Diff of the two buildlogs: -- --- b1/build.log 2019-06-24 16:22:09.357690596 +0000 +++ b2/build.log 2019-06-24 16:22:50.791774264 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 24 04:08:41 -12 2019 -I: pbuilder-time-stamp: 1561392521 +I: Current time: Mon Jul 27 12:45:11 +14 2020 +I: pbuilder-time-stamp: 1595803511 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +18,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Sat Aug 11 06:56:26 2018 -12 +gpgv: Signature made Sun Aug 12 08:56:26 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -32,6 +32,18 @@ dpkg-source: info: applying makefile_deps.patch I: using fakeroot in build. I: Installing the build-deps +I: user script /srv/workspace/pbuilder/7507/tmp/hooks/D01_modify_environment starting +disorder-fs debug: Running on profitbricks-build6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/7507/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -106,7 +118,7 @@ Get: 33 http://cdn-fastly.deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 34 http://cdn-fastly.deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 35 http://cdn-fastly.deb.debian.org/debian buster/main i386 pkg-config i386 0.29-6 [64.7 kB] -Fetched 19.4 MB in 18s (1108 kB/s) +Fetched 19.4 MB in 5s (3750 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) @@ -267,9 +279,41 @@ Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). -0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +The following additional packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl +The following NEW packages will be installed: + libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge +0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. +Need to get 59.5 kB of archives. +After this operation, 182 kB of additional disk space will be used. +Get:1 http://cdn-fastly.deb.debian.org/debian buster/main i386 libnumber-compare-perl all 0.03-1 [7642 B] +Get:2 http://cdn-fastly.deb.debian.org/debian buster/main i386 libtext-glob-perl all 0.10-1 [8362 B] +Get:3 http://cdn-fastly.deb.debian.org/debian buster/main i386 libfile-find-rule-perl all 0.34-1 [30.6 kB] +Get:4 http://cdn-fastly.deb.debian.org/debian buster/main i386 usrmerge all 21 [12.8 kB] +debconf: delaying package configuration, since apt-utils is not installed +Fetched 59.5 kB in 1s (103 kB/s) +Selecting previously unselected package libnumber-compare-perl. +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21301 files and directories currently installed.) +Preparing to unpack .../libnumber-compare-perl_0.03-1_all.deb ... +Unpacking libnumber-compare-perl (0.03-1) ... +Selecting previously unselected package libtext-glob-perl. +Preparing to unpack .../libtext-glob-perl_0.10-1_all.deb ... +Unpacking libtext-glob-perl (0.10-1) ... +Selecting previously unselected package libfile-find-rule-perl. +Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... +Unpacking libfile-find-rule-perl (0.34-1) ... +Selecting previously unselected package usrmerge. +Preparing to unpack .../archives/usrmerge_21_all.deb ... +Unpacking usrmerge (21) ... +Setting up libtext-glob-perl (0.10-1) ... +Setting up libnumber-compare-perl (0.03-1) ... +Setting up libfile-find-rule-perl (0.34-1) ... +Setting up usrmerge (21) ... +The system has been successfully converted. +Processing triggers for man-db (2.8.5-2) ... +Not building database; man-db/auto-update is not 'true'. I: Building the package -I: Running cd /build/libmuscle-3.7+4565/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/libmuscle-3.7+4565/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libmuscle dpkg-buildpackage: info: source version 3.7+4565-6 dpkg-buildpackage: info: source distribution unstable @@ -306,7 +350,7 @@ configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes -checking for a thread-safe mkdir -p... /bin/mkdir -p +checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes @@ -331,10 +375,10 @@ checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none -checking for a sed that does not truncate output... /bin/sed -checking for grep that handles long lines and -e... /bin/grep -checking for egrep... /bin/grep -E -checking for fgrep... /bin/grep -F +checking for a sed that does not truncate output... /usr/bin/sed +checking for grep that handles long lines and -e... /usr/bin/grep +checking for egrep... /usr/bin/grep -E +checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B @@ -353,8 +397,8 @@ checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no -checking for a working dd... /bin/dd -checking how to truncate binary pipes... /bin/dd bs=4096 count=1 +checking for a working dd... /usr/bin/dd +checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E @@ -413,394 +457,403 @@ config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build - make -j10 + make -j18 make[1]: Entering directory '/build/libmuscle-3.7+4565' Making all in libMUSCLE make[2]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligngivenpath.lo `test -f 'aligngivenpath.cpp' || echo './'`aligngivenpath.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-aligngivenpathsw.lo `test -f 'aligngivenpathsw.cpp' || echo './'`aligngivenpathsw.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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`test -f 'aln.cpp' || echo './'`aln.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-alpha.lo `test -f 'alpha.cpp' || echo './'`alpha.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 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compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cluster.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-blosumla.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c color.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-color.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clwwt.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpath.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clust.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clust.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aln.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aln.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-anchors.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-alpha.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cons.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwomsas.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligntwomsas.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffobjscore.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diffobjscore.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-alpha.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-anchors.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-bittraceback.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchoredpp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-anchoredpp.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpath.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligngivenpathsw.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwoprofs.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-aligntwoprofs.o bittraceback.cpp: In function 'const char* muscle::BitsToStr(char)': bittraceback.cpp:20:39: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] static TLSstr Str("xM xD xI"); ^ -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-blosumla.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -o libMUSCLE_la-bittraceback.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwomsas.cpp -o libMUSCLE_la-aligntwomsas.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosumla.cpp -o libMUSCLE_la-blosumla.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffpaths.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diffpaths.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-clust.lo `test -f 'clust.cpp' || echo './'`clust.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aln.cpp -o libMUSCLE_la-aln.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -o libMUSCLE_la-anchors.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-color.lo `test -f 'color.cpp' || echo './'`color.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clust.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clust.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -o libMUSCLE_la-aligngivenpathsw.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cluster.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-clwwt.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c color.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-color.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-cons.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpath.cpp -o libMUSCLE_la-aligngivenpath.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c bittraceback.cpp -o libMUSCLE_la-bittraceback.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-difftrees.lo `test -f 'difftrees.cpp' || echo './'`difftrees.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntwomsas.cpp -o libMUSCLE_la-aligntwomsas.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clwwt.cpp -o libMUSCLE_la-clwwt.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -o libMUSCLE_la-cons.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-diaglist.lo `test -f 'diaglist.cpp' || echo './'`diaglist.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aln.cpp -o libMUSCLE_la-aln.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c color.cpp -o libMUSCLE_la-color.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -o libMUSCLE_la-cons.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffpaths.cpp -o libMUSCLE_la-diffpaths.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-difftreese.lo `test -f 'difftreese.cpp' || echo './'`difftreese.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffobjscore.cpp -o libMUSCLE_la-diffobjscore.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diaglist.cpp -o libMUSCLE_la-diaglist.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distcalc.lo `test -f 'distcalc.cpp' || echo './'`distcalc.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchors.cpp -o libMUSCLE_la-anchors.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distfunc.lo `test -f 'distfunc.cpp' || echo './'`distfunc.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.cpp -o libMUSCLE_la-cluster.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-diffobjscore.lo `test -f 'diffobjscore.cpp' || echo './'`diffobjscore.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c clust.cpp -o libMUSCLE_la-clust.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c anchoredpp.cpp -o libMUSCLE_la-anchoredpp.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-diffpaths.lo `test -f 'diffpaths.cpp' || echo './'`diffpaths.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-difftrees.lo `test -f 'difftrees.cpp' || echo './'`difftrees.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diaglist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diaglist.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-difftreese.lo `test -f 'difftreese.cpp' || echo './'`difftreese.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffobjscore.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diffobjscore.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffpaths.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-diffpaths.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -o libMUSCLE_la-alpha.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftrees.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-difftrees.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distpwkimura.lo `test -f 'distpwkimura.cpp' || echo './'`distpwkimura.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c aligngivenpathsw.cpp -o libMUSCLE_la-aligngivenpathsw.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-domuscle.lo `test -f 'domuscle.cpp' || echo './'`domuscle.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-dosp.lo `test -f 'dosp.cpp' || echo './'`dosp.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-dpreglist.lo `test -f 'dpreglist.cpp' || echo './'`dpreglist.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftreese.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-difftreese.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffpaths.cpp -o libMUSCLE_la-diffpaths.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distcalc.lo `test -f 'distcalc.cpp' || echo './'`distcalc.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diaglist.cpp -o libMUSCLE_la-diaglist.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c diffobjscore.cpp -o libMUSCLE_la-diffobjscore.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftreese.cpp -o libMUSCLE_la-difftreese.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-distfunc.lo `test -f 'distfunc.cpp' || echo './'`distfunc.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 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-libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c difftrees.cpp -o libMUSCLE_la-difftrees.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c distcalc.cpp -o libMUSCLE_la-distcalc.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-enumtostr.lo `test -f 'enumtostr.cpp' || echo './'`enumtostr.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-estring.lo `test -f 'estring.cpp' || echo './'`estring.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c drawtree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-drawtree.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -c difftrees.cpp -o libMUSCLE_la-difftrees.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c edgelist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-edgelist.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumopts.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-enumopts.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumtostr.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-enumtostr.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c enumopts.cpp -o libMUSCLE_la-enumopts.