Diff of the two buildlogs: -- --- b1/build.log 2020-07-15 20:02:53.078497855 +0000 +++ b2/build.log 2020-07-15 20:34:43.748617825 +0000 @@ -1,6 +1,9 @@ -I: pbuilder: network access will be disabled during build -I: Current time: Tue Aug 17 14:20:09 -12 2021 -I: pbuilder-time-stamp: 1629253209 +W: cgroups are not available on the host, not using them. +unshare: unshare failed: Cannot allocate memory +W: pbuilder: unshare CLONE_NEWNET not available +I: pbuilder: network access is available during build! +I: Current time: Thu Jul 16 10:03:52 +14 2020 +I: pbuilder-time-stamp: 1594843432 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration @@ -18,7 +21,7 @@ I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error -gpgv: Signature made Tue Jan 22 07:41:16 2019 -12 +gpgv: Signature made Wed Jan 23 09:41:16 2019 +14 gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./liggghts_3.8.0+repack1-4.dsc @@ -29,138 +32,171 @@ dpkg-source: info: applying 01_add_cmake_files.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/56847/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/17450/tmp/hooks/D01_modify_environment starting +debug: Running on profitbricks-build12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' +Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' +Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' +Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/17450/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/17450/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=18' - DISTRIBUTION='' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.0.3(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' + DIRSTACK=() + DISTRIBUTION= + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='2bddb7c6ffef452f9be16be6fdd27145' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='56847' - PS1='# ' - PS2='> ' + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=17450 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.exPzEDBkX0/pbuilderrc_5qsZ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.exPzEDBkX0/b1 --logfile b1/build.log liggghts_3.8.0+repack1-4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.exPzEDBkX0/pbuilderrc_EsQB --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.exPzEDBkX0/b2 --logfile b2/build.log liggghts_3.8.0+repack1-4.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux profitbricks-build6-i386 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 4.19.0-9-686-pae #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) i686 GNU/Linux I: ls -l /bin total 5476 - -rwxr-xr-x 1 root root 1302248 Apr 17 2019 bash - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bunzip2 - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzcat - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep - -rwxr-xr-x 3 root root 38280 Jul 10 2019 bzip2 - -rwxr-xr-x 1 root root 17768 Jul 10 2019 bzip2recover - lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore - -rwxr-xr-x 1 root root 38692 Feb 28 2019 cat - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chgrp - -rwxr-xr-x 1 root root 63268 Feb 28 2019 chmod - -rwxr-xr-x 1 root root 75588 Feb 28 2019 chown - -rwxr-xr-x 1 root root 153732 Feb 28 2019 cp - -rwxr-xr-x 1 root root 132820 Jan 17 2019 dash - -rwxr-xr-x 1 root root 120676 Feb 28 2019 date - -rwxr-xr-x 1 root root 92040 Feb 28 2019 dd - -rwxr-xr-x 1 root root 100620 Feb 28 2019 df - -rwxr-xr-x 1 root root 149736 Feb 28 2019 dir - -rwxr-xr-x 1 root root 79412 Jan 9 2019 dmesg - lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname - -rwxr-xr-x 1 root root 34532 Feb 28 2019 echo - -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep - -rwxr-xr-x 1 root root 34532 Feb 28 2019 false - -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep - -rwxr-xr-x 1 root root 67700 Jan 9 2019 findmnt - -rwsr-xr-x 1 root root 30112 Apr 22 2020 fusermount - -rwxr-xr-x 1 root root 206392 Jan 7 2019 grep - -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip - -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe - -rwxr-xr-x 1 root root 100952 Jan 5 2019 gzip - -rwxr-xr-x 1 root root 21916 Sep 26 2018 hostname - -rwxr-xr-x 1 root root 79752 Feb 28 2019 ln - -rwxr-xr-x 1 root root 55400 Jul 26 2018 login - -rwxr-xr-x 1 root root 149736 Feb 28 2019 ls - -rwxr-xr-x 1 root root 112032 Jan 9 2019 lsblk - -rwxr-xr-x 1 root root 87972 Feb 28 2019 mkdir - -rwxr-xr-x 1 root root 79748 Feb 28 2019 mknod - -rwxr-xr-x 1 root root 46916 Feb 28 2019 mktemp - -rwxr-xr-x 1 root root 42348 Jan 9 2019 more - -rwsr-xr-x 1 root root 50592 Jan 9 2019 mount - -rwxr-xr-x 1 root root 13724 Jan 9 2019 mountpoint - -rwxr-xr-x 1 root root 157832 Feb 28 2019 mv - lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 38660 Feb 28 2019 pwd - lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash - -rwxr-xr-x 1 root root 46852 Feb 28 2019 readlink - -rwxr-xr-x 1 root root 75588 Feb 28 2019 rm - -rwxr-xr-x 1 root root 42756 Feb 28 2019 rmdir - -rwxr-xr-x 1 root root 22276 Jan 21 2019 run-parts - -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed - lrwxrwxrwx 1 root root 4 Aug 16 02:47 sh -> dash - -rwxr-xr-x 1 root root 34532 Feb 28 2019 sleep - -rwxr-xr-x 1 root root 79652 Feb 28 2019 stty - -rwsr-xr-x 1 root root 71072 Jan 9 2019 su - -rwxr-xr-x 1 root root 34564 Feb 28 2019 sync - -rwxr-xr-x 1 root root 504024 Apr 23 2019 tar - -rwxr-xr-x 1 root root 13860 Jan 21 2019 tempfile - -rwxr-xr-x 1 root root 104292 Feb 28 2019 touch - -rwxr-xr-x 1 root root 34532 Feb 28 2019 true - -rwxr-xr-x 1 root root 17768 Apr 22 2020 ulockmgr_server - -rwsr-xr-x 1 root root 30108 Jan 9 2019 umount - -rwxr-xr-x 1 root root 34532 Feb 28 2019 uname - -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress - -rwxr-xr-x 1 root root 149736 Feb 28 2019 vdir - -rwxr-xr-x 1 root root 34208 Jan 9 2019 wdctl - -rwxr-xr-x 1 root root 946 Jan 21 2019 which - lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat - -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp - -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff - -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep - -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep - -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce - -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep - -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless - -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore - -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew -I: user script /srv/workspace/pbuilder/56847/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep + -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 + -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover + lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore + -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp + -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod + -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown + -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp + -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash + -rwxr-xr-x 1 root root 120676 Mar 1 2019 date + -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd + -rwxr-xr-x 1 root root 100620 Mar 1 2019 df + -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir + -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg + lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname + -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo + -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep + -rwxr-xr-x 1 root root 34532 Mar 1 2019 false + -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep + -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt + -rwsr-xr-x 1 root root 30112 Apr 23 09:38 fusermount + -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep + -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip + -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe + -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip + -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname + -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln + -rwxr-xr-x 1 root root 55400 Jul 27 2018 login + -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls + -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk + -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir + -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod + -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp + -rwxr-xr-x 1 root root 42348 Jan 10 2019 more + -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount + -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint + -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv + lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd + lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash + -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink + -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm + -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir + -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts + -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed + lrwxrwxrwx 1 root root 4 Jul 16 10:06 sh -> bash + lrwxrwxrwx 1 root root 4 Jul 14 22:25 sh.distrib -> dash + -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep + -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty + -rwsr-xr-x 1 root root 71072 Jan 10 2019 su + -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync + -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar + -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile + -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch + -rwxr-xr-x 1 root root 34532 Mar 1 2019 true + -rwxr-xr-x 1 root root 17768 Apr 23 09:38 ulockmgr_server + -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount + -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname + -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress + -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir + -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl + -rwxr-xr-x 1 root root 946 Jan 22 2019 which + lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat + -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp + -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff + -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep + -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep + -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce + -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep + -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless + -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore + -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew +I: user script /srv/workspace/pbuilder/17450/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -733,7 +769,7 @@ Get: 519 http://deb.debian.org/debian buster/main i386 tk-dev i386 8.6.9+1 [5492 B] Get: 520 http://deb.debian.org/debian buster/main i386 vtk6 i386 6.3.0+dfsg2-2+b5 [197 kB] Get: 521 http://deb.debian.org/debian buster/main i386 libvtk6-dev i386 6.3.0+dfsg2-2+b5 [2149 kB] -Fetched 316 MB in 7s (48.1 MB/s) +Fetched 316 MB in 2min 31s (2092 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) @@ -2863,7 +2899,7 @@ fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/liggghts-3.8.0+repack1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b +I: Running cd /build/liggghts-3.8.0+repack1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package liggghts dpkg-buildpackage: info: source version 3.8.0+repack1-4 dpkg-buildpackage: info: source distribution unstable @@ -2934,7 +2970,7 @@ -- Build files have been written to: /build/liggghts-3.8.0+repack1/debian/build dh_auto_build -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build - cd debian/build && make -j18 "INSTALL=install --strip-program=true" + cd debian/build && make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-3.8.0+repack1 -B/build/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles/progress.marks @@ -2962,42 +2998,26 @@ make[3]: Leaving directory '/build/liggghts-3.8.0+repack1/debian/build' make -f src/CMakeFiles/libliggghts.dir/build.make src/CMakeFiles/libliggghts.dir/build make[3]: Entering directory '/build/liggghts-3.8.0+repack1/debian/build' -[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom.cpp.o -[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o -[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_tri.cpp -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o +[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec.cpp.o +[ 0%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o +[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o +[ 1%] Building CXX object src/CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o +[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o +[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec.cpp +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_map.cpp.o +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom.cpp.o +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/angle_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/angle.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/angle.cpp.o -c /build/liggghts-3.8.0+repack1/src/angle.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom.cpp -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_map.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_map.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_atomic.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_atomic.cpp -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/angle.cpp.o -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec.cpp -[ 2%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/angle.cpp.o -c /build/liggghts-3.8.0+repack1/src/angle.cpp -[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_charge.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_charge.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_ellipsoid.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_ellipsoid.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_full.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_full.cpp cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_hybrid.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_line.cpp -[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_map.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_molecular.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_map.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_map.cpp -[ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sph.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sph_var.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere_w.cpp -[ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_superquadric.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere.cpp /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:363:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3008,22 +3028,28 @@ /build/liggghts-3.8.0+repack1/src/angle_hybrid.cpp:375:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_line.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_line.cpp +[ 3%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_molecular.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_molecular.cpp +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sph.cpp +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sph_var.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sph_var.cpp +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere.cpp +[ 4%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_sphere_w.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_sphere_w.cpp +[ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_superquadric.cpp +[ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/atom_vec_tri.cpp.o -c /build/liggghts-3.8.0+repack1/src/atom_vec_tri.cpp [ 5%] Building CXX object src/CMakeFiles/libliggghts.dir/bond.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/bond.cpp.o -c /build/liggghts-3.8.0+repack1/src/bond.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/bond_harmonic.cpp.o -c /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp [ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/bond_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp -[ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bounding_box.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/bounding_box.cpp.o -c /build/liggghts-3.8.0+repack1/src/bounding_box.cpp -[ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling.cpp -[ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling_file.cpp -[ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling_mpi.cpp -[ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_regionmodel_none.cpp /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:200:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&k[1],sizeof(double),atom->nbondtypes,fp); @@ -3031,6 +3057,10 @@ /build/liggghts-3.8.0+repack1/src/bond_harmonic.cpp:201:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&r0[1],sizeof(double),atom->nbondtypes,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 6%] Building CXX object src/CMakeFiles/libliggghts.dir/bounding_box.