Diff of the two buildlogs: -- --- b1/build.log 2025-07-29 13:47:08.315486371 +0000 +++ b2/build.log 2025-07-29 14:42:03.859217500 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Aug 31 07:30:26 -12 2026 -I: pbuilder-time-stamp: 1788204626 +I: Current time: Wed Jul 30 03:47:19 +14 2025 +I: pbuilder-time-stamp: 1753796839 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying skip-test_io_img.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3438373/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2715201/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 29 13:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2715201/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2715201/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='817d540a4f1c46a1be073a7dfeb379d2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3438373' - PS1='# ' - PS2='> ' + INVOCATION_ID=7f70c682eb7446dfa4c31622d96a5e75 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2715201 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dXWa2iJf/pbuilderrc_IJr1 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dXWa2iJf/b1 --logfile b1/build.log openstructure_2.10.0-1~exp.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dXWa2iJf/pbuilderrc_1VKh --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dXWa2iJf/b2 --logfile b2/build.log openstructure_2.10.0-1~exp.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3438373/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2715201/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -606,7 +638,7 @@ Get: 446 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5.sip amd64 12.17.0-1+b1 [61.6 kB] Get: 447 http://deb.debian.org/debian unstable/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-2 [2508 kB] Get: 448 http://deb.debian.org/debian unstable/main amd64 voronota amd64 1.29.4307+ds-2 [2780 kB] -Fetched 353 MB in 14s (24.6 MB/s) +Fetched 353 MB in 19s (18.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19849 files and directories currently installed.) @@ -2048,8 +2080,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Aug 31 19:34:50 UTC 2026. -Universal Time is now: Mon Aug 31 19:34:50 UTC 2026. +Local time is now: Tue Jul 29 13:52:50 UTC 2025. +Universal Time is now: Tue Jul 29 13:52:50 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.2) ... @@ -2435,7 +2467,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/openstructure-2.10.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../openstructure_2.10.0-1~exp_source.changes +I: user script /srv/workspace/pbuilder/2715201/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/2715201/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/openstructure-2.10.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../openstructure_2.10.0-1~exp_source.changes dpkg-buildpackage: info: source package openstructure dpkg-buildpackage: info: source version 2.10.0-1~exp dpkg-buildpackage: info: source distribution experimental @@ -2509,8 +2545,8 @@ Static Libraries (-DENABLE_STATIC) : OFF Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON Hidden object visibility (-DHIDDEN_VISIBILITY) : OFF --- Configuring done (9.8s) --- Generating done (2.2s) +-- Configuring done (7.3s) +-- Generating done (2.7s) CMake Warning: Manually-specified variables were not used by the project: @@ -2526,1273 +2562,1273 @@ -- Build files have been written to: /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/openstructure-2.10.0' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openstructure-2.10.0 -B/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/depend +make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color=" -make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend -make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake "--color=" +make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color=" -make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake "--color=" -make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color=" -make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake "--color=" -make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color=" -make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend -make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color=" -make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib +make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color=" -make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend +make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color=" +make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color=" +make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/bin make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/base/src/CMakeFiles/create_stage.dir/build.make modules/base/src/CMakeFiles/create_stage.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color=" -make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend -make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend -make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend -make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.py +make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.py +make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.py +make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.py +[ 0%] Built target subst___init__.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./__init__.py +make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color=" +make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/tests make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.py -make -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build -make -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 0%] Built target ost_geom_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.py -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./__init__.py +[ 0%] Built target ost_db_pymod make -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build -make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend -make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend -make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 0%] Built target ost_conop_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/images/logo-small.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png +make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/add_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png -make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color=" +[ 0%] Built target create_stage +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.py +make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png +[ 0%] Built target ost_gfx_pymod +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color=" -make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color=" -make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.py +make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color=" +make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build +[ 0%] Built target gui_images +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/__init__.py +make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.py make -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/actions /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./__init__.py +make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color=" +make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/bin +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color=" +make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.py +make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend +make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/images/logo-small.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color=" make -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.py +make -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.py -make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.py +make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./__init__.py +make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build -make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.py -make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./__init__.py +make -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.py +[ 0%] Built target ost_img_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.py +make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.py +[ 0%] Built target ost_gui_dng_pymod +[ 0%] Built target ost_img_alg_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./views.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./views.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh +make -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build +[ 0%] Built target ost_info_pymod +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.py +make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh +[ 0%] Built target ost_mol_pymod +[ 0%] Built target ost_io_pymod +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./qsscoring.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscoring.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/./antechamber.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./antechamber.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh +make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build -make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color=" +make -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 0%] Built target ost_gui_pymod make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.py +make -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./trajectory_analysis.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./trajectory_analysis.