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-fasta2.lo `test -f 'fasta2.cpp' || echo './'`fasta2.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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libMUSCLE_la-dpreglist.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c drawtree.cpp -o libMUSCLE_la-drawtree.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistnuc.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-fastdistnuc.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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--tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbaligndiag.lo `test -f 'glbaligndiag.cpp' || echo './'`glbaligndiag.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistjones.cpp -o libMUSCLE_la-fastdistjones.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-finddiags.lo `test -f 'finddiags.cpp' || echo './'`finddiags.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistmafft.cpp -o libMUSCLE_la-fastdistmafft.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-finddiagsn.lo `test -f 'finddiagsn.cpp' || echo './'`finddiagsn.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistkmer.cpp -o libMUSCLE_la-fastdistkmer.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c finddiags.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-finddiags.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistnuc.cpp -o libMUSCLE_la-fastdistnuc.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignsimple.lo `test -f 'glbalignsimple.cpp' || echo './'`glbalignsimple.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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'./'`glbalignsp.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalign.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastscorepath2.cpp -o libMUSCLE_la-fastscorepath2.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign352.cpp -o libMUSCLE_la-glbalign352.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignsimple.lo `test -f 'glbalignsimple.cpp' || echo './'`glbalignsimple.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignle.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignle.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbaligndiag.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbaligndiag.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -o libMUSCLE_la-glbalign.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistkmer.cpp -o libMUSCLE_la-fastdistkmer.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistjones.cpp -o libMUSCLE_la-fastdistjones.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c estring.cpp -o libMUSCLE_la-estring.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c finddiagsn.cpp -o libMUSCLE_la-finddiagsn.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignsp.lo `test -f 'glbalignsp.cpp' || echo './'`glbalignsp.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignspn.lo `test -f 'glbalignspn.cpp' || echo './'`glbalignspn.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistmafft.cpp -o libMUSCLE_la-fastdistmafft.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalignss.lo `test -f 'glbalignss.cpp' || echo './'`glbalignss.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c fastdistnuc.cpp -o libMUSCLE_la-fastdistnuc.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalndimer.lo `test -f 'glbalndimer.cpp' || echo './'`glbalndimer.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbaligndiag.cpp -o libMUSCLE_la-glbaligndiag.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globals.lo `test -f 'globals.cpp' || echo './'`globals.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsimple.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignsimple.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globalslinux.lo `test -f 'globalslinux.cpp' || echo './'`globalslinux.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-globalswin32.lo `test -f 'globalswin32.cpp' || echo './'`globalswin32.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignsp.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-glbalndimer.lo `test -f 'glbalndimer.cpp' || echo './'`glbalndimer.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer 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-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignspn.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-glbalignspn.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsimple.cpp -o libMUSCLE_la-glbalignsimple.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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--mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-henikoffweightpb.lo `test -f 'henikoffweightpb.cpp' || echo './'`henikoffweightpb.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsp.cpp -o libMUSCLE_la-glbalignsp.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignss.cpp -o libMUSCLE_la-glbalignss.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignle.cpp -o libMUSCLE_la-glbalignle.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c gonnet.cpp -o libMUSCLE_la-gonnet.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msa2.lo `test -f 'msa2.cpp' || echo './'`msa2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msa.lo `test -f 'msa.cpp' || echo './'`msa.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c hydro.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-hydro.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c henikoffweight.cpp -o libMUSCLE_la-henikoffweight.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalndimer.cpp -o libMUSCLE_la-glbalndimer.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c local.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-local.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c henikoffweightpb.cpp -o libMUSCLE_la-henikoffweightpb.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c html.cpp -o libMUSCLE_la-html.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsab.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-makerootmsab.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignsp.cpp -o libMUSCLE_la-glbalignsp.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignspn.cpp -o libMUSCLE_la-glbalignspn.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-makerootmsa.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalignss.cpp -o libMUSCLE_la-glbalignss.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c mhack.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-mhack.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-msa2.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msadistkimura.lo `test -f 'msadistkimura.cpp' || echo './'`msadistkimura.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c mpam200.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-mpam200.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-msa.lo `test -f 'msa.cpp' || echo './'`msa.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c hydro.cpp -o libMUSCLE_la-hydro.