Diff of the two buildlogs: -- --- b1/build.log 2025-08-03 04:27:20.329069960 +0000 +++ b2/build.log 2025-08-03 04:34:14.545591678 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Aug 2 16:19:34 -12 2025 -I: pbuilder-time-stamp: 1754194774 +I: Current time: Sun Sep 6 00:50:21 +14 2026 +I: pbuilder-time-stamp: 1788605421 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying tao-pegtl-3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2696947/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 5 10:50 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='3f9ff907e7d748f39848f01a10b551bd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2696947' - PS1='# ' - PS2='> ' + INVOCATION_ID=61eac79bb0b64df088f41f2f8b9f0228 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3486490 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.veJhDgni/pbuilderrc_74i9 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.veJhDgni/b1 --logfile b1/build.log gemmi_0.7.1+ds-1~exp1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.veJhDgni/pbuilderrc_RFZd --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.veJhDgni/b2 --logfile b2/build.log gemmi_0.7.1+ds-1~exp1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2696947/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -245,7 +277,7 @@ Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-pybind11 all 2.13.6-2 [215 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-2 [250 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] -Fetched 59.8 MB in 8s (7111 kB/s) +Fetched 59.8 MB in 1s (48.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -615,8 +647,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Aug 3 04:23:19 UTC 2025. -Universal Time is now: Sun Aug 3 04:23:19 UTC 2025. +Local time is now: Sat Sep 5 10:51:30 UTC 2026. +Universal Time is now: Sat Sep 5 10:51:30 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -722,7 +754,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gemmi-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gemmi_0.7.1+ds-1~exp1_source.changes +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gemmi-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gemmi_0.7.1+ds-1~exp1_source.changes dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.7.1+ds-1~exp1 dpkg-buildpackage: info: source distribution experimental @@ -761,8 +797,8 @@ -- The python module will be built. -- Found Python: /usr/bin/python3 (found version "3.13.5") found components: Interpreter Development.Module -- Found nanobind 2.5.0: /usr/share/nanobind --- Configuring done (5.2s) --- Generating done (0.1s) +-- Configuring done (6.4s) +-- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: @@ -774,7 +810,7 @@ -- Build files have been written to: /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.7.1+ds -B/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -784,105 +820,107 @@ make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/depend make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/nanobind-static.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/nanobind-static.dir/build.make CMakeFiles/nanobind-static.dir/build +make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/build -make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build -make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -[ 3%] Building CXX object CMakeFiles/options.dir/prog/options.cpp.o -[ 3%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -[ 5%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o -[ 5%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o +[ 1%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o /usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_internals.cpp.o -c /usr/share/nanobind/src/nb_internals.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/options.dir/prog/options.cpp.o -MF CMakeFiles/options.dir/prog/options.cpp.o.d -o CMakeFiles/options.dir/prog/options.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/options.cpp -[ 7%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o -[ 9%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -[ 11%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o -[ 11%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o -[ 13%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -[ 16%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o -[ 16%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/json.cpp.o -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp -[ 9%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -[ 9%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o -[ 9%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -[ 9%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -[ 9%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o -c /usr/share/nanobind/src/nb_ft.cpp -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp +[ 3%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o +[ 3%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o +[ 3%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/eig3.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/assembly.cpp -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/calculate.cpp +[ 5%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/ccp4.cpp -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp +[ 7%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o +[ 9%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_type.cpp.o -c /usr/share/nanobind/src/nb_type.cpp +[ 11%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o +[ 11%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o +[ 11%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o +[ 11%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o +[ 11%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o +[ 13%] Building CXX object CMakeFiles/options.dir/prog/options.cpp.o +[ 13%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/align.cpp.o +[ 15%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o +[ 15%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o /usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_static_property.cpp.o -c /usr/share/nanobind/src/nb_static_property.cpp +[ 18%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o +[ 11%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/align.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/align.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/align.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/align.cpp +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/options.dir/prog/options.cpp.o -MF CMakeFiles/options.dir/prog/options.cpp.o.d -o CMakeFiles/options.dir/prog/options.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/options.cpp +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_func.cpp.o -c /usr/share/nanobind/src/nb_func.cpp +[ 20%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/crd.cpp +[ 22%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/json.cpp.o +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_enum.cpp.o -c /usr/share/nanobind/src/nb_enum.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/ddl.cpp +[ 22%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o /usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/common.cpp.o -c /usr/share/nanobind/src/common.cpp +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/fprime.cpp +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/gz.cpp +[ 28%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o +[ 30%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o +[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o +[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o +[ 28%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o +[ 28%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o +[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/intensit.cpp +[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/error.cpp.o -c /usr/share/nanobind/src/error.cpp +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp +[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o +[ 28%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/calculate.cpp +/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ft.cpp.o -c /usr/share/nanobind/src/nb_ft.cpp +[ 32%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/json.