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/bounding_box.cpp.o -c /build/liggghts-3.8.0+repack1/src/bounding_box.cpp +[ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling.cpp /build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:351:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3041,6 +3071,12 @@ /build/liggghts-3.8.0+repack1/src/bond_hybrid.cpp:363:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_file.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling_file.cpp +[ 7%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_datacoupling_mpi.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_datacoupling_mpi.cpp +[ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/cfd_regionmodel_none.cpp.o -c /build/liggghts-3.8.0+repack1/src/cfd_regionmodel_none.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/change_box.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/change_box.cpp.o -c /build/liggghts-3.8.0+repack1/src/change_box.cpp [ 8%] Building CXX object src/CMakeFiles/libliggghts.dir/citeme.cpp.o @@ -3053,9 +3089,9 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_atom_molecule.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_atom_molecule.cpp [ 9%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_bond_local.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_bond_local.cpp -[ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_centro_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_centro_atom.cpp +[ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_cluster_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_cluster_atom.cpp [ 10%] Building CXX object src/CMakeFiles/libliggghts.dir/compute_cna_atom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/compute_cna_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/compute_cna_atom.cpp @@ -3154,8 +3190,18 @@ [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/domain.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/domain.cpp.o -c /build/liggghts-3.8.0+repack1/src/domain.cpp [ 25%] Building CXX object src/CMakeFiles/libliggghts.dir/dump.cpp.o -[ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump.cpp +/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)': +/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:352:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&nstyles,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:361:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(&n,sizeof(int),1,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:364:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + if (me == 0) fread(keywords[m],sizeof(char),n,fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_atom_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp [ 26%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_custom.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_custom.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_custom.cpp @@ -3167,38 +3213,10 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_decomposition_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_decomposition_vtk.cpp [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_euler_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_euler_vtk.cpp -/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)': -/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:352:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&nstyles,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:361:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(&n,sizeof(int),1,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/dihedral_hybrid.cpp:364:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - if (me == 0) fread(keywords[m],sizeof(char),n,fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_image.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_image.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_image.cpp [ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_local.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_local.cpp -[ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o -[ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_local_gran.cpp -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_local_gran_vtk.cpp -[ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh.cpp -[ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh_stl.cpp -[ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh_vtk.cpp -[ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh_vtm.cpp -[ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_movie.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_movie.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_movie.cpp -[ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_particle.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_particle.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_particle.cpp -[ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_vtk.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_vtk.cpp /build/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp: In member function 'void LAMMPS_NS::DumpATOMVTK::setFileCurrent()': /build/liggghts-3.8.0+repack1/src/dump_atom_vtk.cpp:367:19: warning: 's' directive writing 1 byte into a region of size between 0 and 7 [-Wformat-overflow=] sprintf(pad,"%%s%%0%d_%%d%s%%s",padflag,&bif[1]); @@ -3223,6 +3241,24 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_local_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_local_gran.cpp +[ 28%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_local_gran_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_local_gran_vtk.cpp +[ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh.cpp +[ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_stl.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh_stl.cpp +[ 29%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh_vtk.cpp +[ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_mesh_vtm.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_mesh_vtm.cpp +[ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_movie.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_movie.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_movie.cpp +[ 30%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_particle.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_particle.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_particle.cpp +[ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_vtk.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_vtk.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_vtk.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/dump_xyz.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/dump_xyz.cpp.o -c /build/liggghts-3.8.0+repack1/src/dump_xyz.cpp [ 31%] Building CXX object src/CMakeFiles/libliggghts.dir/error.cpp.o @@ -3245,20 +3281,18 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_histo.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_spatial.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp -/build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()': -/build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp:520:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] - ftruncate(fileno(fp),fileend); - ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_ave_time.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_ave_time.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_aveforce.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_aveforce.cpp -/build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': -/build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp:848:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] +/build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()': +/build/liggghts-3.8.0+repack1/src/fix_ave_correlate.cpp:520:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_base_liggghts.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_base_liggghts.cpp +[ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_box_relax.cpp /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp: In member function 'virtual void LAMMPS_NS::FixAveSpatial::end_of_step()': /build/liggghts-3.8.0+repack1/src/fix_ave_spatial.cpp:917:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(fp),fileend); @@ -3267,15 +3301,17 @@ /build/liggghts-3.8.0+repack1/src/fix_ave_time.cpp:670:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(fp),fileend); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 35%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_box_relax.