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.5 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.py -make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.5 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png +[ 0%] Built target ost_mol_mm_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./structure_analysis.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./structure_analysis.py +make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./views.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./views.py -make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build +[ 0%] Built target ost_bindings_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color=" +[ 0%] Built target ost_seq_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./renumber.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.py +make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py +[ 0%] Built target subst_ost_config make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.5 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color=" +make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend +[ 0%] Built target subst_ost_startup.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/actions /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.5 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.py -[ 0%] Built target ost_geom_pymod -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.py -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target subst___init__.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.py -make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend +make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/tests -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target ost_db_pymod +make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./aaindex.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color=" +make -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/./antechamber.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./antechamber.py -[ 0%] Built target ost_info_pymod -[ 0%] Built target gui_images -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.py -[ 0%] Built target ost_mol_pymod +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.5 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.py +[ 0%] Built target scene_icons +make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures +make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./renumber.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target ost_conop_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex1 /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target ost_img_alg_pymod +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.py -[ 0%] Built target ost_io_pymod make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh +make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-structures /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh +make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.py -[ 0%] Built target subst_ost_config -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.py -[ 0%] Built target ost_img_pymod -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./qsscoring.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscoring.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./aaindex.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png -[ 0%] Built target ost_seq_pymod -[ 0%] Built target subst_dng -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.py -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target subst_ost_startup.py -[ 0%] Built target create_stage -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.py +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.py [ 0%] Built target subst_ost -make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./config.hh +make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-structures-legacy /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy -make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./trajectory_analysis.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./trajectory_analysis.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.py -make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend -make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png +make -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh +[ 0%] Built target subst_dng +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target ost_mol_mm_pymod -[ 0%] Built target ost_gfx_pymod -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh +make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend -make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./version.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./version.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend -make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color=" -make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend -make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend -make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend -make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.py +make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.py +[ 0%] Built target actions +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh +make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex1 /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex1 -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color=" -make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color=" -make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color=" -make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh +[ 0%] Built target ost_seq_alg_pymod +make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./table.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.py +make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color=" -make -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build -make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend -make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend +make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh +[ 0%] Built target ost_config_headers make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh +make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.py +make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./structure_analysis.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./structure_analysis.py -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color=" +make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex2 -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh +make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build -make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.py -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.py +make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.py make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.py +make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build +[ 0%] Built target ost_bindings_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/__init__.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./config.hh +make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color=" +make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend +[ 0%] Built target ost_mol_mm_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -make -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color=" +make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh +make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 0%] Built target ost_gui_dng_pymod -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./conop.hh -make -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh +make -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.py -make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./def.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh +make -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh +[ 0%] Built target ost_base_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.py make -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh -make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build -[ 0%] Built target actions make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.py make -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh -make -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./log.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./scoring_base.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring_base.py make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./dllexport.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh -make -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color=" +make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_parser.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./exc.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/aaindex/aaindex3 +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_error.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./processor.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./version.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./version.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./geom.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/test_utils/compare_files.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/__init__.py -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_writer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./generic_property.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./amino_acids.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.py cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh -[ 0%] Built target ost_config_headers -[ 0%] Built target ost_bindings_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./linear_indexer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat2.