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/json.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/json.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/json.cpp -[ 22%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o -[ 22%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o -[ 22%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/align.cpp.o -[ 22%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o +[ 33%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/mmcif.cpp +[ 33%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/select.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/mmread_gz.cpp -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/align.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/align.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/align.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/align.cpp -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/trampoline.cpp.o -c /usr/share/nanobind/src/trampoline.cpp -[ 24%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -[ 28%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/fprime.cpp -[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o -[ 30%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o -[ 24%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o -[ 24%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -[ 24%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o -[ 24%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/crd.cpp -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/read_cif.cpp -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/nb_ndarray.cpp.o -c /usr/share/nanobind/src/nb_ndarray.cpp -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/sprintf.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/monlib.cpp -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/mmcif.cpp -[ 24%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o -[ 24%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o -[ 33%] Building CXX object CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -[ 35%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o -[ 35%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o -[ 35%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/eig3.cpp -/usr/bin/c++ -I/usr/include/python3.13 -I/usr/share/nanobind/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fno-strict-aliasing -MD -MT CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -MF CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o.d -o CMakeFiles/nanobind-static.dir/usr/share/nanobind/src/implicit.cpp.o -c /usr/share/nanobind/src/implicit.cpp -[ 35%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/gz.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/mtz.cpp -[ 37%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o -[ 37%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/select.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/mtz2cif.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/pdb.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/polyheur.cpp +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/read_cif.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/resinfo.cpp -[ 37%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o -[ 39%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o -[ 39%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/riding_h.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/select.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/select.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/select.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/select.cpp -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/symmetry.cpp +[ 35%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/to_json.cpp +[ 37%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o +[ 37%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/to_mmcif.cpp +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/symmetry.cpp +[ 39%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o +[ 37%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o +[ 41%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o +[ 41%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/sprintf.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/to_pdb.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/topo.cpp +/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/xds_ascii.cpp /build/reproducible-path/gemmi-0.7.1+ds/src/sprintf.cpp:30:86: note: '#pragma message: Using system stb_sprintf.h, not the bundled one. It may not work.' 30 | # pragma message("Using system stb_sprintf.h, not the bundled one. It may not work.") | ^ -[ 41%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -/usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/xds_ascii.cpp +make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +[ 41%] Built target options [ 41%] Linking CXX static library libnanobind-static.a /usr/bin/cmake -P CMakeFiles/nanobind-static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/nanobind-static.dir/link.txt --verbose=1 @@ -890,8 +928,6 @@ /usr/bin/ranlib libnanobind-static.a make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 41%] Built target nanobind-static -make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -[ 41%] Built target options [ 41%] Linking CXX static library libgemmi_cpp.a /usr/bin/cmake -P CMakeFiles/gemmi_cpp.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/gemmi_cpp.dir/link.txt --verbose=1 @@ -911,94 +947,94 @@ make -f CMakeFiles/gemmi_py.dir/build.make CMakeFiles/gemmi_py.dir/build make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -[ 45%] Building CXX object CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o -[ 45%] Building CXX object CMakeFiles/gemmi_py.dir/python/chemcomp.cpp.o -[ 45%] Building CXX object CMakeFiles/gemmi_py.dir/python/grid.cpp.o -[ 45%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o -[ 45%] Building CXX object CMakeFiles/gemmi_py.dir/python/align.cpp.o +[ 47%] Building CXX object CMakeFiles/gemmi_py.dir/python/cif.cpp.o +[ 47%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o +[ 47%] Building CXX object CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o +[ 49%] Building CXX object CMakeFiles/gemmi_py.dir/python/chemcomp.cpp.o +[ 47%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/align.cpp.o +[ 49%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/align.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/align.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/align.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/align.cpp +[ 50%] Building CXX object CMakeFiles/gemmi_py.dir/python/elem.cpp.o +[ 50%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o +[ 50%] Building CXX object CMakeFiles/gemmi_py.dir/python/align.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/blobs.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o -MF CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/ccp4.cpp -[ 47%] Building CXX object CMakeFiles/gemmi_py.dir/python/custom.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/chemcomp.cpp.o -MF CMakeFiles/gemmi_py.dir/python/chemcomp.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/chemcomp.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/chemcomp.cpp -[ 50%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o -[ 50%] Building CXX object CMakeFiles/gemmi_py.dir/python/gemmi.cpp.o -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/grid.cpp.o -MF CMakeFiles/gemmi_py.dir/python/grid.