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_box_relax.cpp +/build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()': +/build/liggghts-3.8.0+repack1/src/fix_ave_histo.cpp:848:16: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] + ftruncate(fileno(fp),fileend); + ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_buoyancy.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_buoyancy.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling.cpp [ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o -[ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection.cpp +[ 36%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_impl.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_impl.cpp [ 37%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_cfd_coupling_convection_species.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp @@ -3289,8 +3325,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_check_timestep_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp [ 38%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_history.cpp -[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_history_mesh.cpp /build/liggghts-3.8.0+repack1/src/fix_check_timestep_sph.cpp:63: warning: "BIG" redefined #define BIG 1000000. @@ -3304,18 +3338,6 @@ /build/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition #define BIG 1.0e20 -[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom.cpp -[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom_wall.cpp -[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_continuum_weighted.cpp -[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_deform.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_deform.cpp -[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_deform_check.cpp -[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_diam_max.cpp /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp: In constructor 'LAMMPS_NS::FixCfdCouplingConvectionSpecies::FixCfdCouplingConvectionSpecies(LAMMPS_NS::LAMMPS*, int, char**)': /build/liggghts-3.8.0+repack1/src/fix_cfd_coupling_convection_species.cpp:75:37: warning: 'Source' directive writing 6 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf(sourceName_, "%sSource",speciesName_); @@ -3455,6 +3477,20 @@ ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_history_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_history_mesh.cpp +[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom.cpp +[ 39%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_contact_property_atom_wall.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_contact_property_atom_wall.cpp +[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_continuum_weighted.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_continuum_weighted.cpp +[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_deform.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_deform.cpp +[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_deform_check.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_deform_check.cpp +[ 40%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_diam_max.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_diam_max.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_drag.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_drag.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_drag.cpp [ 41%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_dt_reset.cpp.o @@ -3475,10 +3511,10 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_heat_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_heat_gran.cpp [ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_heat_gran_conduction.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_heat_gran_conduction.cpp -[ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_insert.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_insert.cpp [ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_insert_pack.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_insert_pack.cpp +[ 44%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_insert.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_insert.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_insert_rate_region.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_insert_rate_region.cpp [ 45%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_insert_stream.cpp.o @@ -3561,10 +3597,10 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_rigid.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_rigid.cpp [ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_scalar_transport_equation.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_scalar_transport_equation.cpp -[ 57%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_setforce.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_setforce.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_setforce.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_sph.cpp +[ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_setforce.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_setforce.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_setforce.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_continuity.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/fix_sph_density_continuity.cpp.o -c /build/liggghts-3.8.0+repack1/src/fix_sph_density_continuity.cpp [ 58%] Building CXX object src/CMakeFiles/libliggghts.dir/fix_sph_density_corr.cpp.o @@ -3617,10 +3653,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/group.cpp.o -c /build/liggghts-3.8.0+repack1/src/group.cpp [ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/image.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/image.cpp.o -c /build/liggghts-3.8.0+repack1/src/image.cpp -[ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/improper.cpp.o -c /build/liggghts-3.8.0+repack1/src/improper.cpp -[ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp /build/liggghts-3.8.0+repack1/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/group.cpp:569:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&ngroup,sizeof(int),1,fp); @@ -3631,24 +3663,16 @@ /build/liggghts-3.8.0+repack1/src/group.cpp:585:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(names[i],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/improper.cpp.o -c /build/liggghts-3.8.0+repack1/src/improper.cpp +[ 66%] Building CXX object src/CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/improper_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/info.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/info.cpp.o -c /build/liggghts-3.8.0+repack1/src/info.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/input.cpp.o -c /build/liggghts-3.8.0+repack1/src/input.cpp [ 67%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/input_mesh_tet.cpp.o -c /build/liggghts-3.8.0+repack1/src/input_mesh_tet.cpp -[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o -c /build/liggghts-3.8.0+repack1/src/input_mesh_tri.cpp -[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_multisphere.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/input_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/input_multisphere.cpp -[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/integrate.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/integrate.cpp.o -c /build/liggghts-3.8.0+repack1/src/integrate.cpp -[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/irregular.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/irregular.cpp.o -c /build/liggghts-3.8.0+repack1/src/irregular.cpp -[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/kspace.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/kspace.cpp.o -c /build/liggghts-3.8.0+repack1/src/kspace.cpp -[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lammps.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/lammps.cpp.o -c /build/liggghts-3.8.0+repack1/src/lammps.cpp /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:340:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3659,10 +3683,8 @@ /build/liggghts-3.8.0+repack1/src/improper_hybrid.cpp:352:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lattice.