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./integrity_error.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_data.json +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/star_writer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh -[ 0%] Built target ost_seq_alg_pymod -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./diag.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./binary_container.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh make -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./invalid_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat3.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.py +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clear.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh +[ 0%] Built target ost_mol_alg_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh +make -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'. make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_list.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./model_check.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh -[ 0%] Built target ost_base_pymod +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_group.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.py -[ 0%] Built target ost_config -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./ptr_observer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_item.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./heuristic.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./mat4.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png -[ 0%] Built target ost_gui_pymod -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./log.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.py cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./settings.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.py -[ 0%] Built target ost_db_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./log_sink.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec2.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/io_profile.hh +[ 0%] Built target ost_config +[ 0%] Built target ost_db_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./profile.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./sequence_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec3.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./dyn_cast.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_path.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_region.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.py cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec4.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./observer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_set.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh -[ 0%] Built target scene_icons -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./rule_based.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./convolute.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.py cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./stdint_msc.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_visitor.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./correlate.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./range.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh -[ 0%] Built target ost_bindings_pymod -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/conop/./ring_finder.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/wireframe_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/wireframe_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./units.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./scoring_base.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring_base.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/query_editor.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/query_editor.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./index.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./units.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./dft.hh [ 0%] Built target ost_conop_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./constants.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/share/openstructure/stereo_data.json -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./topology.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./message.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/info/./item_type_cast.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/./profile_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh +[ 0%] Built target ost_seq_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fft.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./platform.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh +[ 0%] Built target ost_gui_scene_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh +[ 0%] Built target ost_info_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh -[ 0%] Built target ost_mol_alg_pymod -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/mm/./steep.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fill.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./filter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/index.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./string_ref.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh -[ 0%] Built target ost_info_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./algorithm.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh -[ 0%] Built target ost_seq_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.py cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./pod_vector.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./circle_mask.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./histogram.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./fixed_string.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite2_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh -[ 0%] Built target ost_mol_mm_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./tri_matrix.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh +[ 0%] Built target ost_geom_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/save_entity.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./composite_mask.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./composite3_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_entity.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/./paged_array.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./quat.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./transform.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./point_cloud.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/geom/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_handle.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh -[ 0%] Built target ost_geom_headers make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh +[ 0%] Built target ost_base_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_algorithm.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh +[ 0%] Built target ost_seq_alg_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./atom_view.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_observer.hh make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/load_surface.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh +[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bond_table.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh -[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.py -[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./negate.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/mat2.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data_types.hh +[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh +[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_base.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/mat3.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./molck.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/mat4.cc [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh -[ 0%] Built target ost_seq_alg_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./data.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vec3.cc -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./debug.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat2_op.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different 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/build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite2_op.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh -[ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -[ 0%] Built target ost_base_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/transform.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh [ 0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat2_op.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat3_op.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./dllexport.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat4_op.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF 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/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/omf.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_class.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o cd 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/build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/point_cloud.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.py +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_iterator.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite3_op.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/load_map.