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/grid.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/grid.cpp -[ 52%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/align.cpp.o -[ 47%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o -[ 47%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/cifdiff.cpp +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/cif.cpp.o -MF CMakeFiles/gemmi_py.dir/python/cif.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/cif.cpp +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/align.cpp.o -MF CMakeFiles/gemmi_py.dir/python/align.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/align.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/align.cpp +[ 52%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o +[ 54%] Building CXX object CMakeFiles/gemmi_py.dir/python/gemmi.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/cif2mtz.cpp +[ 54%] Building CXX object CMakeFiles/gemmi_py.dir/python/meta.cpp.o +[ 54%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o +[ 54%] Building CXX object CMakeFiles/gemmi_py.dir/python/grid.cpp.o +[ 56%] Building CXX object CMakeFiles/gemmi_py.dir/python/mol.cpp.o +[ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o +[ 60%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/h.cpp.o +[ 62%] Building CXX object CMakeFiles/gemmi_py.dir/python/hkl.cpp.o +[ 62%] Building CXX object CMakeFiles/gemmi_py.dir/python/monlib.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/gemmi.cpp.o -MF CMakeFiles/gemmi_py.dir/python/gemmi.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/gemmi.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/gemmi.cpp -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/custom.cpp.o -MF CMakeFiles/gemmi_py.dir/python/custom.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/custom.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/custom.cpp -[ 45%] Building CXX object CMakeFiles/gemmi_py.dir/python/cif.cpp.o -[ 62%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o -[ 62%] Building CXX object CMakeFiles/gemmi_py.dir/python/elem.cpp.o -[ 64%] Building CXX object CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/align.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/align.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/align.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/align.cpp -[ 67%] Building CXX object CMakeFiles/gemmi_py.dir/python/mol.cpp.o -[ 67%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/h.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/cif2json.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/cifdiff.cpp +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/elem.cpp.o -MF CMakeFiles/gemmi_py.dir/python/elem.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/elem.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/elem.cpp +[ 64%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o +[ 64%] Building CXX object CMakeFiles/gemmi_py.dir/python/scaling.cpp.o +[ 64%] Building CXX object CMakeFiles/gemmi_py.dir/python/read.cpp.o +[ 64%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/grid.cpp.o -MF CMakeFiles/gemmi_py.dir/python/grid.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/grid.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/grid.cpp +[ 66%] Building CXX object CMakeFiles/gemmi_py.dir/python/mtz.cpp.o +[ 66%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/contact.cpp -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/align.cpp.o -MF CMakeFiles/gemmi_py.dir/python/align.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/align.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/align.cpp +[ 66%] Building CXX object CMakeFiles/gemmi_py.dir/python/sf.cpp.o +[ 67%] Building CXX object CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o +[ 69%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o +[ 64%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o +[ 71%] Building CXX object CMakeFiles/gemmi_py.dir/python/search.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/contents.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/convert.cpp /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/crd.cpp -[ 58%] Building CXX object CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -[ 58%] Building CXX object CMakeFiles/gemmi_py.dir/python/hkl.cpp.o -[ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/h.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/h.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/h.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/h.cpp -[ 58%] Building CXX object CMakeFiles/gemmi_py.dir/python/meta.cpp.o -[ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/ecalc.cpp -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/cif.cpp.o -MF CMakeFiles/gemmi_py.dir/python/cif.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/cif.cpp -[ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -[ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -[ 69%] Building CXX object CMakeFiles/gemmi_py.dir/python/read.cpp.o -[ 71%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o -[ 71%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -[ 71%] Building CXX object CMakeFiles/gemmi_py.dir/python/scaling.cpp.o -[ 71%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/main.cpp.o -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/elem.cpp.o -MF CMakeFiles/gemmi_py.dir/python/elem.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/elem.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/elem.cpp -[ 69%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o -[ 73%] Building CXX object CMakeFiles/gemmi_py.dir/python/search.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wno-psabi -MD -MT CMakeFiles/gemmi_py.dir/python/hkl.cpp.o -MF CMakeFiles/gemmi_py.dir/python/hkl.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/hkl.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/hkl.cpp -[ 73%] Building CXX object CMakeFiles/gemmi_py.dir/python/monlib.cpp.o -[ 75%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/map.cpp.o -[ 75%] Building CXX object CMakeFiles/gemmi_py.dir/python/sf.cpp.o +[ 73%] Building CXX object CMakeFiles/gemmi_py.dir/python/sym.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/ecalc.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/meta.cpp.o -MF CMakeFiles/gemmi_py.dir/python/meta.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/meta.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/meta.cpp -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/cif2mtz.cpp +[ 66%] Building CXX object CMakeFiles/gemmi_py.dir/python/custom.cpp.o +[ 73%] Building CXX object CMakeFiles/gemmi_py.dir/python/topo.cpp.o +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/custom.cpp.o -MF CMakeFiles/gemmi_py.dir/python/custom.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/custom.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/custom.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/fprime.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/mol.cpp.o -MF CMakeFiles/gemmi_py.dir/python/mol.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/mol.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/mol.cpp -[ 75%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/contents.cpp -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wno-psabi -MD -MT CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -MF CMakeFiles/gemmi_py.dir/python/mtz.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/mtz.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/monlib.cpp.o -MF CMakeFiles/gemmi_py.dir/python/monlib.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/monlib.