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/lattice.cpp.o -c /build/liggghts-3.8.0+repack1/src/lattice.cpp -[ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/library.cpp.o -c /build/liggghts-3.8.0+repack1/src/library.cpp +[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/input_mesh_tri.cpp.o -c /build/liggghts-3.8.0+repack1/src/input_mesh_tri.cpp /build/liggghts-3.8.0+repack1/src/input.cpp: In member function 'void LAMMPS_NS::Input::shell()': /build/liggghts-3.8.0+repack1/src/input.cpp:1124:10: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir(arg[1]); @@ -3670,6 +3692,20 @@ /build/liggghts-3.8.0+repack1/src/input.cpp:1170:24: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) system(work); ~~~~~~^~~~~~ +[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/input_multisphere.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/input_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/input_multisphere.cpp +[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/integrate.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/integrate.cpp.o -c /build/liggghts-3.8.0+repack1/src/integrate.cpp +[ 68%] Building CXX object src/CMakeFiles/libliggghts.dir/irregular.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/irregular.cpp.o -c /build/liggghts-3.8.0+repack1/src/irregular.cpp +[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/kspace.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/kspace.cpp.o -c /build/liggghts-3.8.0+repack1/src/kspace.cpp +[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lammps.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/lammps.cpp.o -c /build/liggghts-3.8.0+repack1/src/lammps.cpp +[ 69%] Building CXX object src/CMakeFiles/libliggghts.dir/lattice.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/lattice.cpp.o -c /build/liggghts-3.8.0+repack1/src/lattice.cpp +[ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/library.cpp.o -c /build/liggghts-3.8.0+repack1/src/library.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/library_cfd_coupling.cpp.o -c /build/liggghts-3.8.0+repack1/src/library_cfd_coupling.cpp [ 70%] Building CXX object src/CMakeFiles/libliggghts.dir/math_extra.cpp.o @@ -3688,6 +3724,8 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_stress.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_module_stress.cpp [ 72%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_module_stress_servo.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp +[ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_linear.cpp /build/liggghts-3.8.0+repack1/src/mesh_module_stress_servo.cpp:67: warning: "BIG" redefined #define BIG 1000000. @@ -3702,8 +3740,6 @@ /build/liggghts-3.8.0+repack1/src/domain_definitions.h:60: note: this is the location of the previous definition #define BIG 1.0e20 -[ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_linear.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_linear.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/mesh_mover_rotation.cpp.o -c /build/liggghts-3.8.0+repack1/src/mesh_mover_rotation.cpp [ 73%] Building CXX object src/CMakeFiles/libliggghts.dir/min.cpp.o @@ -3712,6 +3748,15 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/min_cg.cpp.o -c /build/liggghts-3.8.0+repack1/src/min_cg.cpp [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/min_linesearch.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/min_linesearch.cpp.o -c /build/liggghts-3.8.0+repack1/src/min_linesearch.cpp +In file included from /build/liggghts-3.8.0+repack1/src/pair_gran_base.h:63, + from /build/liggghts-3.8.0+repack1/src/granular_styles.h:81, + from /build/liggghts-3.8.0+repack1/src/lammps.cpp:87: +/build/liggghts-3.8.0+repack1/src/os_specific.h: In function 'T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::SurfacesIntersectData]': +/build/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of 'int posix_memalign(void**, size_t, size_t)', declared with attribute warn_unused_result [-Wunused-result] + posix_memalign(&ptr, alignment, sizeof(T)); + ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/os_specific.h: In function 'T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::ForceData]': +/build/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of 'int posix_memalign(void**, size_t, size_t)', declared with attribute warn_unused_result [-Wunused-result] [ 74%] Building CXX object src/CMakeFiles/libliggghts.dir/minimize.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/minimize.cpp.o -c /build/liggghts-3.8.0+repack1/src/minimize.cpp [ 75%] Building CXX object src/CMakeFiles/libliggghts.dir/modified_andrew.cpp.o @@ -3728,27 +3773,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_bond.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_bond.cpp [ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_derive.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_derive.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_derive.cpp -[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_dummy.cpp -In file included from /build/liggghts-3.8.0+repack1/src/pair_gran_base.h:63, - from /build/liggghts-3.8.0+repack1/src/granular_styles.h:81, - from /build/liggghts-3.8.0+repack1/src/lammps.cpp:87: -/build/liggghts-3.8.0+repack1/src/os_specific.h: In function 'T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::SurfacesIntersectData]': -/build/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of 'int posix_memalign(void**, size_t, size_t)', declared with attribute warn_unused_result [-Wunused-result] - posix_memalign(&ptr, alignment, sizeof(T)); - ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/os_specific.h: In function 'T* aligned_malloc(size_t) [with T = LIGGGHTS::ContactModels::ForceData]': -/build/liggghts-3.8.0+repack1/src/os_specific.h:80:17: warning: ignoring return value of 'int posix_memalign(void**, size_t, size_t)', declared with attribute warn_unused_result [-Wunused-result] -[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_full.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_full.cpp -[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_gran.cpp -[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_bin.cpp -[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_multi.cpp -[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_nsq.cpp /build/liggghts-3.8.0+repack1/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)': /build/liggghts-3.8.0+repack1/src/modify.cpp:1197:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp); @@ -3789,6 +3813,18 @@ /build/liggghts-3.8.0+repack1/src/modify.cpp:1264:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&n,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ +[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_dummy.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_dummy.cpp +[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_full.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_full.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_full.cpp +[ 77%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_gran.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_gran.cpp +[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_bin.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_bin.cpp +[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_multi.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_multi.cpp +[ 78%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_half_nsq.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_half_nsq.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_list.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/neigh_list.cpp.o -c /build/liggghts-3.8.0+repack1/src/neigh_list.cpp [ 79%] Building CXX object src/CMakeFiles/libliggghts.dir/neigh_request.cpp.o @@ -3807,30 +3843,16 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_gran.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_gran.cpp [ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_gran_proxy.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp -[ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp -[ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid_overlay.cpp -[ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_line_lj.cpp -[ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_soft.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_soft.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_soft.cpp -[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_sph.cpp -[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp -[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert.cpp -[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsertSuperquadric.cpp -[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert_multisphere.cpp /build/liggghts-3.8.0+repack1/src/pair_gran.cpp: In member function 'virtual void LAMMPS_NS::PairGran::read_restart(FILE*, int, int)': /build/liggghts-3.8.0+repack1/src/pair_gran.cpp:763:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/procmap.