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh +[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o [ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_view.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/quat.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent_mask.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.py -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chain_type.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite2_op.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./extent.hh -[ 1%] Built target ost_mol_alg_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different 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/build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different 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/build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./chem_type.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/quat.cc make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh +[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/transform.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_factory.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh +[ 1%] Built target ost_mol_alg_headers +[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/aligned_cuboid.cc +[ 1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/point_cloud.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./randomize.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh -[ 1%] Built target ost_gui_scene_pymod +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/image_format.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_group.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_source.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_list.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./coord_frame.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image_state.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./mol.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./image.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./threshold.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./inverted_mask.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./map.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_visitor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/tiff_util.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./transformations.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/img/jpk_util.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_view.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./null_data.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_pass.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./observable.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./polar.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./paste_impl.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./line_average.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./ics_editor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./peak.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./phase.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./property_id.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./color.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./physical_units.hh -[ 1%] Built target ost_img_alg_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_error.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh +[ 1%] Built target ost_img_alg_headers cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_state.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point_list.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./point.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/load.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./polygon_mask.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_prop.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/seq/save.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./progress.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./residue_view.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./size.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./sec_structure.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_manager.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./spherical_mask.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./binary_data_source.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./util.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_builder.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./container_serialization.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./value_util.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./builder.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./swap_util.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./vecmat.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_handle.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_utils.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./surface_prop.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/state.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_exception.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./convert.hh [ 1%] Built target ost_img_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./converting_streams.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./formatted_line.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./input.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_writer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_parser.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./prim_list.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./star_writer.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./selection.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_info.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_writer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./surface.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./io_profile.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./view_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./texture.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./dcd_io.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/button_box.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/event_button.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./bounding_box.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh +[ 1%] Built target ost_mol_headers cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./transform.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/mol/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gl_include.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./glext_include.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./render_mode.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh -[ 1%] Built target ost_mol_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./material.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_reader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./module_config.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_writer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./primitives.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./povray.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_slab.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_reader.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_writer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh +[ 1%] Built target ost_gfx_headers +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_str.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_str.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh -[ 1%] Built target ost_gfx_headers -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save_entity.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_entity.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_surface.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pdb_str.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sdf_str.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./mmcif_str.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./omf.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_browser.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_viewer.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gl_win.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./save.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_menu.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./gosty_app.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./load_map.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./admin.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./module_config.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./image_format.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_area.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./perspective.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./scene_selection.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./main_window.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./dock_widget.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh +[ 1%] Built target ost_io_headers cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_pool.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_registry.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./tiff_util.hh cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/gui/./file_loader.hh -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include/ost/io/./jpk_util.hh -make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' [ 1%] Built target ost_gui_headers -[ 1%] Built target ost_io_headers [ 1%] Linking CXX shared library ../../../stage/lib/libost_geom.so cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_geom.