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/monlib.cpp -[ 77%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -[ 79%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -[ 79%] Building CXX object CMakeFiles/gemmi_py.dir/python/sym.cpp.o -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/convert.cpp -[ 79%] Building CXX object CMakeFiles/gemmi_py.dir/python/topo.cpp.o -[ 81%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/grep.cpp +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wno-psabi -MD -MT CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -MF CMakeFiles/gemmi_py.dir/python/mtz.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/mtz.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/h.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/h.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/h.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/h.cpp +[ 75%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/read.cpp.o -MF CMakeFiles/gemmi_py.dir/python/read.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/read.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/read.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wno-psabi -MD -MT CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o -MF CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/recgrid.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/scaling.cpp.o -MF CMakeFiles/gemmi_py.dir/python/scaling.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/scaling.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/scaling.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/search.cpp.o -MF CMakeFiles/gemmi_py.dir/python/search.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/search.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/search.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/sf.cpp.o -MF CMakeFiles/gemmi_py.dir/python/sf.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/sf.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/sf.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/json2cif.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/sym.cpp.o -MF CMakeFiles/gemmi_py.dir/python/sym.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/sym.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/sym.cpp -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/fprime.cpp -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/grep.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/topo.cpp.o -MF CMakeFiles/gemmi_py.dir/python/topo.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/topo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/topo.cpp -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/json2cif.cpp +[ 77%] Building CXX object CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o +[ 77%] Building CXX object CMakeFiles/gemmi_py.dir/python/write.cpp.o +[ 77%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/main.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/main.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/main.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/main.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/main.cpp +[ 79%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/map.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/map.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/map.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/map.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/map.cpp +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -MF CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/unitcell.cpp +/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/write.cpp.o -MF CMakeFiles/gemmi_py.dir/python/write.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/write.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/write.cpp +[ 79%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/map2sf.cpp -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/mapcoef.cpp -/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/mask.cpp +[ 81%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/merge.cpp -[ 81%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o +[ 81%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o +[ 83%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/mask.cpp +/usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/mapcoef.cpp +[ 83%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/mondiff.cpp -[ 83%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o +[ 84%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/monlib_opt.cpp -[ 84%] Building CXX object CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -MF CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/unitcell.cpp -[ 84%] Building CXX object CMakeFiles/gemmi_py.dir/python/write.cpp.o -/usr/bin/c++ -Dgemmi_py_EXPORTS -I/usr/include/python3.13 -I/usr/share/nanobind/include -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_py.dir/python/write.cpp.o -MF CMakeFiles/gemmi_py.dir/python/write.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/write.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/python/write.cpp [ 84%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-psabi -MD -MT CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/prog/mtz.cpp [ 86%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o @@ -1040,20 +1076,20 @@ make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [100%] Built target gemmi_py make -f CMakeFiles/gemmi_stub.dir/build.make CMakeFiles/gemmi_stub.dir/depend -make -f CMakeFiles/gemmi_cif_stub.dir/build.make CMakeFiles/gemmi_cif_stub.dir/depend make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/gemmi_cif_stub.dir/build.make CMakeFiles/gemmi_cif_stub.dir/depend cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_stub.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cif_stub.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/gemmi_stub.dir/build.make CMakeFiles/gemmi_stub.dir/build make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/gemmi_cif_stub.dir/build.make CMakeFiles/gemmi_cif_stub.dir/build -make -f CMakeFiles/gemmi_stub.dir/build.make CMakeFiles/gemmi_stub.dir/build make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +[100%] Generating py/gemmi/cif.pyi [100%] Generating py/gemmi/py.typed, py/gemmi/__init__.pyi /usr/bin/python3 /usr/share/nanobind/stubgen.py -q -i py -p /build/reproducible-path/gemmi-0.7.1+ds/python/stubs.pat -M py/gemmi/py.typed -m gemmi -o py/gemmi/__init__.pyi -[100%] Generating py/gemmi/cif.pyi /usr/bin/python3 /usr/share/nanobind/stubgen.py -q -i py -m gemmi.cif -o py/gemmi/cif.pyi make[3]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [100%] Built target gemmi_cif_stub @@ -1065,7 +1101,7 @@ debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_auto_build -- check - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" check VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" check VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.7.1+ds -B/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check @@ -1076,63 +1112,63 @@ make[4]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/depend -make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/depend -make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/depend make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake "--color=" -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/hello.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/depend make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/depend +cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/hello.dir/DependInfo.cmake "--color=" +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example2.dir/DependInfo.cmake "--color=" -Dependencies file "CMakeFiles/options.dir/prog/options.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/align.