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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libMUSCLE_la-nwdasimple2.lo `test -f 'nwdasimple2.cpp' || echo './'`nwdasimple2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c local.cpp -o libMUSCLE_la-local.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msadistkimura.cpp -o libMUSCLE_la-msadistkimura.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasimple.lo `test -f 'nwdasimple.cpp' || echo './'`nwdasimple.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasmall.lo `test -f 'nwdasmall.cpp' || echo './'`nwdasmall.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsab.cpp -o libMUSCLE_la-makerootmsab.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-muscleout.lo `test -f 'muscleout.cpp' || echo './'`muscleout.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nucmx.lo `test -f 'nucmx.cpp' || echo './'`nucmx.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscleout.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-muscleout.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 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-fstack-protector-strong -Wformat -Werror=format-security -c makerootmsa.cpp -o libMUSCLE_la-makerootmsa.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasimple2.lo `test -f 'nwdasimple2.cpp' || echo './'`nwdasimple2.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-nwdasimple.lo `test -f 'nwdasimple.cpp' || echo './'`nwdasimple.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle.cpp -o libMUSCLE_la-muscle.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa2.cpp -o libMUSCLE_la-msa2.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msadistkimura.cpp -o libMUSCLE_la-msadistkimura.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nucmx.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nucmx.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscleout.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-muscleout.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c makerootmsa.cpp -o libMUSCLE_la-makerootmsa.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwdasimple2.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-nwdasimple.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer 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-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwdasimple2.cpp -o libMUSCLE_la-nwdasimple2.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy3.lo `test -f 'phy3.cpp' || echo './'`phy3.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy4.lo `test -f 'phy4.cpp' || echo './'`phy4.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phy.lo `test -f 'phy.cpp' || echo './'`phy.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-options.o options.cpp:19:2: warning: #warning "Command-line option value storage is not OpenMP safe yet" [-Wcpp] #warning "Command-line option value storage is not OpenMP safe yet" ^~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-outweights.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle.cpp -o libMUSCLE_la-muscle.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c onexception.cpp -o libMUSCLE_la-onexception.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscoreda.cpp -o libMUSCLE_la-objscoreda.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pam200mafft.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-pam200mafft.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-outweights.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-params.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phyfromclust.lo `test -f 'phyfromclust.cpp' || echo './'`phyfromclust.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-phyfromfile.lo `test -f 'phyfromfile.cpp' || echo './'`phyfromfile.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy2.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscore.cpp -o libMUSCLE_la-objscore.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-physeq.lo `test -f 'physeq.cpp' || echo './'`physeq.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pam200mafft.cpp -o libMUSCLE_la-pam200mafft.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy3.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy3.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -o libMUSCLE_la-options.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy4.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phy4.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c outweights.cpp -o libMUSCLE_la-outweights.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-params.lo `test -f 'params.cpp' || echo './'`params.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 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-DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa2.cpp -o libMUSCLE_la-msa2.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-ppscore.lo `test -f 'ppscore.cpp' || echo './'`ppscore.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profdb.lo `test -f 'profdb.cpp' || echo './'`profdb.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c physeq.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-physeq.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.cpp -o libMUSCLE_la-msa.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c nwsmall.cpp -o libMUSCLE_la-nwsmall.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy2.cpp -o libMUSCLE_la-phy2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phytofile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-phytofile.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c posgap.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-posgap.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phyfromclust.cpp -o libMUSCLE_la-phyfromclust.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c objscore2.cpp -o libMUSCLE_la-objscore2.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phyfromfile.cpp -o libMUSCLE_la-phyfromfile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c ppscore.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-ppscore.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profdb.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profdb.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profile.lo `test -f 'profile.cpp' || echo './'`profile.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c posgap.cpp -o libMUSCLE_la-posgap.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy4.cpp -o libMUSCLE_la-phy4.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c physeq.cpp -o libMUSCLE_la-physeq.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phytofile.cpp -o libMUSCLE_la-phytofile.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profilefrommsa.lo `test -f 'profilefrommsa.cpp' || echo './'`profilefrommsa.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progalign.lo `test -f 'progalign.cpp' || echo './'`progalign.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy.cpp -o libMUSCLE_la-phy.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progress.lo `test -f 'progress.cpp' || echo './'`progress.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profdb.