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.10 -o ../../../stage/lib/libost_geom.so.2.10.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib @@ -3800,69 +3836,69 @@ make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' [ 1%] Built target ost_geom make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend +make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color=" -make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o [ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o +[ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/generic_property.cc +[ 1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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-I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/generic_property.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/string_ref.cc -[ 1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/platform.cc -[ 1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/units.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vecmat2_op.cc +[ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong 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modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vec3.cc -[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/profile.cc.o [ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG 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/build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vec4.cc +[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o +[ 2%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o +[ 2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o -MF 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/build/reproducible-path/openstructure-2.10.0/modules/base/src/string_ref.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/platform.cc +[ 2%] Building CXX object 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-cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_mat4.cc.o -MF CMakeFiles/_ost_geom.dir/export_mat4.cc.o.d -o CMakeFiles/_ost_geom.dir/export_mat4.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_mat4.cc +[ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_composite2_op.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_composite3_op.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_transform.cc [ 5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o -MF CMakeFiles/_ost_geom.dir/export_quat.cc.o.d -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_quat.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_transform.cc [ 5%] Linking CXX shared library ../../../stage/lib/libost_base.so cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_base.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_base.so.2.10 -o ../../../stage/lib/libost_base.so.2.10.0 CMakeFiles/ost_base.dir/generic_property.cc.o CMakeFiles/ost_base.dir/log.cc.o CMakeFiles/ost_base.dir/log_sink.cc.o CMakeFiles/ost_base.dir/profile.cc.o CMakeFiles/ost_base.dir/units.cc.o CMakeFiles/ost_base.dir/string_ref.cc.o CMakeFiles/ost_base.dir/platform.cc.o CMakeFiles/ost_base.dir/message.cc.o CMakeFiles/ost_base.dir/test_utils/compare_files.cc.o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 @@ -3876,23 +3912,23 @@ make -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_impl.cc [ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_handle.cc +cd 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/usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_handle.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_item.cc +[ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_path.cc +[ 5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o [ 6%] 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-I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_verbose_visitor.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/geom_info_conversion.cc +[ 6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_verbose_visitor.cc [ 6%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/geom/_ost_geom.so cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_geom.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 @@ -3905,14 +3941,14 @@ make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_units.cc [ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -[ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_range.cc -[ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -MF CMakeFiles/_ost_base.dir/wrap_base.cc.o.d -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/wrap_base.cc +[ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o -MF CMakeFiles/_ost_base.dir/export_logger.cc.o.d -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_logger.cc +[ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_range.cc +[ 6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_units.cc [ 6%] Linking CXX shared library ../../../stage/lib/libost_info.so cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_info.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.10 -o ../../../stage/lib/libost_info.so.2.10.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 @@ -3920,92 +3956,88 @@ make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' [ 6%] Built target ost_info make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend -make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src 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'/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK 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/build/reproducible-path/openstructure-2.10.0/modules/img/base/src/circle_mask.cc [ 6%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -MF CMakeFiles/ost_img.dir/composite_mask.cc.o.d -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/composite_mask.cc -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data_algorithm.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o -MF CMakeFiles/ost_img.dir/circle_mask.cc.o.d -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/circle_mask.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data.cc -[ 7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -MF CMakeFiles/ost_img.dir/data_observer.cc.o.d -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data_observer.cc -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o +[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o +[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o [ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF CMakeFiles/ost_img.dir/extent_iterator.cc.o.d -o 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-ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/inverted_mask.cc -[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -[ 7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/map.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data_algorithm.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -MF CMakeFiles/ost_mol.dir/atom_handle.cc.o.d -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/atom_handle.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/extent_mask.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/atom_view.cc +[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/atom_view.cc +[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o cd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data.cc +[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_base.cc +[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/extent_mask.cc +[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o +[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o +[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -MF CMakeFiles/ost_img.dir/extent.cc.o.d -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/extent.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_view.cc -[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_base.cc -[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_handle.cc -[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_type.cc -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o -MF CMakeFiles/ost_img.dir/image_handle.cc.o.d -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_handle.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_frame.cc +[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o +[ 8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o -MF CMakeFiles/ost_img.dir/image_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_factory.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_list.cc -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/editor_base.cc -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_base.cc +[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o -MF CMakeFiles/ost_img.dir/image_impl.cc.o.d -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_impl.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_group.cc +[ 8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o +[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o +[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/editor_base.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_list.cc +[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o +[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_handle.cc +[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/inverted_mask.cc +[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/map.cc +[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_observer.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_property_mapper.cc +[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_base.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o -MF CMakeFiles/ost_img.dir/mask_op.cc.o.d -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_op.cc +[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o +[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_view.