EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0003825|GO:0003824|is_a -EDGE|GO:0000133|GO:0005935|part_of +EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0000133|GO:0005934|part_of -EDGE|GO:0000133|GO:0005938|part_of -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0003837|GO:0003824|is_a -EDGE|GO:0003721|GO:0003720|is_a +EDGE|GO:0005934|GO:0000134|is_a +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003721|GO:0003964|is_a -EDGE|GO:0003907|GO:0003686|is_a -EDGE|GO:0003907|GO:0008578|is_a -EDGE|GO:0000150|GO:0003690|is_a -EDGE|GO:0003691|GO:0003690|is_a -EDGE|GO:0003690|GO:0003677|is_a +EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0008464|GO:0003824|is_a -EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0003682|GO:0003677|is_a +EDGE|GO:0003839|GO:0003824|is_a +EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0000133|GO:0005935|part_of +EDGE|GO:0005935|GO:0005933|part_of +EDGE|GO:0005935|GO:0000134|is_a +EDGE|GO:0008263|GO:0008578|is_a +EDGE|GO:0008263|GO:0003686|is_a +EDGE|GO:0005623|GO:0005575|is_a +EDGE|GO:0005934|GO:0005933|part_of +EDGE|GO:0005935|GO:0005933|part_of +EDGE|GO:0005933|GO:0005623|part_of +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0000133|GO:0005934|part_of +EDGE|GO:0000133|GO:0005935|part_of +EDGE|GO:0000133|GO:0005938|part_of +EDGE|GO:0003825|GO:0003824|is_a +EDGE|GO:0008263|GO:0008578|is_a +EDGE|GO:0004844|GO:0008578|is_a +EDGE|GO:0003907|GO:0008578|is_a +EDGE|GO:0008534|GO:0008578|is_a +EDGE|GO:0008578|GO:0003824|is_a +EDGE|GO:0000144|GO:0000142|part_of +EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0003718|GO:0003715|is_a -EDGE|GO:0003684|GO:0003677|is_a -EDGE|GO:0003695|GO:0003677|is_a -EDGE|GO:0003906|GO:0003824|is_a -EDGE|GO:0003691|GO:0003720|is_a -EDGE|GO:0003721|GO:0003720|is_a -EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0003832|GO:0003824|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003716|GO:0003715|is_a +EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003715|GO:0003700|is_a +EDGE|GO:0003708|GO:0003706|is_a +EDGE|GO:0003707|GO:0003706|is_a +EDGE|GO:0003706|GO:0003702|is_a +EDGE|GO:0008148|GO:0003711|is_a +EDGE|GO:0003717|GO:0003715|is_a +EDGE|GO:0003908|GO:0003824|is_a +EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0003693|GO:0003677|is_a -EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0003676|GO:0003674|is_a -EDGE|GO:0005626|GO:0000267|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0003710|GO:0003700|is_a +EDGE|GO:0003702|GO:0003700|is_a +EDGE|GO:0003715|GO:0003700|is_a +EDGE|GO:0003701|GO:0003700|is_a +EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a -EDGE|GO:0003691|GO:0003720|is_a -EDGE|GO:0003691|GO:0003690|is_a -EDGE|GO:0000217|GO:0003677|is_a -EDGE|GO:0003690|GO:0003677|is_a -EDGE|GO:0003685|GO:0003677|is_a -EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0003700|GO:0003677|is_a +EDGE|GO:0003708|GO:0004879|is_a +EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a -EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0008301|GO:0003677|is_a +EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a -EDGE|GO:0003694|GO:0003677|is_a -EDGE|GO:0003720|GO:0003677|is_a -EDGE|GO:0003678|GO:0003677|is_a +EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a -EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0003697|GO:0003677|is_a +EDGE|GO:0003695|GO:0003677|is_a +EDGE|GO:0003682|GO:0003677|is_a +EDGE|GO:0003690|GO:0003677|is_a +EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a -EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a -EDGE|GO:0003682|GO:0003677|is_a -EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a -EDGE|GO:0003677|GO:0003676|is_a -EDGE|GO:0003688|GO:0003687|is_a -EDGE|GO:0008488|GO:0003824|is_a -EDGE|GO:0003905|GO:0003824|is_a -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0003696|GO:0003677|is_a -EDGE|GO:0003840|GO:0003824|is_a -EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0003707|GO:0004879|is_a -EDGE|GO:0008301|GO:0003677|is_a -EDGE|GO:0000133|GO:0005935|part_of -EDGE|GO:0000142|GO:0005935|part_of -EDGE|GO:0005935|GO:0005933|part_of -EDGE|GO:0005935|GO:0000134|is_a -EDGE|GO:0008336|GO:0003824|is_a -EDGE|GO:0003826|GO:0003824|is_a +EDGE|GO:0003696|GO:0003677|is_a +EDGE|GO:0003720|GO:0003677|is_a +EDGE|GO:0003694|GO:0003677|is_a +EDGE|GO:0003677|GO:0003676|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0008148|GO:0003711|is_a -EDGE|GO:0000267|GO:0005623|part_of -EDGE|GO:0043025|GO:0005623|part_of -EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0005623|GO:0005575|is_a -EDGE|GO:0003707|GO:0003706|is_a -EDGE|GO:0003708|GO:0003706|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0000144|GO:0000142|part_of -EDGE|GO:0000142|GO:0030480|is_a -EDGE|GO:0000142|GO:0005935|part_of +EDGE|GO:0003711|GO:0003700|is_a +EDGE|GO:0003694|GO:0003677|is_a +EDGE|GO:0003906|GO:0003824|is_a +EDGE|GO:0000299|GO:0005624|is_a +EDGE|GO:0005624|GO:0000267|is_a +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0003704|GO:0003702|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0003709|GO:0003700|is_a +EDGE|GO:0003691|GO:0003690|is_a +EDGE|GO:0000150|GO:0003690|is_a +EDGE|GO:0003690|GO:0003677|is_a +EDGE|GO:0004844|GO:0008578|is_a +EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0005935|GO:0005933|part_of -EDGE|GO:0005934|GO:0005933|part_of -EDGE|GO:0005933|GO:0005623|part_of -EDGE|GO:0003692|GO:0003677|is_a -EDGE|GO:0003839|GO:0003824|is_a -EDGE|GO:0003833|GO:0003824|is_a +EDGE|GO:0043025|GO:0005623|part_of +EDGE|GO:0003904|GO:0003913|is_a +EDGE|GO:0003904|GO:0003824|is_a +EDGE|GO:0003696|GO:0003677|is_a +EDGE|GO:0005626|GO:0000267|is_a +EDGE|GO:0003681|GO:0003677|is_a +EDGE|GO:0003683|GO:0003682|is_a +EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0008159|GO:0003711|is_a -EDGE|GO:0003705|GO:0003702|is_a -EDGE|GO:0003703|GO:0003702|is_a -EDGE|GO:0003704|GO:0003702|is_a -EDGE|GO:0003706|GO:0003702|is_a -EDGE|GO:0003702|GO:0003700|is_a +EDGE|GO:0003689|GO:0003687|is_a +EDGE|GO:0003688|GO:0003687|is_a +EDGE|GO:0003687|GO:0003677|is_a +EDGE|GO:0003686|GO:0003685|is_a +EDGE|GO:0003685|GO:0003677|is_a total parent rels:118 total (both ways):218 ok 5 @@ -1006,118 +1050,118 @@ t/t060oboformat2.t ....... 1..36 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:40 2020 -# Current time GMT: Tue Jul 21 14:28:40 2020 +# Current time local: Wed Jun 19 22:16:21 2019 +# Current time GMT: Wed Jun 19 08:16:21 2019 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 -ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase +ROOT: 1-phosphatidylinositol-4-phosphate kinase TERMS: 29 -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic -EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0001662|GO:0042596|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:curators -EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -SYNS:class I PI3K|FAKE:0001|fake synonym -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:ai +DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a +DEFXREFS:GO:jic +EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0035094|is_a -EDGE|GO:0035095|GO:0030534|is_a +DEFXREFS:GO:ai +EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0007630|GO:0008344|is_a +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008150|root|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a +SYNS:drinking|eating +DEFXREFS:GO:mah EDGE|GO:0042755|GO:0007631|is_a -DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0048265|is_a -EDGE|GO:0048266|GO:0007610|is_a -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a +SYNS:class I PI3K|fake synonym|FAKE:0001 +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1141,112 +1185,112 @@ ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 +ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of ROOT: root -ROOT: 1-phosphatidylinositol-4-phosphate kinase TERMS: 29 -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a -DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0048266|GO:0048265|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a +SYNS:fake synonym|FAKE:0001|class I PI3K +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:curators -EDGE|GO:0007610|GO:0008150|is_a -EDGE|GO:0008150|root|is_a -DEFXREFS:ISBN:01928006X|GO:jl -EDGE|GO:0043050|GO:0042755|is_a -EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +EDGE|GO:0042595|GO:0007631|is_a +DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk +EDGE|GO:0007637|GO:0007635|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0008343|GO:0007631|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:GO:ai +EDGE|GO:0007628|GO:0008344|is_a +EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008150|root|is_a +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0008344|GO:0007626|is_a DEFXREFS:GO:jic -EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0048149|GO:0030534|is_a +SYNS:drinking|eating DEFXREFS:GO:mah +EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0008343|GO:0030534|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a -DEFXREFS:GO:ai -EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a -EDGE|GO:0008344|GO:0007626|is_a -SYNS:FAKE:0001|fake