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profdb.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-profilefrommsa.lo `test -f 'profilefrommsa.cpp' || echo './'`profilefrommsa.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-profile.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-progressivealign.lo `test -f 'progressivealign.cpp' || echo './'`progressivealign.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phytofile.cpp -o libMUSCLE_la-phytofile.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c phy3.cpp -o libMUSCLE_la-phy3.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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`test -f 'realigndiffs.cpp' || echo './'`realigndiffs.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-realigndiffse.lo `test -f 'realigndiffse.cpp' || echo './'`realigndiffse.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" 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>/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffs.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-realigndiffs.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refine.lo `test -f 'refine.cpp' || echo './'`refine.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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'refinesubfams.cpp' || echo './'`refinesubfams.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progressivealign.cpp -o libMUSCLE_la-progressivealign.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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-fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffs.cpp -o libMUSCLE_la-realigndiffs.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -o libMUSCLE_la-pwpath.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffse.cpp -o libMUSCLE_la-realigndiffse.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinetree.lo `test -f 'refinetree.cpp' || echo './'`refinetree.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c profilefrommsa.cpp -o libMUSCLE_la-profilefrommsa.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c readmx.cpp -o libMUSCLE_la-readmx.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinetree.lo `test -f 'refinetree.cpp' || echo './'`refinetree.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinehoriz.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinehoriz.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinetreee.lo `test -f 'refinetreee.cpp' || echo './'`refinetreee.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progalign.cpp -o libMUSCLE_la-progalign.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c progressivealign.cpp -o libMUSCLE_la-progressivealign.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinesubfams.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinesubfams.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinetreee.lo `test -f 'refinetreee.cpp' || echo './'`refinetreee.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinevert.lo `test -f 'refinevert.cpp' || echo './'`refinevert.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinew.lo `test -f 'refinew.cpp' || echo './'`refinew.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffs.cpp -o libMUSCLE_la-realigndiffs.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-savebest.lo `test -f 'savebest.cpp' || echo './'`savebest.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scoregaps.lo `test -f 'scoregaps.cpp' || echo './'`scoregaps.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinetree.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scorehistory.lo `test -f 'scorehistory.cpp' || echo './'`scorehistory.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -o libMUSCLE_la-pwpath.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetreee.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinetreee.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinevert.lo `test -f 'refinevert.cpp' || echo './'`refinevert.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-refinew.lo `test -f 'refinew.cpp' || echo './'`refinew.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refine.cpp -o libMUSCLE_la-refine.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c realigndiffse.cpp -o libMUSCLE_la-realigndiffse.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinevert.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinevert.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-savebest.lo `test -f 'savebest.cpp' || echo './'`savebest.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinew.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-refinew.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetreee.cpp -o libMUSCLE_la-refinetreee.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinehoriz.cpp -o libMUSCLE_la-refinehoriz.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinesubfams.cpp -o libMUSCLE_la-refinesubfams.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refine.cpp -o libMUSCLE_la-refine.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c savebest.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-savebest.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetree.cpp -o libMUSCLE_la-refinetree.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scoregaps.lo `test -f 'scoregaps.cpp' || echo './'`scoregaps.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scorepp.lo `test -f 'scorepp.cpp' || echo './'`scorepp.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoregaps.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scoregaps.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c savebest.cpp -o libMUSCLE_la-savebest.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scorehistory.lo `test -f 'scorehistory.cpp' || echo './'`scorehistory.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scorepp.lo `test -f 'scorepp.cpp' || echo './'`scorepp.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinevert.cpp -o libMUSCLE_la-refinevert.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 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scoregaps.cpp -o libMUSCLE_la-scoregaps.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setblosumweights.lo `test -f 'setblosumweights.cpp' || echo './'`setblosumweights.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setgscweights.lo `test -f 'setgscweights.cpp' || echo './'`setgscweights.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-seq.lo `test -f 'seq.cpp' || echo './'`seq.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorehistory.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scorehistory.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinehoriz.cpp -o libMUSCLE_la-refinehoriz.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-seqvect.lo `test -f 'seqvect.cpp' || echo './'`seqvect.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c savebest.cpp -o libMUSCLE_la-savebest.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setblosumweights.lo `test -f 'setblosumweights.cpp' || echo './'`setblosumweights.