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +Dependencies file "CMakeFiles/options.dir/prog/options.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/options.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/ccp4.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". -make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". -make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/build -make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target options Dependencies file "CMakeFiles/gemmi_cpp.dir/src/fprime.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/gz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/intensit.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/json.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/pdb.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/select.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/symmetry.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/to_json.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". -Dependencies file "CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". -[ 2%] Building CXX object CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -MF CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o.d -o CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/cif_cc.cpp -[ 4%] Building CXX object CMakeFiles/hello.dir/examples/hello.cpp.o -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/hello.dir/examples/hello.cpp.o -MF CMakeFiles/hello.dir/examples/hello.cpp.o.d -o CMakeFiles/hello.dir/examples/hello.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/examples/hello.cpp -Consolidate compiler generated dependencies of target options -make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/build -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/options.dir/build'. make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +Dependencies file "CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +[ 2%] Building CXX object CMakeFiles/hello.dir/examples/hello.cpp.o +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/hello.dir/examples/hello.cpp.o -MF CMakeFiles/hello.dir/examples/hello.cpp.o.d -o CMakeFiles/hello.dir/examples/hello.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/examples/hello.cpp +[ 6%] Building CXX object CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o [ 6%] Built target options +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -MF CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o.d -o CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/cif_cc.cpp Consolidate compiler generated dependencies of target gemmi_cpp make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/build @@ -1142,46 +1178,46 @@ [ 39%] Built target gemmi_cpp make -f CMakeFiles/gemmi_prog.dir/build.make CMakeFiles/gemmi_prog.dir/depend make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/depend +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/doc_example.dir/build.make CMakeFiles/doc_example.dir/depend make -f CMakeFiles/doc_newmtz.dir/build.make CMakeFiles/doc_newmtz.dir/depend make -f CMakeFiles/test_disulf.dir/build.make CMakeFiles/test_disulf.dir/depend make -f CMakeFiles/check_conn.dir/build.make CMakeFiles/check_conn.dir/depend make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/DependInfo.cmake "--color=" -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/cpptest.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example.dir/DependInfo.cmake "--color=" -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_newmtz.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/test_disulf.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_newmtz.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/doc_example.dir/DependInfo.cmake "--color=" +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/check_conn.dir/DependInfo.cmake "--color=" Dependencies file "CMakeFiles/gemmi_prog.dir/prog/align.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". +make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". -Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cif2json.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". +make -f CMakeFiles/test_disulf.dir/build.make CMakeFiles/test_disulf.dir/build +Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make -f CMakeFiles/doc_newmtz.dir/build.make CMakeFiles/doc_newmtz.dir/build make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/doc_example.dir/build.make CMakeFiles/doc_example.dir/build -make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/build +make -f CMakeFiles/check_conn.dir/build.make CMakeFiles/check_conn.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/cifdiff.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". -make -f CMakeFiles/doc_newmtz.dir/build.make CMakeFiles/doc_newmtz.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/contact.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". -make -f CMakeFiles/test_disulf.dir/build.make CMakeFiles/test_disulf.dir/build -make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/check_conn.dir/build.make CMakeFiles/check_conn.dir/build +make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/crd.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -make[5]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". @@ -1208,32 +1244,32 @@ Dependencies file "CMakeFiles/gemmi_prog.dir/prog/validate.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". +[ 41%] Building CXX object CMakeFiles/test_disulf.dir/tests/disulf.cpp.o Dependencies file "CMakeFiles/gemmi_prog.dir/prog/xds2mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/link.d" is newer than depends file "/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". -[ 41%] Building CXX object CMakeFiles/cpptest.dir/tests/cif.cpp.o -[ 41%] Building CXX object CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o -[ 50%] Building CXX object CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -[ 43%] Building CXX object CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -[ 45%] Building CXX object CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -[ 52%] Building CXX object CMakeFiles/doc_example.dir/src/resinfo.cpp.o -[ 52%] Building CXX object CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -[ 41%] Building CXX object CMakeFiles/cpptest.dir/tests/windowsh.cpp.o [ 41%] Building CXX object CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -[ 41%] Building CXX object CMakeFiles/cpptest.dir/tests/main.cpp.o -[ 41%] Building CXX object CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -[ 41%] Building CXX object CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o +[ 43%] Building CXX object CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o +[ 45%] Building CXX object CMakeFiles/cpptest.dir/tests/main.cpp.o +[ 45%] Building CXX object CMakeFiles/cpptest.dir/tests/cif.cpp.o /usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -MF CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o.d -o CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/newmtz.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -MF CMakeFiles/test_disulf.dir/tests/disulf.cpp.o.d -o CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/tests/disulf.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/sym.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/sym.cpp /usr/bin/c++ -DUSE_STD_SNPRINTF=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/cpptest.dir/tests/cif.cpp.o -MF CMakeFiles/cpptest.dir/tests/cif.cpp.o.d -o CMakeFiles/cpptest.dir/tests/cif.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/tests/cif.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/mutate.cpp +[ 45%] Building CXX object CMakeFiles/cpptest.dir/tests/windowsh.cpp.o +/usr/bin/c++ -DUSE_STD_SNPRINTF=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/cpptest.dir/tests/main.cpp.o -MF CMakeFiles/cpptest.dir/tests/main.cpp.o.d -o CMakeFiles/cpptest.dir/tests/main.