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/not_connected_error.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_frame.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_handle.cc -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_observer.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_group.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/ics_editor.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -MF CMakeFiles/ost_img.dir/mask.cc.o.d -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/ics_editor.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o -MF CMakeFiles/ost_img.dir/observable.cc.o.d -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/observable.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o -MF CMakeFiles/ost_img.dir/paste_impl.cc.o.d -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/paste_impl.cc @@ -4013,66 +4045,70 @@ cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o -MF CMakeFiles/ost_img.dir/peak.cc.o.d -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/peak.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o -MF CMakeFiles/ost_img.dir/phase.cc.o.d -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/phase.cc -[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query.cc +[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/not_connected_error.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o -MF CMakeFiles/ost_img.dir/physical_units.cc.o.d -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/physical_units.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o -MF CMakeFiles/ost_img.dir/pixel_sampling.cc.o.d -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/pixel_sampling.cc +[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -MF CMakeFiles/ost_mol.dir/property_id.cc.o.d -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/property_id.cc [ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o -MF CMakeFiles/ost_img.dir/point_list.cc.o.d -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/point_list.cc +[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query.cc [ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o -MF CMakeFiles/ost_mol.dir/query_error.cc.o.d -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query_error.cc [ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o -MF CMakeFiles/ost_img.dir/point.cc.o.d -o CMakeFiles/ost_img.dir/point.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/point.cc +[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/polygon_mask.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o -MF CMakeFiles/ost_mol.dir/query_state.cc.o.d -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query_state.cc -[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/polygon_mask.cc -[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -MF CMakeFiles/ost_mol.dir/residue_base.cc.o.d -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_base.cc [ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o -MF CMakeFiles/ost_img.dir/progress.cc.o.d -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/progress.cc -[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -MF CMakeFiles/ost_mol.dir/residue_handle.cc.o.d -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_handle.cc -[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o -MF CMakeFiles/ost_mol.dir/residue_view.cc.o.d -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_view.cc -[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/surface_builder.cc [ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o -MF CMakeFiles/ost_img.dir/size.cc.o.d -o CMakeFiles/ost_img.dir/size.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/size.cc [ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o -MF CMakeFiles/ost_img.dir/spherical_mask.cc.o.d -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/spherical_mask.cc +[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -MF CMakeFiles/ost_mol.dir/residue_base.cc.o.d -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_base.cc [ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o -MF CMakeFiles/ost_img.dir/mask_info_convert.cc.o.d -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_info_convert.cc -[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/surface_handle.cc [ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_factory.cc +[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.cc +[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base.cc +[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -MF CMakeFiles/ost_mol.dir/residue_handle.cc.o.d -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_handle.cc +[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o -MF CMakeFiles/ost_mol.dir/residue_view.cc.o.d -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_view.cc +[ 13%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.cc +[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/surface_builder.cc +[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/surface_handle.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -MF CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/transfer_connectivity.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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/build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/view_op.cc [ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o -MF CMakeFiles/ost_mol.dir/coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_source.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -MF CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/in_mem_coord_source.cc -[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o -MF CMakeFiles/ost_mol.dir/bounding_box.cc.o.d -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/bounding_box.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl.cc -[ 15%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o @@ -4084,8 +4120,8 @@ [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_ast.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast.cc [ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_ast.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl.cc [ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl.cc @@ -4109,80 +4145,86 @@ make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/anisotropic.cc -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o [ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/auto_correlate.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/correlate.cc -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o -MF CMakeFiles/ost_img_alg.dir/convolute.cc.o.d -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/convolute.cc -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/correlate.cc +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/cross_correlate.cc -[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o -MF CMakeFiles/ost_img_alg.dir/density_slice.cc.o.d -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/density_slice.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/dft.cc +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o -MF CMakeFiles/ost_img_alg.dir/fft.cc.o.d -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fft.cc +[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/gaussian.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o -MF CMakeFiles/ost_img_alg.dir/fft.cc.o.d -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fft.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/gaussian_gradient_magnitude.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -MF CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o.d -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/highest_peak_search_3d.cc +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o [ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o -MF CMakeFiles/ost_img_alg.dir/histogram.cc.o.d -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/histogram.cc +[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o +[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o +[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o +[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o +[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -MF CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o.d -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/highest_peak_search_3d.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -MF CMakeFiles/ost_img_alg.dir/line_iterator.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/line_iterator.cc +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/local_sigma_threshold.cc -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/mask_image.cc -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/normalizer.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/normalizer_factory.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_linear.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/norm_linear.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_log.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/norm_log.cc -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/normalizer.cc -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_od.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/norm_od.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -MF CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/power_spectrum.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o -MF CMakeFiles/ost_img_alg.dir/stat.