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetreee.cpp -o libMUSCLE_la-refinetreee.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinesubfams.cpp -o libMUSCLE_la-refinesubfams.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorepp.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scorepp.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setnewhandler.lo `test -f 'setnewhandler.cpp' || echo './'`setnewhandler.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinetree.cpp -o libMUSCLE_la-refinetree.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoregaps.cpp -o libMUSCLE_la-scoregaps.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setgscweights.lo `test -f 'setgscweights.cpp' || echo './'`setgscweights.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-seq.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorehistory.cpp -o libMUSCLE_la-scorehistory.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-setnewhandler.lo `test -f 'setnewhandler.cpp' || echo './'`setnewhandler.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 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-fPIC -DPIC -o .libs/libMUSCLE_la-setgscweights.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setblosumweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setblosumweights.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 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-D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-stabilize.lo `test -f 'stabilize.cpp' || echo './'`stabilize.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfam.lo `test -f 'subfam.cpp' || echo './'`subfam.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setgscweights.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfams.lo `test -f 'subfams.cpp' || echo './'`subfams.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 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setblosumweights.cpp -o libMUSCLE_la-setblosumweights.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scorehistory.cpp -o libMUSCLE_la-scorehistory.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -o libMUSCLE_la-setgscweights.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setnewhandler.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-setnewhandler.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-sptest.lo `test -f 'sptest.cpp' || echo './'`sptest.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-termgaps.lo `test -f 'termgaps.cpp' || echo './'`termgaps.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-textfile.lo `test -f 'textfile.cpp' || echo './'`textfile.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setgscweights.cpp -o libMUSCLE_la-setgscweights.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-threewaywt.lo `test -f 'threewaywt.cpp' || echo './'`threewaywt.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-spfast.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-stabilize.lo `test -f 'stabilize.cpp' || echo './'`stabilize.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-traceback.lo `test -f 'traceback.cpp' || echo './'`traceback.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sptest.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c setnewhandler.cpp -o libMUSCLE_la-setnewhandler.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfam.lo `test -f 'subfam.cpp' || echo './'`subfam.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-subfams.lo `test -f 'subfams.cpp' || echo './'`subfams.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-sw.lo `test -f 'sw.cpp' || echo './'`sw.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-stabilize.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfam.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tracebackopt.lo `test -f 'tracebackopt.cpp' || echo './'`tracebackopt.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfams.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sw.o spfast.cpp: In function 'char* muscle::GapTypeToStr(int)': spfast.cpp:20:18: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] case LL: return "LL"; @@ -817,85 +870,76 @@ spfast.cpp:26:9: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] return "?"; ^~~ -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinew.cpp -o libMUSCLE_la-refinew.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-termgaps.lo `test -f 'termgaps.cpp' || echo './'`termgaps.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sptest.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-stabilize.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfam.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-sw.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-subfams.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c termgaps.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-termgaps.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -o libMUSCLE_la-spfast.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tracebacksw.lo `test -f 'tracebacksw.cpp' || echo './'`tracebacksw.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfams.cpp -o libMUSCLE_la-subfams.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -o libMUSCLE_la-params.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c stabilize.cpp -o libMUSCLE_la-stabilize.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -o libMUSCLE_la-seq.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-textfile.lo `test -f 'textfile.cpp' || echo './'`textfile.cpp +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-treefrommsa.lo `test -f 'treefrommsa.cpp' || echo './'`treefrommsa.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c textfile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-textfile.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c threewaywt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-threewaywt.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-typetostr.lo `test -f 'typetostr.cpp' || echo './'`typetostr.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c traceback.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-traceback.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-upgma2.lo `test -f 'upgma2.cpp' || echo './'`upgma2.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebackopt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tracebackopt.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-usage.lo `test -f 'usage.cpp' || echo './'`usage.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c termgaps.cpp -o libMUSCLE_la-termgaps.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c spfast.cpp -o libMUSCLE_la-spfast.o >/dev/null 2>&1 subfam.cpp: In function 'void muscle::AlignSubFam(muscle::SeqVect&, const muscle::Tree&, unsigned int, muscle::MSA&)': subfam.cpp:175:8: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(CmdLine); ~~~~~~^~~~~~~~~ -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c termgaps.cpp -o libMUSCLE_la-termgaps.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-threewaywt.lo `test -f 'threewaywt.cpp' || echo './'`threewaywt.