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/tests/main.cpp +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -MF CMakeFiles/test_disulf.dir/tests/disulf.cpp.o.d -o CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/tests/disulf.cpp /usr/bin/c++ -DUSE_STD_SNPRINTF=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/cpptest.dir/tests/windowsh.cpp.o -MF CMakeFiles/cpptest.dir/tests/windowsh.cpp.o.d -o CMakeFiles/cpptest.dir/tests/windowsh.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/tests/windowsh.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/src/resinfo.cpp.o -MF CMakeFiles/doc_example.dir/src/resinfo.cpp.o.d -o CMakeFiles/doc_example.dir/src/resinfo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/resinfo.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/elem.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/elem.cpp /usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -MF CMakeFiles/check_conn.dir/examples/check_conn.cpp.o.d -o CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/examples/check_conn.cpp -/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/resinfo.cpp +[ 47%] Building CXX object CMakeFiles/doc_example.dir/docs/code/elem.cpp.o +[ 50%] Building CXX object CMakeFiles/doc_example.dir/docs/code/cell.cpp.o +[ 50%] Building CXX object CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o +[ 50%] Building CXX object CMakeFiles/doc_example.dir/docs/code/sym.cpp.o +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/sym.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/sym.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/sym.cpp +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/elem.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/elem.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/elem.cpp +[ 50%] Building CXX object CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o /usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/cell.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/cell.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/cell.cpp -/usr/bin/c++ -DUSE_STD_SNPRINTF=1 -I/build/reproducible-path/gemmi-0.7.1+ds/third_party -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/cpptest.dir/tests/main.cpp.o -MF CMakeFiles/cpptest.dir/tests/main.cpp.o.d -o CMakeFiles/cpptest.dir/tests/main.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/tests/main.cpp +[ 52%] Building CXX object CMakeFiles/doc_example.dir/src/resinfo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/resinfo.cpp +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o -MF CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o.d -o CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/docs/code/mutate.cpp +/usr/bin/c++ -I/build/reproducible-path/gemmi-0.7.1+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -UNDEBUG -MD -MT CMakeFiles/doc_example.dir/src/resinfo.cpp.o -MF CMakeFiles/doc_example.dir/src/resinfo.cpp.o.d -o CMakeFiles/doc_example.dir/src/resinfo.cpp.o -c /build/reproducible-path/gemmi-0.7.1+ds/src/resinfo.cpp Consolidate compiler generated dependencies of target gemmi_prog make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/gemmi_prog.dir/build.make CMakeFiles/gemmi_prog.dir/build @@ -1254,26 +1290,26 @@ [ 93%] Built target print-version [ 93%] Linking CXX executable doc_example /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_example.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable doc_newmtz +/usr/bin/cmake -E cmake_link_script CMakeFiles/doc_newmtz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/doc_example.dir/link.d CMakeFiles/doc_example.dir/docs/code/sym.cpp.o CMakeFiles/doc_example.dir/docs/code/elem.cpp.o CMakeFiles/doc_example.dir/docs/code/resinfo.cpp.o CMakeFiles/doc_example.dir/docs/code/cell.cpp.o CMakeFiles/doc_example.dir/docs/code/mutate.cpp.o CMakeFiles/doc_example.dir/src/resinfo.cpp.o -o doc_example libgemmi_cpp.a /usr/lib/x86_64-linux-gnu/libz.so make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 93%] Built target doc_example -[ 93%] Linking CXX executable doc_newmtz -/usr/bin/cmake -E cmake_link_script CMakeFiles/doc_newmtz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/doc_newmtz.dir/link.d CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -o doc_newmtz libgemmi_cpp.a /usr/lib/x86_64-linux-gnu/libz.so make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 93%] Built target doc_newmtz -[ 95%] Linking CXX executable test_disulf -/usr/bin/cmake -E cmake_link_script CMakeFiles/test_disulf.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_disulf.dir/link.d CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -o test_disulf libgemmi_cpp.a /usr/lib/x86_64-linux-gnu/libz.so -make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' -[ 95%] Built target test_disulf -[ 95%] Linking CXX executable doc_example2 +[ 93%] Linking CXX executable doc_example2 /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_example2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/doc_example2.dir/link.d CMakeFiles/doc_example2.dir/docs/code/cif_cc.cpp.o -o doc_example2 make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' +[ 95%] Linking CXX executable test_disulf +/usr/bin/cmake -E cmake_link_script CMakeFiles/test_disulf.dir/link.txt --verbose=1 [ 95%] Built target doc_example2 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_disulf.dir/link.d CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -o test_disulf libgemmi_cpp.a /usr/lib/x86_64-linux-gnu/libz.so +make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 97%] Linking CXX executable check_conn /usr/bin/cmake -E cmake_link_script CMakeFiles/check_conn.dir/link.txt --verbose=1 +[ 97%] Built target test_disulf /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/check_conn.dir/link.d CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -o check_conn libgemmi_cpp.a /usr/lib/x86_64-linux-gnu/libz.so make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [ 97%] Built target check_conn @@ -1297,11 +1333,11 @@ Test project /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu Connected to MAKE jobserver Start 1: cpptest -1/1 Test #1: cpptest .......................... Passed 0.02 sec +1/1 Test #1: cpptest .......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 0.02 sec +Total Test time (real) = 0.01 sec make[5]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' @@ -1310,10 +1346,10 @@ make[2]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/gemmi-0.7.1+ds' dh_auto_test -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu @@ -1336,7 +1372,7 @@ 1: [doctest] test cases: 14 | 14 passed | 0 failed | 0 skipped 1: [doctest] assertions: 129 | 129 passed | 0 failed | 1: [doctest] Status: SUCCESS! -1/1 Test #1: cpptest .......................... Passed 0.01 sec +1/1 Test #1: cpptest .......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 @@ -1346,7 +1382,7 @@ dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/gemmi-0.7.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/gemmi-0.7.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.7.1+ds -B/build/reproducible-path/gemmi-0.7.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1358,109 +1394,109 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/bin/gemmi -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/util.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/twin.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/symmetry.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cif2mtz.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/atox.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/asumask.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/it92.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/modify.