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/stat.cc -[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 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object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/smooth_mask_image.cc -[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o -MF CMakeFiles/ost_img_alg.dir/stat.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/stat.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -MF CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/stat_min_max.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_transform.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/alg_transform.cc -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 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/build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fractional_shift.cc -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/threshold.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK 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/usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/alg_mirror.cc +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK 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/usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/threshold.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/discrete_shrink.cc -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o -[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o -MF CMakeFiles/ost_img_alg.dir/transformations.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/transformations.cc +[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -MF CMakeFiles/ost_img_alg.dir/transformation_base.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/transformation_base.cc +[ 20%] 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/usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fractional_shift.cc +[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/line_average.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -MF CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o.d -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/rscrosscorr.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o -MF CMakeFiles/ost_img_alg.dir/polar.cc.o.d -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/polar.cc +[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/line_average.cc +[ 21%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 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CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img_alg.so.2.10 ../../../../stage/lib/libost_img_alg.so +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 21%] Built target ost_img_alg [ 21%] Linking CXX shared library ../../../../stage/lib/libost_mol.so cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.10 -o ../../../../stage/lib/libost_mol.so.2.10.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 @@ -4195,32 +4237,45 @@ make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o +[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_handle.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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/usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_handle.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -MF CMakeFiles/ost_seq.dir/aligned_region.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/aligned_region.cc -[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o +[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o -MF CMakeFiles/ost_seq.dir/aligned_column.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/aligned_column.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_list.cc [ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o +[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o -MF CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/alignment_handle.cc +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_list.cc +[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_op.cc [ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -MF CMakeFiles/ost_seq.dir/views_from_sequences.cc.o.d -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/views_from_sequences.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o -MF CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/alignment_handle.cc [ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/profile_handle.cc -[ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_op.cc -[ 22%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.10 -o ../../../../stage/lib/libost_img_alg.so.2.10.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libfftw3f.so /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img_alg.so.2.10 ../../../../stage/lib/libost_img_alg.so +[ 22%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_base.dir/link.d -Wl,-z,relro -shared -o ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/settings.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/stutil.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/table.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/table_selector.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/xmlrunner.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)" +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/testutils.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 22%] Built target ost_img_alg +[ 22%] Built target _ost_base +make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 22%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/pymod/wrap_info.cc [ 22%] Linking CXX shared library ../../../../stage/lib/libost_seq.so cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_seq.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.10 -o ../../../../stage/lib/libost_seq.so.2.10.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o -L/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/lib: /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.15 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 @@ -4228,9 +4283,9 @@ make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' [ 22%] Built target ost_seq make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend -make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color=" +make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color=" make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend @@ -4238,61 +4293,61 @@ cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build -make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' +[ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -MF CMakeFiles/ost_db.dir/sqlite_wrap.cc.o.d -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/sqlite_wrap.cc make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' make -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build +[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu' -[ 22%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/linear_indexer.cc +[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o +[ 23%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -MF CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o.d -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc -[ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -[ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -[ 22%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -MF CMakeFiles/ost_db.dir/binary_container.cc.o.d -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/binary_container.cc +[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -MF CMakeFiles/ost_db.dir/extract_data_helper.cc.o.d -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/extract_data_helper.cc -[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o +[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc [ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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/usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/clip_alignment.cc -[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -cd 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-isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/entropy.cc -[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/merge_pairwise_alignments.cc -[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/global_align.cc cd 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-DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/merge_pairwise_alignments.cc +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/local_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/local_align.cc +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/semiglobal_align.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/variance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/variance_map.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/sequence_identity.cc cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/sequence_similarity.cc +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/variance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/variance_map.cc +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/subst_weight_matrix.cc +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o +cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/hmm_pseudo_counts.cc +[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/hmm_score.cc [ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -MF CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o.d -o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/wrap_parasail.cc -cd /build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/hmm_pseudo_counts.cc In file included from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/param_set.h:7, from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:6, from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:20: @@ -4466,25 +4521,6 @@ /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:3030:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3030 | for (i=0;i