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -o libMUSCLE_la-sptest.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c textfile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-textfile.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sw.cpp -o libMUSCLE_la-sw.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-traceback.lo `test -f 'traceback.cpp' || echo './'`traceback.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c threewaywt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-threewaywt.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tracebackopt.lo `test -f 'tracebackopt.cpp' || echo './'`tracebackopt.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c traceback.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-traceback.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -o libMUSCLE_la-seqvect.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebackopt.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tracebackopt.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c textfile.cpp -o libMUSCLE_la-textfile.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tracebacksw.lo `test -f 'tracebacksw.cpp' || echo './'`tracebacksw.cpp -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-treefrommsa.lo `test -f 'treefrommsa.cpp' || echo './'`treefrommsa.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebackopt.cpp -o libMUSCLE_la-tracebackopt.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c traceback.cpp -o libMUSCLE_la-traceback.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebacksw.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tracebacksw.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c sptest.cpp -o libMUSCLE_la-sptest.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c treefrommsa.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-treefrommsa.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-typetostr.lo `test -f 'typetostr.cpp' || echo './'`typetostr.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c threewaywt.cpp -o libMUSCLE_la-threewaywt.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -o libMUSCLE_la-subfam.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-upgma2.lo `test -f 'upgma2.cpp' || echo './'`upgma2.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebackopt.cpp -o libMUSCLE_la-tracebackopt.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c textfile.cpp -o libMUSCLE_la-textfile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c typetostr.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-typetostr.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-usage.lo `test -f 'usage.cpp' || echo './'`usage.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tracebacksw.cpp -o libMUSCLE_la-tracebacksw.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma2.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-upgma2.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -o libMUSCLE_la-seq.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-validateids.lo `test -f 'validateids.cpp' || echo './'`validateids.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c refinew.cpp -o libMUSCLE_la-refinew.o >/dev/null 2>&1 typetostr.cpp: In function 'const char* muscle::SecsToStr(long unsigned int)': typetostr.cpp:15:21: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] sprintf(Str.get(), "%02d:%02d:%02d", hh, mm, ss); ^~~~~~~~~~~~~~~~ ~~ typetostr.cpp:15:21: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] typetostr.cpp:15:21: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c traceback.cpp -o libMUSCLE_la-traceback.o >/dev/null 2>&1 +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-vtml2.lo `test -f 'vtml2.cpp' || echo './'`vtml2.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-usage.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -o libMUSCLE_la-seqvect.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c typetostr.cpp -o libMUSCLE_la-typetostr.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-validateids.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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--tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tomhydro.lo `test -f 'tomhydro.cpp' || echo './'`tomhydro.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c writescorefile.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-writescorefile.o -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-scoredist.lo `test -f 'scoredist.cpp' || echo './'`scoredist.cpp +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c vtml2.cpp -o libMUSCLE_la-vtml2.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-blosum62.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c maketree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-maketree.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalsother.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-globalsother.o -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -o libMUSCLE_la-validateids.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libMUSCLE_la-tomhydro.lo `test -f 'tomhydro.cpp' || echo './'`tomhydro.cpp -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c vtml2.cpp -o libMUSCLE_la-vtml2.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c subfam.cpp -o libMUSCLE_la-subfam.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o libMUSCLE_la-blosum62.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalsother.cpp -o libMUSCLE_la-globalsother.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c scoredist.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-scoredist.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c maketree.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-maketree.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma2.cpp -o libMUSCLE_la-upgma2.o >/dev/null 2>&1 -libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c writescorefile.cpp -o libMUSCLE_la-writescorefile.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c validateids.cpp -o libMUSCLE_la-validateids.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tomhydro.cpp -fPIC -DPIC -o .libs/libMUSCLE_la-tomhydro.o +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c globalsother.cpp -o libMUSCLE_la-globalsother.o >/dev/null 2>&1 +libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c writescorefile.cpp -o libMUSCLE_la-writescorefile.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c maketree.cpp -o libMUSCLE_la-maketree.