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/enumstr.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/reciproc.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/blob.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/addends.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmcif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_cif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/linkhunt.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/monlib.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqid.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fourier.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/smcif.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/intensit.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pirfasta.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fail.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/xds2mtz.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cellred.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/contact.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fprime.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/neighbor.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_json.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/xds_ascii.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/scaling.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/solmask.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/calculate.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/polyheur.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/floodfill.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fstream.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/metadata.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/riding_h.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cifdoc.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/dirwalk.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/topo.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/gz.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/read_cif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pdb_id.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/qcp.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/polyheur.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_mmcif.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pdb.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/calculate.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/chemcomp.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/neutron92.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/scaling.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/bond_idx.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/binner.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/refln.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/dencalc.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/model.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/modify.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/bessel.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cif2mtz.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/stats.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_chemcomp.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmcif.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/recgrid.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/c4322.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fileutil.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/small.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/elem.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mtz2cif.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/assembly.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/util.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/eig3.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fprime.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/asudata.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/crd.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmread.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_pdb.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/logger.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/formfact.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/small.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/serialize.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/resinfo.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/input.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/chemcomp.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/json.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmdb.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pdb_id.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/asudata.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/atof.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/sfcalc.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/symmetry.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/reciproc.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/asumask.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ccp4.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/intensit.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/serialize.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmread_gz.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/model.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/version.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/linkhunt.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/topo.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/formfact.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/read_cif.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/monlib.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/sprintf.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/iterator.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_chemcomp.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/logger.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/grid.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/addends.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_pdb.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/blob.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/span.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/neighbor.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/utf.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/floodfill.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/math.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/bessel.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqtools.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pdb.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/neutron92.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/input.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/enumstr.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ddl.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/dirwalk.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/gz.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/metadata.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/unitcell.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/levmar.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/utf.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cifdoc.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/xds_ascii.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/fast_float.h -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/tinydir.h --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/bond_idx.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/sfcalc.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmdb.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/xds2mtz.