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/procmap.cpp.o -c /build/liggghts-3.8.0+repack1/src/procmap.cpp +[ 81%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp +/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp: In member function 'virtual void LAMMPS_NS::PairGranProxy::read_restart_settings(FILE*, int, int)': +/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:116:26: warning: format '%zd' expects argument of type 'signed size_t', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] + fprintf(screen," original hashcode = %zd \n",selected); + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*, int, int)': /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:660:21: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&nstyles,sizeof(int),1,fp); @@ -3841,6 +3863,19 @@ /build/liggghts-3.8.0+repack1/src/pair_hybrid.cpp:677:23: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(keywords[m],sizeof(char),n,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:99:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] + fread(&selected, sizeof(int64_t), 1, fp); + ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_hybrid_overlay.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_hybrid_overlay.cpp +[ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_line_lj.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_line_lj.cpp +[ 82%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_soft.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_soft.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_soft.cpp +[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_sph.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_sph.cpp +[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/pair_sph_artvisc_tenscorr.cpp.o -c /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp /build/liggghts-3.8.0+repack1/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*, int, int)': /build/liggghts-3.8.0+repack1/src/pair_soft.cpp:282:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -3858,6 +3893,8 @@ /build/liggghts-3.8.0+repack1/src/pair_soft.cpp:313:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&mix_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 83%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert.cpp /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp: In member function 'virtual void LAMMPS_NS::PairSphArtviscTenscorr::read_restart(FILE*, int, int)': /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:300:25: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp); @@ -3869,15 +3906,14 @@ /build/liggghts-3.8.0+repack1/src/pair_sph_artvisc_tenscorr.cpp:323:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&tensCorr_flag,sizeof(int),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp: In member function 'virtual void LAMMPS_NS::PairGranProxy::read_restart_settings(FILE*, int, int)': -/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:116:26: warning: format '%zd' expects argument of type 'signed size_t', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=] - fprintf(screen," original hashcode = %zd \n",selected); - ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ +[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsertSuperquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsertSuperquadric.cpp +[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/particleToInsert_multisphere.cpp.o -c /build/liggghts-3.8.0+repack1/src/particleToInsert_multisphere.cpp +[ 84%] Building CXX object src/CMakeFiles/libliggghts.dir/procmap.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/procmap.cpp.o -c /build/liggghts-3.8.0+repack1/src/procmap.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/properties.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/properties.cpp.o -c /build/liggghts-3.8.0+repack1/src/properties.cpp -/build/liggghts-3.8.0+repack1/src/pair_gran_proxy.cpp:99:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] - fread(&selected, sizeof(int64_t), 1, fp); - ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/property_registry.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/property_registry.cpp.o -c /build/liggghts-3.8.0+repack1/src/property_registry.cpp [ 85%] Building CXX object src/CMakeFiles/libliggghts.dir/random.cpp.o @@ -3894,14 +3930,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/read_restart.cpp.o -c /build/liggghts-3.8.0+repack1/src/read_restart.cpp [ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/reader.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader.cpp -[ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_native.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader_native.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader_native.cpp -[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader_xyz.cpp -[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region.cpp.o -c /build/liggghts-3.8.0+repack1/src/region.cpp -[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region_block.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region_block.cpp.o -c /build/liggghts-3.8.0+repack1/src/region_block.cpp /build/liggghts-3.8.0+repack1/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::nread_int(int*, int, FILE*)': /build/liggghts-3.8.0+repack1/src/read_restart.cpp:863:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buf,sizeof(int),n,fp); @@ -3933,6 +3961,14 @@ /build/liggghts-3.8.0+repack1/src/read_restart.cpp:948:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&value,sizeof(bigint),1,fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 87%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_native.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader_native.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader_native.cpp +[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/reader_xyz.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/reader_xyz.cpp.o -c /build/liggghts-3.8.0+repack1/src/reader_xyz.cpp +[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region.cpp.o -c /build/liggghts-3.8.0+repack1/src/region.cpp +[ 88%] Building CXX object src/CMakeFiles/libliggghts.dir/region_block.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region_block.cpp.o -c /build/liggghts-3.8.0+repack1/src/region_block.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cone.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/region_cone.cpp.o -c /build/liggghts-3.8.0+repack1/src/region_cone.cpp [ 89%] Building CXX object src/CMakeFiles/libliggghts.dir/region_cylinder.cpp.o @@ -3969,14 +4005,6 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/signal_handling.cpp.o -c /build/liggghts-3.8.0+repack1/src/signal_handling.cpp [ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/sort_buffer.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/sort_buffer.cpp.o -c /build/liggghts-3.8.0+repack1/src/sort_buffer.cpp -[ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/special.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/special.cpp.o -c /build/liggghts-3.8.0+repack1/src/special.cpp -[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/superquadric.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/superquadric.cpp -[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/tet_mesh.cpp -[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/thermo.cpp.o -cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/thermo.cpp.o -c /build/liggghts-3.8.0+repack1/src/thermo.cpp /build/liggghts-3.8.0+repack1/src/signal_handling.cpp: In function 'void LAMMPS_NS::SignalHandler::int_handler(int)': /build/liggghts-3.8.0+repack1/src/signal_handling.cpp:65:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(STDOUT_FILENO, warning.c_str(), len); @@ -3991,6 +4019,14 @@ /build/liggghts-3.8.0+repack1/src/signal_handling.cpp:108:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(STDOUT_FILENO, warning.c_str(), len); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 94%] Building CXX object src/CMakeFiles/libliggghts.dir/special.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/special.cpp.o -c /build/liggghts-3.8.0+repack1/src/special.cpp +[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/superquadric.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/superquadric.cpp.o -c /build/liggghts-3.8.0+repack1/src/superquadric.cpp +[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/tet_mesh.