synonym|class I PI3K -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:jic +EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a -SYNS:drinking|eating -DEFXREFS:GO:mah -EDGE|GO:0042755|GO:0007631|is_a -EDGE|GO:0042756|GO:0007631|is_a -EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a -EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:GO:jic -EDGE|GO:0048150|GO:0045472|is_a -EDGE|GO:0048150|GO:0030534|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk -EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0035094|is_a +EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0030534|is_a +EDGE|GO:0048150|GO:0045472|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0048148|GO:0042220|is_a +DEFXREFS:GO:curators +EDGE|GO:0007610|GO:0008150|is_a +EDGE|GO:0008150|root|is_a +DEFXREFS:ISBN:01928006X|GO:jl +EDGE|GO:0043050|GO:0042755|is_a +EDGE|GO:0042755|GO:0007631|is_a +DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0048266|GO:0048265|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007636|GO:0007635|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1270,112 +1314,112 @@ ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 -ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase -ROOT: Part of ROOT: root +ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase +ROOT: Part of TERMS: 29 +DEFXREFS:ISBN:0198506732|FB:bf +EDGE|GO:0035095|GO:0030534|is_a +EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:MGI:dph|MEDLINE:99119440 +EDGE|GO:0001662|GO:0042596|is_a +EDGE|GO:0001662|GO:0007610|is_a +SYNS:pumping behavior +DEFXREFS:PMID:2181052|WB:cab +EDGE|GO:0043051|GO:0043050|part_of +EDGE|GO:0043050|GO:0042755|is_a +DEFXREFS:GO:curators +EDGE|GO:0007637|GO:0007635|is_a +EDGE|GO:0042048|GO:0007635|is_a +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007635|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007629|GO:0008344|is_a +DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl +EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0008150|root|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a -SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase -XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN -COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. -DEFXREFS:MetaCyc:1.1.1.249-RXN -EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a -SYNS:behaviour -DEFXREFS:WB:ems|ISBN:0395448956 -EDGE|GO:0007635|GO:0007610|is_a -EDGE|GO:0030534|GO:0007610|is_a -EDGE|GO:0048266|GO:0007610|is_a -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0042630|GO:0007610|is_a -EDGE|GO:0007631|GO:0007610|is_a -EDGE|GO:0007610|GO:0008150|is_a -DEFXREFS:GO:jic -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007628|GO:0008344|is_a -SYNS:pumping behavior -DEFXREFS:PMID:2181052|WB:cab -EDGE|GO:0043051|GO:0043050|part_of -EDGE|GO:0043050|GO:0042755|is_a -DEFXREFS:GO:mah|ISBN:0877797099 -EDGE|GO:0048148|GO:0030534|is_a -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0048149|GO:0030534|is_a -EDGE|GO:0008344|GO:0030534|is_a +DEFXREFS:GO:jic +EDGE|GO:0007636|GO:0007635|is_a +EDGE|GO:0007636|GO:0007630|is_a +DEFXREFS:GO:jic +EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0030534|GO:0007610|is_a -DEFXREFS:GO:mah -EDGE|GO:0008343|GO:0030534|is_a -EDGE|GO:0008343|GO:0007631|is_a -DEFXREFS:ISBN:0198506732|FB:bf -EDGE|GO:0035095|GO:0030534|is_a -EDGE|GO:0035095|GO:0035094|is_a +DEFXREFS:GO:jic +EDGE|GO:0048148|GO:0042220|is_a +EDGE|GO:0048148|GO:0030534|is_a +DEFXREFS:WB:cab|PMID:2181052 +EDGE|GO:0043051|GO:0043050|part_of +SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase +XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN +COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. +DEFXREFS:MetaCyc:1.1.1.249-RXN +EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007636|GO:0007630|is_a -EDGE|GO:0007630|GO:0008344|is_a -EDGE|GO:0008150|root|is_a DEFXREFS:GO:ai EDGE|GO:0007628|GO:0008344|is_a -EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a -EDGE|GO:0008344|GO:0007626|is_a +EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a -SYNS:class I PI3K|FAKE:0001|fake synonym -EXACT SYNS:fake synonym -COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. -DEFXREFS:GO:curators|EC:2.7.1.68 -DEFXREFS:GO:jic|ISBN:0198606907 -EDGE|GO:0007629|GO:0008344|is_a +EDGE|GO:0008344|GO:0007626|is_a SYNS:drinking|eating DEFXREFS:GO:mah -EDGE|GO:0042756|GO:0007631|is_a +EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a +EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a -EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a -DEFXREFS:MGI:dph|MEDLINE:99119440 -EDGE|GO:0001662|GO:0007610|is_a -EDGE|GO:0001662|GO:0042596|is_a -DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl -EDGE|GO:0042756|GO:0007631|is_a -DEFXREFS:GO:jic +DEFXREFS:GO:mah|ISBN:0877797099 +EDGE|GO:0008344|GO:0030534|is_a +EDGE|GO:0048149|GO:0030534|is_a +EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a -EDGE|GO:0048150|GO:0045472|is_a +EDGE|GO:0048148|GO:0030534|is_a +EDGE|GO:0008343|GO:0030534|is_a +EDGE|GO:0030534|GO:0007610|is_a +SYNS:class I PI3K|FAKE:0001|fake synonym +EXACT SYNS:fake synonym +COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. +DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a -DEFXREFS:GO:jic -EDGE|GO:0048148|GO:0042220|is_a -EDGE|GO:0048148|GO:0030534|is_a +DEFXREFS:GO:curators +EDGE|GO:0042595|GO:0007631|is_a +EDGE|GO:0042595|GO:0042594|is_a +DEFXREFS:GO:mah +EDGE|GO:0008343|GO:0007631|is_a +EDGE|GO:0008343|GO:0030534|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl -EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a -DEFXREFS:WB:cab|PMID:2181052 -EDGE|GO:0043051|GO:0043050|part_of -DEFXREFS:GO:curators -EDGE|GO:0007636|GO:0007635|is_a -EDGE|GO:0042048|GO:0007635|is_a -EDGE|GO:0007637|GO:0007635|is_a -EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007628|GO:0008344|is_a +DEFXREFS:GO:jic|ISBN:0198606907 +EDGE|GO:0007636|GO:0007630|is_a +EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a -DEFXREFS:GO:curators -EDGE|GO:0042595|GO:0042594|is_a -EDGE|GO:0042595|GO:0007631|is_a +SYNS:behaviour +DEFXREFS:WB:ems|ISBN:0395448956 +EDGE|GO:0001662|GO:0007610|is_a +EDGE|GO:0048266|GO:0007610|is_a +EDGE|GO:0042630|GO:0007610|is_a +EDGE|GO:0007631|GO:0007610|is_a +EDGE|GO:0007635|GO:0007610|is_a +EDGE|GO:0030534|GO:0007610|is_a +EDGE|GO:0007610|GO:0008150|is_a total defs:27 total def xrefs:42 total xrefs:2 @@ -1399,8 +1443,8 @@ t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:40 2020 -# Current time GMT: Tue Jul 21 14:28:40 2020 +# Current time local: Wed Jun 19 22:16:22 2019 +# Current time GMT: Wed Jun 19 08:16:22 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1792,8 +1836,8 @@ t/t080gofmt2.t ........... 1..3 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:40 2020 -# Current time GMT: Tue Jul 21 14:28:40 2020 +# Current time local: Wed Jun 19 22:16:22 2019 +# Current time GMT: Wed Jun 19 08:16:22 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1847,8 +1891,8 @@ t/t100roundtrip.t ........ 1..2 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:40 2020 -# Current time GMT: Tue Jul 21 14:28:40 2020 +# Current time local: Wed Jun 19 22:16:22 2019 +# Current time GMT: Wed Jun 19 08:16:22 2019 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml @@ -1876,8 +1920,8 @@ t/t110basic.t ............ 1..4 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:40 2020 -# Current time GMT: Tue Jul 21 14:28:40 2020 +# Current time local: Wed Jun 19 22:16:24 2019 +# Current time GMT: Wed Jun 19 08:16:24 2019 # Using Test.pm version 1.31 GO:0016604 GO:0016604 @@ -1895,8 +1939,8 @@ t/t130relations.t ........ 1..7 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:24 2019 +# Current time GMT: Wed Jun 19 08:16:24 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1910,8 +1954,8 @@ t/t140subgraph.t ......... 1..1 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:24 2019 +# Current time GMT: Wed Jun 19 08:16:24 2019 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 @@ -1923,8 +1967,8 @@ t/t150xref.t ............. 1..2 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:25 2019 +# Current time GMT: Wed Jun 19 08:16:25 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1932,8 +1976,8 @@ t/t160logicaldef.t ....... 1..5 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:25 2019 +# Current time GMT: Wed Jun 19 08:16:25 2019 # Using Test.pm version 1.31 ok 1 ns: biological_process @@ -1949,8 +1993,8 @@ t/t170chadoxml.t ......... 1..9 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:25 2019 +# Current time GMT: Wed Jun 19 08:16:25 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1965,8 +2009,8 @@ t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:26 2019 +# Current time GMT: Wed Jun 19 08:16:26 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -1981,8 +2025,8 @@ t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:41 2020 -# Current time GMT: Tue Jul 21 14:28:41 2020 +# Current time local: Wed Jun 19 22:16:26 2019 +# Current time GMT: Wed Jun 19 08:16:26 2019 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 @@ -1994,8 +2038,8 @@ t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:26 2019 +# Current time GMT: Wed Jun 19 08:16:26 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2003,8 +2047,8 @@ t/t210cache.t ............ 