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mtz2cif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqalign.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/dencalc.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqid.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/sprintf.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/numb.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmcif_impl.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ecalc.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/levmar.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/align.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/stats.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_mmcif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/json.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/cellred.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/qcp.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/riding_h.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/interop.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/elem.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mtz.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fourier.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/recgrid.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/contact.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/refln.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/assembly.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fileutil.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/binner.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/atof.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/pirfasta.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fail.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/unitcell.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/grid.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ecalc.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/numb.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqalign.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/fstream.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/version.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/resinfo.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/twin.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/select.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/smcif.hpp --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/ddl.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/solmask.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/to_cif.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/atox.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmread.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/seqtools.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mtz.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/align.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/mmcif_impl.hpp +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/include/gemmi/it92.hpp -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libgemmi_cpp.a -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets.cmake -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-targets-none.cmake @@ -1468,32 +1504,32 @@ -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/gemmi/gemmi-config-version.cmake -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/gemmi_ext.cpython-313-x86_64-linux-gnu.so -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/sub_ccd.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/mtz_i_sigi.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/col_order.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/merge_mtz_mmcif.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/ccd_subgraph.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/from_json.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/patterson_slice.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/ccd_gi.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/matthews.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/monomers.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/weight.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/to_rdkit.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/maskdiff.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/map2mtz.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/simple_search.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/mtrix_iso.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/mtz_i_sigi.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/long_geom.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/cif_i_sigi.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/monomers.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/aafreq.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/mtrix_iso.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/rama_plot.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/rama_gather.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/qq-plot.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/multiproc.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/matthews.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/map2mtz.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/sub_ccd.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/ccd_subgraph.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/refln-stats.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/rama_gather.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/maskdiff.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/merge_mtz_mmcif.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/from_json.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/multiproc.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/to_rdkit.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/patterson_slice.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/col_order.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/aafreq.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/simple_search.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/maskcheck.py +-- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/cif_i_sigi.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/hello.py --- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/examples/rama_plot.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/__init__.py -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/py.typed -- Installing: /build/reproducible-path/gemmi-0.7.1+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi/__init__.pyi @@ -1529,11 +1565,11 @@ dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'python3-gemmi-dbgsym' in '../python3-gemmi-dbgsym_0.7.1+ds-1~exp1_amd64.deb'. dpkg-deb: building package 'gemmi' in '../gemmi_0.7.1+ds-1~exp1_amd64.deb'. dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.7.1+ds-1~exp1_amd64.deb'. -dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.7.1+ds-1~exp1_amd64.deb'. dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.7.1+ds-1~exp1_amd64.deb'. +dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.7.1+ds-1~exp1_amd64.deb'. +dpkg-deb: building package 'python3-gemmi-dbgsym' in '../python3-gemmi-dbgsym_0.7.1+ds-1~exp1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../gemmi_0.7.1+ds-1~exp1_amd64.buildinfo dpkg-genchanges --build=binary -O../gemmi_0.7.1+ds-1~exp1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1541,12 +1577,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3486490/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2696947 and its subdirectories -I: Current time: Sat Aug 2 16:27:19 -12 2025 -I: pbuilder-time-stamp: 1754195239 +I: removing directory /srv/workspace/pbuilder/3486490 and its subdirectories +I: Current time: Sun Sep 6 00:57:13 +14 2026 +I: pbuilder-time-stamp: 1788605833