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DSTDC_HEADERS=1 -DTIME_WITH_SYS_TIME=1 -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -D_LIB -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -c tomhydro.cpp -o libMUSCLE_la-tomhydro.o >/dev/null 2>&1 libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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.libs/libMUSCLE_la-profile.o .libs/libMUSCLE_la-profilefrommsa.o .libs/libMUSCLE_la-progalign.o .libs/libMUSCLE_la-progress.o .libs/libMUSCLE_la-progressivealign.o .libs/libMUSCLE_la-pwpath.o .libs/libMUSCLE_la-readmx.o .libs/libMUSCLE_la-realigndiffs.o .libs/libMUSCLE_la-realigndiffse.o .libs/libMUSCLE_la-refine.o .libs/libMUSCLE_la-refinehoriz.o .libs/libMUSCLE_la-refinesubfams.o .libs/libMUSCLE_la-refinetree.o .libs/libMUSCLE_la-refinetreee.o .libs/libMUSCLE_la-refinevert.o .libs/libMUSCLE_la-refinew.o .libs/libMUSCLE_la-savebest.o .libs/libMUSCLE_la-scoregaps.o .libs/libMUSCLE_la-scorehistory.o .libs/libMUSCLE_la-scorepp.o .libs/libMUSCLE_la-seq.o .libs/libMUSCLE_la-seqvect.o .libs/libMUSCLE_la-setblosumweights.o .libs/libMUSCLE_la-setgscweights.o .libs/libMUSCLE_la-setnewhandler.o .libs/libMUSCLE_la-spfast.o .libs/libMUSCLE_la-sptest.o .libs/libMUSCLE_la-stabilize.o .libs/libMUSCLE_la-subfam.o .libs/libMUSCLE_la-subfams.o .libs/libMUSCLE_la-sw.o .libs/libMUSCLE_la-termgaps.o .libs/libMUSCLE_la-textfile.o .libs/libMUSCLE_la-threewaywt.o .libs/libMUSCLE_la-traceback.o .libs/libMUSCLE_la-tracebackopt.o .libs/libMUSCLE_la-tracebacksw.o .libs/libMUSCLE_la-treefrommsa.o .libs/libMUSCLE_la-typetostr.o .libs/libMUSCLE_la-upgma2.o .libs/libMUSCLE_la-usage.o .libs/libMUSCLE_la-validateids.o .libs/libMUSCLE_la-vtml2.o .libs/libMUSCLE_la-writescorefile.o .libs/libMUSCLE_la-blosum62.o .libs/libMUSCLE_la-globalsother.o .libs/libMUSCLE_la-maketree.o .libs/libMUSCLE_la-scoredist.o .libs/libMUSCLE_la-tomhydro.o -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -O2 -fopenmp -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libMUSCLE.so.1 -o .libs/libMUSCLE.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libMUSCLE.so.1" && ln -s "libMUSCLE.so.1.0.0" "libMUSCLE.so.1") libtool: link: (cd ".libs" && rm -f "libMUSCLE.so" && ln -s "libMUSCLE.so.1.0.0" "libMUSCLE.so") @@ -903,7 +947,7 @@ ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libMUSCLE.a libtool: link: ( cd ".libs" && rm -f "libMUSCLE.la" && ln -s "../libMUSCLE.la" "libMUSCLE.la" ) -/bin/bash ../libtool --tag=CXX --mode=link g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z,relro -Wl,-z,now -o muscle main.o libMUSCLE.la +/bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z,relro -Wl,-z,now -o muscle main.o libMUSCLE.la libtool: link: g++ -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -DNDEBUG=1 -fopenmp -g -O2 -ffile-prefix-map=/build/libmuscle-3.7+4565=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -funroll-loops -fomit-frame-pointer -ftree-vectorize -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/muscle main.o ./.libs/libMUSCLE.so -fopenmp make[2]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Entering directory '/build/libmuscle-3.7+4565' @@ -911,7 +955,7 @@ make[2]: Leaving directory '/build/libmuscle-3.7+4565' make[1]: Leaving directory '/build/libmuscle-3.7+4565' dh_auto_test - make -j10 check VERBOSE=1 + make -j18 check VERBOSE=1 make[1]: Entering directory '/build/libmuscle-3.7+4565' Making check in libMUSCLE make[2]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' @@ -932,8 +976,8 @@ Making install in libMUSCLE make[2]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' make[3]: Entering directory '/build/libmuscle-3.7+4565/libMUSCLE' - /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libMUSCLE.la '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu' + /usr/bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libMUSCLE.la '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libMUSCLE.so.1.0.0 /build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.so.1.0.0 libtool: install: (cd /build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libMUSCLE.so.1.0.0 libMUSCLE.so.1 || { rm -f libMUSCLE.so.1 && ln -s libMUSCLE.so.1.0.0 libMUSCLE.so.1; }; }) libtool: install: (cd /build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libMUSCLE.so.1.0.0 libMUSCLE.so || { rm -f libMUSCLE.so && ln -s libMUSCLE.so.1.0.0 libMUSCLE.so; }; }) @@ -942,18 +986,18 @@ libtool: install: chmod 644 /build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.a libtool: install: ranlib /build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu/libMUSCLE.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' - /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c muscle '/build/libmuscle-3.7+4565/debian/tmp/usr/bin' + /usr/bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c muscle '/build/libmuscle-3.7+4565/debian/tmp/usr/bin' libtool: warning: 'libMUSCLE.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/muscle /build/libmuscle-3.7+4565/debian/tmp/usr/bin/muscle - /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/include/libMUSCLE' + /usr/bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/include/libMUSCLE' /usr/bin/install -c -m 644 alpha.h cluster.h clust.h clustsetdf.h clustset.h clustsetmsa.h diaglist.h distcalc.h distfunc.h dpregionlist.h dpreglist.h edgelist.h enumopts.h enums.h estring.h gapscoredimer.h gonnet.h intmath.h msadist.h msa.h muscle.h objscore.h params.h profile.h pwpath.h refine.h scorehistory.h seq.h seqvect.h textfile.h timing.h tree.h types.h unixio.h threadstorage.h '/build/libmuscle-3.7+4565/debian/tmp/usr/include/libMUSCLE' make[3]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Leaving directory '/build/libmuscle-3.7+4565/libMUSCLE' make[2]: Entering directory '/build/libmuscle-3.7+4565' make[3]: Entering directory '/build/libmuscle-3.7+4565' make[3]: Nothing to be done for 'install-exec-am'. - /bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' + /usr/bin/mkdir -p '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libMUSCLE.pc '/build/libmuscle-3.7+4565/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libmuscle-3.7+4565' make[2]: Leaving directory '/build/libmuscle-3.7+4565' @@ -998,7 +1042,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libmuscle1/DEBIAN/symbols doesn't match completely debian/libmuscle1.symbols --- debian/libmuscle1.symbols (libmuscle1_3.7+4565-6_i386) -+++ dpkg-gensymbolsLv3RW5 2019-06-24 04:21:59.594069190 -1200 ++++ dpkg-gensymbols2_Wo6m 2020-07-27 12:45:48.012175130 +1400 @@ -840,7 +840,8 @@ _ZNK6muscle8EdgeList8GetCountEv@Base 3.7+4565 _ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 3.7+4565 @@ -1014,21 +1058,23 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libmuscle-dev' in '../libmuscle-dev_3.7+4565-6_i386.deb'. dpkg-deb: building package 'libmuscle1' in '../libmuscle1_3.7+4565-6_i386.deb'. dpkg-deb: building package 'libmuscle1-dbgsym' in '../libmuscle1-dbgsym_3.7+4565-6_i386.deb'. -dpkg-deb: building package 'libmuscle-dev' in '../libmuscle-dev_3.7+4565-6_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libmuscle_3.7+4565-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration +I: user script /srv/workspace/pbuilder/7507/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/7507/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7166 and its subdirectories -I: Current time: Mon Jun 24 04:22:09 -12 2019 -I: pbuilder-time-stamp: 1561393329 +I: removing directory /srv/workspace/pbuilder/7507 and its subdirectories +I: Current time: Mon Jul 27 12:45:50 +14 2020 +I: pbuilder-time-stamp: 1595803550