1..6 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:26 2019 +# Current time GMT: Wed Jun 19 08:16:26 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2016,8 +2060,8 @@ t/t220xref_esc.t ......... 1..6 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:27 2019 +# Current time GMT: Wed Jun 19 08:16:27 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2031,8 +2075,8 @@ t/t230term_expression.t .. 1..1 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:27 2019 +# Current time GMT: Wed Jun 19 08:16:27 2019 # Using Test.pm version 1.31 @@ -2127,8 +2171,8 @@ t/t240ga2obj.t ........... 1..3 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:27 2019 +# Current time GMT: Wed Jun 19 08:16:27 2019 # Using Test.pm version 1.31 ok 1 ok 2 @@ -2137,11 +2181,11 @@ t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:27 2019 +# Current time GMT: Wed Jun 19 08:16:27 2019 # Using Test.pm version 1.31 - + OBO_REL @@ -2190,8 +2234,8 @@ t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:28 2019 +# Current time GMT: Wed Jun 19 08:16:28 2019 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ @@ -2239,8 +2283,8 @@ t/t290disjoint.t ......... 1..2 # Running under perl version 5.028001 for linux -# Current time local: Tue Jul 21 02:28:42 2020 -# Current time GMT: Tue Jul 21 14:28:42 2020 +# Current time local: Wed Jun 19 22:16:28 2019 +# Current time GMT: Wed Jun 19 08:16:28 2019 # Using Test.pm version 1.31 ok 1 GO:0009987 @@ -2248,7 +2292,7 @@ ok 2 ok All tests successful. -Files=24, Tests=140, 3 wallclock secs ( 0.08 usr 0.02 sys + 2.76 cusr 0.06 csys = 2.92 CPU) +Files=24, Tests=140, 8 wallclock secs ( 0.25 usr 0.03 sys + 6.44 cusr 0.31 csys = 7.03 CPU) Result: PASS make[1]: Leaving directory '/build/libgo-perl-0.15' create-stamp debian/debhelper-build-stamp @@ -2257,220 +2301,220 @@ dh_testroot dh_prep dh_auto_install - make -j18 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j10 install DESTDIR=/build/libgo-perl-0.15/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libgo-perl-0.15' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/go-perl.pod -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Basic.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Utils.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2error_report.1p -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/map2slim.1p +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/go-perl.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2fmt.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-prolog.pl -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2pathlist +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdfxml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2owl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-apply-xslt +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-dag-summary.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2summary +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_html +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2tbl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2error_report -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2text_html +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-export-graph.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/map2slim +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2xml Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl +Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2rdf Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2chadoxml -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2prolog Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo_text -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2obo -Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2godb_prestore Installing /build/libgo-perl-0.15/debian/libgo-perl/usr/bin/go2sxpr make[1]: Leaving directory '/build/libgo-perl-0.15' debian/rules override_dh_install @@ -2499,12 +2543,14 @@ dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/30793/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30793/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/33386 and its subdirectories -I: Current time: Tue Jul 21 02:28:45 -12 2020 -I: pbuilder-time-stamp: 1595341725 +I: removing directory /srv/workspace/pbuilder/30793 and its subdirectories +I: Current time: Wed Jun 19 22:16:40 +14 2019 +I: pbuilder-time-stamp: 1560932200