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/tet_mesh.cpp.o -c /build/liggghts-3.8.0+repack1/src/tet_mesh.cpp +[ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/thermo.cpp.o +cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/thermo.cpp.o -c /build/liggghts-3.8.0+repack1/src/thermo.cpp [ 95%] Building CXX object src/CMakeFiles/libliggghts.dir/timer.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/timer.cpp.o -c /build/liggghts-3.8.0+repack1/src/timer.cpp [ 96%] Building CXX object src/CMakeFiles/libliggghts.dir/tri_mesh.cpp.o @@ -4007,16 +4043,16 @@ cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/velocity.cpp.o -c /build/liggghts-3.8.0+repack1/src/velocity.cpp [ 98%] Building CXX object src/CMakeFiles/libliggghts.dir/verlet.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/verlet.cpp.o -c /build/liggghts-3.8.0+repack1/src/verlet.cpp +/build/liggghts-3.8.0+repack1/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)': +/build/liggghts-3.8.0+repack1/src/variable.cpp:534:13: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] + fscanf(fp,"%d",&nextindex); + ~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object src/CMakeFiles/libliggghts.dir/write_data.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/write_data.cpp.o -c /build/liggghts-3.8.0+repack1/src/write_data.cpp [ 98%] Building CXX object src/CMakeFiles/libliggghts.dir/write_dump.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o CMakeFiles/libliggghts.dir/write_dump.cpp.o -c /build/liggghts-3.8.0+repack1/src/write_dump.cpp [ 99%] Building CXX object src/CMakeFiles/libliggghts.dir/write_restart.cpp.o cd /build/liggghts-3.8.0+repack1/debian/build/src && /usr/bin/mpicxx -Dlibliggghts_EXPORTS -DvtkIOGeometry_AUTOINIT="1(vtkIOMPIParallel)" -DvtkIOParallel_AUTOINIT="1(vtkIOMPIParallel)" -DvtkRenderingCore_AUTOINIT="3(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingOpenGL)" -I/usr/include/vtk-6.3 -I/usr/include/freetype2 -I/usr/include/i386-linux-gnu -I/usr/include/hdf5/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -I/usr/include/jsoncpp -I/usr/include/eigen3 -I/build/liggghts-3.8.0+repack1 -I/build/liggghts-3.8.0+repack1/src -g -O2 -ffile-prefix-map=/build/liggghts-3.8.0+repack1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DLAMMPS_VTK6 -DLAMMPS_VTK -std=c++0x -DLAMMPS_JPEG -fPIC -o 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/usr/lib/i386-linux-gnu/libvtkRenderingCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonColor-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersExtraction-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersStatistics-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingFourier-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkImagingCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkalglib-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersGeometry-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersModeling-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersSources-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersGeneral-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkFiltersCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonComputationalGeometry-6.3.so.6.3.0 -lnetcdf_c++ -lnetcdf /usr/lib/i386-linux-gnu/libvtkParallelCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOLegacy-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkIOCore-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonExecutionModel-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonDataModel-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonMisc-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonSystem-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtksys-6.3.so.6.3.0 -ldl /usr/lib/i386-linux-gnu/libvtkCommonTransforms-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonMath-6.3.so.6.3.0 /usr/lib/i386-linux-gnu/libvtkCommonCore-6.3.so.6.3.0 @@ -4046,11 +4082,11 @@ cp -r examples/LIGGGHTS/Tutorials_public/heatTransfer_1/* test/ cd test; mpirun -np 2 --allow-run-as-root --oversubscribe /build/liggghts-3.8.0+repack1/debian/build/src/liggghts < in.heatGran -------------------------------------------------------------------------- -[[7410,1],1]: A high-performance Open MPI point-to-point messaging module +[[49232,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) - Host: profitbricks-build6-i386 + Host: i-capture-the-hostname Another transport will be used instead, although this may result in lower performance. @@ -4058,14 +4094,14 @@ NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- -LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2021-08-17-14:21:30 by pbuilder1, git commit unknown) +LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2020-07-16-10:18:11 by pbuilder2, git commit unknown) Created orthogonal box = (-0.05 -0.05 0) to (0.05 0.05 0.15) 1 by 1 by 2 MPI processor grid Fix particledistribution/discrete (id pdd1): distribution based on mass%: pts1: d=8.000000e-03 (max. bounding sphere) mass%=100.000000% Fix particledistribution/discrete (id pdd1): distribution based on number%: pts1: d=8.000000e-03 (max. bounding sphere) number%=100.000000% -Setting up run at Tue Aug 17 14:24:13 2021 +Setting up run at Thu Jul 16 10:28:07 2020 INFO: Resetting random generator for region bc INFO: Particle insertion ins: inserting every 0 steps @@ -4074,37 +4110,37 @@ 0 0 0 0 0 0.0015 insertion: proc 1 at 0 % insertion: proc 1 at 10 % +insertion: proc 1 at 20 % +insertion: proc 1 at 30 % +insertion: proc 1 at 40 % +insertion: proc 1 at 50 % +insertion: proc 1 at 60 % insertion: proc 0 at 0 % insertion: proc 0 at 10 % insertion: proc 0 at 20 % -insertion: proc 1 at 20 % insertion: proc 0 at 30 % -insertion: proc 1 at 30 % insertion: proc 0 at 40 % -insertion: proc 1 at 40 % insertion: proc 0 at 50 % insertion: proc 0 at 60 % -insertion: proc 1 at 50 % -insertion: proc 0 at 70 % -insertion: proc 1 at 60 % insertion: proc 1 at 70 % -insertion: proc 0 at 80 % insertion: proc 1 at 80 % -insertion: proc 0 at 90 % insertion: proc 1 at 90 % -insertion: proc 0 at 100 % +insertion: proc 0 at 70 % +insertion: proc 0 at 80 % +insertion: proc 0 at 90 % insertion: proc 1 at 100 % +insertion: proc 0 at 100 % INFO: Particle insertion ins: inserted 889 particle templates (mass 1.906603e+00) at step 1 - a total of 889 particle templates (mass 1.906603e+00) inserted so far. 1 889 0.0858673 0 5719.8098 0.0015 -Loop time of 0.0153232 on 2 procs for 1 steps with 889 atoms, finish time Tue Aug 17 14:24:13 2021 +Loop time of 0.026716 on 2 procs for 1 steps with 889 atoms, finish time Thu Jul 16 10:28:07 2020 -Pair time (%) = 1.91635e-05 (0.125062) -Neigh time (%) = 0.000421913 (2.75342) -Comm time (%) = 0.000367701 (2.39963) -Outpt time (%) = 2.65465e-05 (0.173244) -Other time (%) = 0.0144879 (94.5486) +Pair time (%) = 3.569e-05 (0.13359) +Neigh time (%) = 0.000576625 (2.15835) +Comm time (%) = 0.000252022 (0.943336) +Outpt time (%) = 4.73895e-05 (0.177382) +Other time (%) = 0.0258043 (96.5873) Nlocal: 444.5 ave 446 max 443 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -4117,7 +4153,7 @@ Ave neighs/atom = 1.52418 Neighbor list builds = 1 Dangerous builds = 0 -Setting up run at Tue Aug 17 14:24:13 2021 +Setting up run at Thu Jul 16 10:28:07 2020 Memory usage per processor = 7.99957 Mbytes Step Atoms KinEng rke heattran Volume @@ -4125,6 +4161,8 @@ 1000 889 0.24513315 0.00028749395 5719.8098 0.0015 2000 889 0.41448052 0.0011292267 5719.8098 0.0015 3000 889 0.499185 0.0020564748 5719.8098 0.0015 +[i-capture-the-hostname:19713] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics +[i-capture-the-hostname:19713] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 4000 889 0.31640464 0.0039072055 5719.8098 0.0015 5000 889 0.025728568 0.0031537134 5719.8098 0.0015 6000 889 0.0066287745 0.0017750201 5719.8098 0.0015 @@ -4132,8 +4170,6 @@ 8000 889 0.0035005057 0.00068869832 5719.8098 0.0015 9000 889 0.0018745735 0.00041781236 5719.8098 0.0015 10000 889 0.0011201936 0.00026314438 5719.8098 0.0015 -[profitbricks-build6-i386:23957] 1 more process has sent help message help-mpi-btl-base.txt / btl:no-nics -[profitbricks-build6-i386:23957] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages 11000 889 0.00027955703 0.00014277644 5719.8098 0.0015 12000 889 0.00020839365 8.2854619e-05 5719.8098 0.0015 13000 889 0.00010373299 4.1740613e-05 5719.8098 0.0015 @@ -4144,14 +4180,14 @@ 18000 889 2.0608503e-05 8.4041706e-06 5719.8098 0.0015 19000 889 7.1847902e-06 5.7384807e-06 5719.8098 0.0015 20000 889 2.5428841e-06 2.021589e-06 5719.8098 0.0015 -Loop time of 11.6245 on 2 procs for 19999 steps with 889 atoms, finish time Tue Aug 17 14:24:25 2021 +Loop time of 38.0859 on 2 procs for 19999 steps with 889 atoms, finish time Thu Jul 16 10:28:45 2020 -Pair time (%) = 3.69633 (31.7976) -Neigh time (%) = 0.0790866 (0.680341) -Comm time (%) = 1.06758 (9.18381) -Outpt time (%) = 0.131929 (1.13492) -Other time (%) = 6.64963 (57.2033) +Pair time (%) = 10.4245 (27.3711) +Neigh time (%) = 0.139659 (0.366695) +Comm time (%) = 3.28511 (8.62553) +Outpt time (%) = 2.56931 (6.7461) +Other time (%) = 21.6673 (56.8906) Nlocal: 444.5 ave 889 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -4166,7 +4202,7 @@ Dangerous builds = 0 Setting atom values ... 442 settings made for property/atom -Setting up run at Tue Aug 17 14:24:25 2021 +Setting up run at Thu Jul 16 10:28:45 2020 Memory usage per processor = 8.29655 Mbytes Step Atoms KinEng rke heattran Volume @@ -4201,14 +4237,14 @@ 48000 889 3.9966529e-09 1.8327843e-08 10459.51 0.0015 49000 889 3.9981496e-09 1.8327955e-08 10459.51 0.0015 50000 889 2.0362479e-09 1.7303876e-08 10459.51 0.0015 -Loop time of 20.6136 on 2 procs for 30000 steps with 889 atoms, finish time Tue Aug 17 14:24:45 2021 +Loop time of 56.0394 on 2 procs for 30000 steps with 889 atoms, finish time Thu Jul 16 10:29:41 2020 -Pair time (%) = 6.70816 (32.5425) -Neigh time (%) = 0.000521586 (0.00253031) -Comm time (%) = 0.0203037 (0.0984967) -Outpt time (%) = 0.212834 (1.03249) -Other time (%) = 13.6717 (66.324) +Pair time (%) = 14.6945 (26.2217) +Neigh time (%) = 0.000710187 (0.0012673) +Comm time (%) = 0.101842 (0.181732) +Outpt time (%) = 5.14607 (9.18295) +Other time (%) = 36.0963 (64.4124) Nlocal: 444.5 ave 889 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -4226,11 +4262,11 @@ cp -r examples/LIGGGHTS/Tutorials_public/heatTransfer_1/* test/ cd test; /build/liggghts-3.8.0+repack1/debian/build/src/liggghts < in.heatGran -------------------------------------------------------------------------- -[[7360,1],0]: A high-performance Open MPI point-to-point messaging module +[[56208,1],0]: A high-performance Open MPI point-to-point messaging module was unable to find any relevant network interfaces: Module: OpenFabrics (openib) - Host: profitbricks-build6-i386 + Host: i-capture-the-hostname Another transport will be used instead, although this may result in lower performance. @@ -4238,14 +4274,14 @@ NOTE: You can disable this warning by setting the MCA parameter btl_base_warn_component_unused to 0. -------------------------------------------------------------------------- -LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2021-08-17-14:21:30 by pbuilder1, git commit unknown) +LIGGGHTS (Version LIGGGHTS-PUBLIC 3.8.0, compiled 2020-07-16-10:18:11 by pbuilder2, git commit unknown) Created orthogonal box = (-0.05 -0.05 0) to (0.05 0.05 0.15) 1 by 1 by 1 MPI processor grid Fix particledistribution/discrete (id pdd1): distribution based on mass%: pts1: d=8.000000e-03 (max. bounding sphere) mass%=100.000000% Fix particledistribution/discrete (id pdd1): distribution based on number%: pts1: d=8.000000e-03 (max. bounding sphere) number%=100.000000% -Setting up run at Tue Aug 17 14:24:46 2021 +Setting up run at Thu Jul 16 10:29:45 2020 INFO: Resetting random generator for region bc INFO: Particle insertion ins: inserting every 0 steps @@ -4265,14 +4301,14 @@ INFO: Particle insertion ins: inserted 890 particle templates (mass 1.908748e+00) at step 1 - a total of 890 particle templates (mass 1.908748e+00) inserted so far. 1 890 0.085963889 0 5726.2438 0.0015 -Loop time of 0.0192034 on 1 procs for 1 steps with 890 atoms, finish time Tue Aug 17 14:24:46 2021 +Loop time of 0.0390665 on 1 procs for 1 steps with 890 atoms, finish time Thu Jul 16 10:29:45 2020 -Pair time (%) = 5.9307e-05 (0.308837) -Neigh time (%) = 0.000750903 (3.91027) -Comm time (%) = 9.051e-06 (0.0471324) -Outpt time (%) = 3.706e-05 (0.192987) -Other time (%) = 0.018347 (95.5408) +Pair time (%) = 7.5444e-05 (0.193117) +Neigh time (%) = 0.00115587 (2.95872) +Comm time (%) = 1.9311e-05 (0.0494311) +Outpt time (%) = 6.8801e-05 (0.176112) +Other time (%) = 0.0377471 (96.6226) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -4285,7 +4321,7 @@ Ave neighs/atom = 1.54719 Neighbor list builds = 1 Dangerous builds = 0 -Setting up run at Tue Aug 17 14:24:46 2021 +Setting up run at Thu Jul 16 10:29:45 2020 Memory usage per processor = 8.0355 Mbytes Step Atoms KinEng rke heattran Volume @@ -4310,14 +4346,14 @@ 18000 890 1.115964e-05 5.0891708e-06 5726.2438 0.0015 19000 890 8.6317273e-06 5.1602134e-06 5726.2438 0.0015 20000 890 3.5313037e-06 2.2976158e-06 5726.2438 0.0015 -Loop time of 11.322 on 1 procs for 19999 steps with 890 atoms, finish time Tue Aug 17 14:24:57 2021 +Loop time of 29.4139 on 1 procs for 19999 steps with 890 atoms, finish time Thu Jul 16 10:30:15 2020 -Pair time (%) = 7.11905 (62.8778) -Neigh time (%) = 0.146094 (1.29035) -Comm time (%) = 0.0132772 (0.117268) -Outpt time (%) = 0.199693 (1.76375) -Other time (%) = 3.84393 (33.9508) +Pair time (%) = 16.3596 (55.6188) +Neigh time (%) = 0.216931 (0.737511) +Comm time (%) = 0.070083 (0.238265) +Outpt time (%) = 3.94805 (13.4224) +Other time (%) = 8.81917 (29.983) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -4332,7 +4368,7 @@ Dangerous builds = 0 Setting atom values ... 445 settings made for property/atom -Setting up run at Tue Aug 17 14:24:57 2021 +Setting up run at Thu Jul 16 10:30:15 2020 Memory usage per processor = 8.32421 Mbytes Step Atoms KinEng rke heattran Volume @@ -4367,14 +4403,14 @@ 48000 890 9.2079131e-09 2.6866978e-08 10498.114 0.0015 49000 890 5.774488e-09 2.5126969e-08 10498.114 0.0015 50000 890 5.8549287e-09 2.0714114e-08 10498.114 0.0015 -Loop time of 20.0822 on 1 procs for 30000 steps with 890 atoms, finish time Tue Aug 17 14:25:17 2021 +Loop time of 57.2931 on 1 procs for 30000 steps with 890 atoms, finish time Thu Jul 16 10:31:12 2020 -Pair time (%) = 12.9517 (64.4935) -Neigh time (%) = 0.00299238 (0.0149006) -Comm time (%) = 0.0138363 (0.0688982) -Outpt time (%) = 0.304833 (1.51792) -Other time (%) = 6.80884 (33.9048) +Pair time (%) = 30.6074 (53.4225) +Neigh time (%) = 0.00377361 (0.0065865) +Comm time (%) = 0.0964592 (0.168361) +Outpt time (%) = 10.3236 (18.0188) +Other time (%) = 16.2619 (28.3837) Nlocal: 890 ave 890 max 890 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -4395,7 +4431,7 @@ dh_testroot -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_prep -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_auto_install -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build - cd debian/build && make -j18 install DESTDIR=/build/liggghts-3.8.0\+repack1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd debian/build && make -j10 install DESTDIR=/build/liggghts-3.8.0\+repack1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/liggghts-3.8.0+repack1/debian/build' /usr/bin/cmake -S/build/liggghts-3.8.0+repack1 -B/build/liggghts-3.8.0+repack1/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles /build/liggghts-3.8.0+repack1/debian/build/CMakeFiles/progress.marks @@ -4927,23 +4963,24 @@ dh_md5sums -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dh_builddeb -O--buildsystem=cmake -O--builddirectory=/build/liggghts-3.8.0\+repack1/debian/build dpkg-deb: building package 'libliggghts3' in '../libliggghts3_3.8.0+repack1-4_i386.deb'. +dpkg-deb: building package 'liggghts-dbgsym' in '../liggghts-dbgsym_3.8.0+repack1-4_i386.deb'. dpkg-deb: building package 'libliggghts-dev' in '../libliggghts-dev_3.8.0+repack1-4_i386.deb'. +dpkg-deb: building package 'liggghts-doc' in '../liggghts-doc_3.8.0+repack1-4_all.deb'. dpkg-deb: building package 'libliggghts3-dbgsym' in '../libliggghts3-dbgsym_3.8.0+repack1-4_i386.deb'. dpkg-deb: building package 'liggghts' in '../liggghts_3.8.0+repack1-4_i386.deb'. -dpkg-deb: building package 'liggghts-dbgsym' in '../liggghts-dbgsym_3.8.0+repack1-4_i386.deb'. -dpkg-deb: building package 'liggghts-doc' in '../liggghts-doc_3.8.0+repack1-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../liggghts_3.8.0+repack1-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -I: copying local configuration +I: user script /srv/workspace/pbuilder/17450/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/17450/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/56847 and its subdirectories -I: Current time: Tue Aug 17 14:25:52 -12 2021 -I: pbuilder-time-stamp: 1629253552 +I: removing directory /srv/workspace/pbuilder/17450 and its subdirectories +I: Current time: Thu Jul 16 10:34:18 +14 2020 +I: pbuilder-time-stamp: 1594845258