Diff of the two buildlogs: -- --- b1/build.log 2025-02-11 12:19:24.730304590 +0000 +++ b2/build.log 2025-02-11 12:23:53.042231892 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Mar 16 06:33:29 -12 2026 -I: pbuilder-time-stamp: 1773686009 +I: Current time: Wed Feb 12 02:19:27 +14 2025 +I: pbuilder-time-stamp: 1739276367 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/952127/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 11 12:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f6a318bc13e7435cab62b0a2bd73cf04' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='952127' - PS1='# ' - PS2='> ' + INVOCATION_ID=ad0fa84d992c45ef90ebce85c6549990 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1016538 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K55VzHY2/pbuilderrc_Tia2 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K55VzHY2/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K55VzHY2/pbuilderrc_bJBY --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K55VzHY2/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/952127/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 61 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 41.4 MB in 0s (95.3 MB/s) +Fetched 41.4 MB in 0s (107 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19920 files and directories currently installed.) @@ -468,7 +500,11 @@ fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental @@ -538,7 +574,7 @@ to work with policies introduced by or earlier. --- Configuring done (2.8s) +-- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -562,31 +598,31 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build +make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp -In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: -/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 323 | setDate(parser, __DATE__); - | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ +In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: +/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 323 | setDate(parser, __DATE__); + | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function @@ -4227,158 +4263,158 @@ Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 - 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.35 sec + 1/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.23 sec Start 13: test_search_blastn_sa_m9 - 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.36 sec + 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.24 sec Start 14: test_search_blastn_sa_sam - 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.41 sec + 3/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.24 sec Start 15: test_search_blastn_sa_bam - 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.40 sec + 4/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.27 sec Start 16: test_search_blastn_sa_m9.gz - 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.50 sec + 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.42 sec Start 17: test_search_blastn_sa_sam.bz2 - 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.61 sec + 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.54 sec Start 18: test_search_blastn_fm_m0 - 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.94 sec - 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.91 sec + 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.69 sec Start 19: test_search_blastn_fm_m8 + 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.74 sec Start 20: test_search_blastn_fm_m9 - 9/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.04 sec + 9/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.80 sec Start 21: test_search_blastn_fm_sam -10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.06 sec +10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.82 sec Start 22: test_search_blastn_fm_bam -11/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.50 sec +11/80 Test #15: test_search_blastn_sa_bam ........ Passed 1.94 sec Start 23: test_search_blastn_fm_m9.gz -12/80 Test #13: test_search_blastn_sa_m9 ......... Passed 3.04 sec +12/80 Test #13: test_search_blastn_sa_m9 ......... Passed 1.97 sec Start 24: test_search_blastn_fm_sam.bz2 -13/80 Test #12: test_search_blastn_sa_m8 ......... Passed 3.42 sec +13/80 Test #12: test_search_blastn_sa_m8 ......... Passed 2.29 sec Start 25: test_search_blastp_sa_m0 -14/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.50 sec +14/80 Test #20: test_search_blastn_fm_m9 ......... Passed 1.70 sec Start 26: test_search_blastp_sa_m8 -15/80 Test #14: test_search_blastn_sa_sam ........ Passed 3.51 sec +15/80 Test #19: test_search_blastn_fm_m8 ......... Passed 1.81 sec Start 27: test_search_blastp_sa_m9 -16/80 Test #11: test_search_blastn_sa_m0 ......... Passed 3.99 sec +16/80 Test #11: test_search_blastn_sa_m0 ......... Passed 2.62 sec Start 28: test_search_blastp_sa_sam -17/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 3.97 sec +17/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 2.66 sec Start 29: test_search_blastp_sa_bam -18/80 Test #22: test_search_blastn_fm_bam ........ Passed 3.34 sec +18/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.11 sec Start 30: test_search_blastp_sa_m9.gz -19/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.03 sec +19/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.73 sec Start 31: test_search_blastp_sa_sam.bz2 -20/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.16 sec +20/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.20 sec +21/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.55 sec Start 32: test_search_blastp_fm_m0 -21/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.85 sec Start 33: test_search_blastp_fm_m8 -22/80 Test #19: test_search_blastn_fm_m8 ......... Passed 3.92 sec +22/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.61 sec Start 34: test_search_blastp_fm_m9 -23/80 Test #20: test_search_blastn_fm_m9 ......... Passed 3.93 sec +23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.82 sec Start 35: test_search_blastp_fm_sam -24/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.06 sec +24/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 2.78 sec Start 36: test_search_blastp_fm_bam -25/80 Test #18: test_search_blastn_fm_m0 ......... Passed 4.73 sec +25/80 Test #18: test_search_blastn_fm_m0 ......... Passed 2.69 sec Start 37: test_search_blastp_fm_m9.gz -26/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 2.58 sec +26/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.66 sec Start 38: test_search_blastp_fm_sam.bz2 -27/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.81 sec +27/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.48 sec +28/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.42 sec Start 39: test_search_blastx_sa_m0 -28/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.80 sec Start 40: test_search_blastx_sa_m8 -29/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.76 sec +29/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.44 sec Start 41: test_search_blastx_sa_m9 -30/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.32 sec +30/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.54 sec Start 42: test_search_blastx_sa_sam -31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.16 sec +31/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.34 sec Start 43: test_search_blastx_sa_bam -32/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.30 sec +32/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.58 sec Start 44: test_search_blastx_sa_m9.gz -33/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.90 sec +33/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.44 sec Start 45: test_search_blastx_sa_sam.bz2 -34/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.80 sec +34/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.50 sec Start 46: test_search_blastx_fm_m0 -35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.82 sec +35/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.45 sec Start 47: test_search_blastx_fm_m8 -36/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.81 sec +36/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.55 sec Start 48: test_search_blastx_fm_m9 -37/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.03 sec +37/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 1.97 sec Start 49: test_search_blastx_fm_sam -38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 3.64 sec +38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 2.43 sec Start 50: test_search_blastx_fm_bam -39/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.34 sec +39/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.14 sec Start 51: test_search_blastx_fm_m9.gz -40/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.18 sec +40/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.24 sec Start 52: test_search_blastx_fm_sam.bz2 -41/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.28 sec +41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 1.60 sec Start 53: test_search_tblastn_sa_m0 -42/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.30 sec +42/80 Test #43: test_search_blastx_sa_bam ........ Passed 1.56 sec Start 54: test_search_tblastn_sa_m8 -43/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.91 sec +43/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.30 sec Start 55: test_search_tblastn_sa_m9 -44/80 Test #40: test_search_blastx_sa_m8 ......... Passed 3.73 sec +44/80 Test #39: test_search_blastx_sa_m0 ......... Passed 1.67 sec Start 56: test_search_tblastn_sa_sam -45/80 Test #43: test_search_blastx_sa_bam ........ Passed 3.87 sec +45/80 Test #42: test_search_blastx_sa_sam ........ Passed 1.76 sec Start 57: test_search_tblastn_sa_bam -46/80 Test #39: test_search_blastx_sa_m0 ......... Passed 4.35 sec +46/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.99 sec Start 58: test_search_tblastn_sa_m9.gz -47/80 Test #42: test_search_blastx_sa_sam ........ Passed 4.35 sec +47/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.37 sec Start 59: test_search_tblastn_sa_sam.bz2 -48/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 4.48 sec +48/80 Test #50: test_search_blastx_fm_bam ........ Passed 0.91 sec Start 60: test_search_tblastn_fm_m0 -49/80 Test #41: test_search_blastx_sa_m9 ......... Passed 4.60 sec +49/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 2.51 sec Start 61: test_search_tblastn_fm_m8 -50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.51 sec +50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.51 sec Start 62: test_search_tblastn_fm_m9 -51/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 5.52 sec +51/80 Test #57: test_search_tblastn_sa_bam ....... Passed 1.45 sec Start 63: test_search_tblastn_fm_sam -52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.36 sec +52/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 3.15 sec Start 64: test_search_tblastn_fm_bam -53/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.24 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 1.77 sec Start 65: test_search_tblastn_fm_m9.gz -54/80 Test #56: test_search_tblastn_sa_sam ....... Passed 3.01 sec +54/80 Test #56: test_search_tblastn_sa_sam ....... Passed 1.73 sec Start 66: test_search_tblastn_fm_sam.bz2 -55/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.78 sec +55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 1.85 sec Start 67: test_search_tblastx_sa_m0 -56/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.71 sec +56/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.50 sec Start 68: test_search_tblastx_sa_m8 -57/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.43 sec +57/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 2.14 sec Start 69: test_search_tblastx_sa_m9 -58/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 4.18 sec +58/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 2.03 sec Start 70: test_search_tblastx_sa_sam -59/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 3.35 sec +59/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 1.84 sec Start 71: test_search_tblastx_sa_bam -60/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.96 sec +60/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.33 sec Start 72: test_search_tblastx_sa_m9.gz -61/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.48 sec +61/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 1.46 sec Start 73: test_search_tblastx_sa_sam.bz2 -62/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.35 sec +62/80 Test #63: test_search_tblastn_fm_sam ....... Passed 1.37 sec Start 74: test_search_tblastx_fm_m0 -63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.75 sec +63/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 2.53 sec Start 75: test_search_tblastx_fm_m8 -64/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 4.41 sec +64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 1.35 sec Start 76: test_search_tblastx_fm_m9 -65/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 2.55 sec +65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.74 sec Start 77: test_search_tblastx_fm_sam -66/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.76 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 1.74 sec Start 78: test_search_tblastx_fm_bam -67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 5.62 sec +67/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 3.13 sec Start 79: test_search_tblastx_fm_m9.gz -68/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 8.18 sec +68/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 3.60 sec Start 80: test_search_tblastx_fm_sam.bz2 -69/80 Test #71: test_search_tblastx_sa_bam ....... Passed 9.07 sec -70/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 8.35 sec -71/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 10.64 sec -72/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 10.09 sec -73/80 Test #77: test_search_tblastx_fm_sam ....... Passed 9.91 sec -74/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 12.98 sec -75/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 13.65 sec -76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 14.08 sec -77/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 7.12 sec -78/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 15.15 sec -79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 18.91 sec -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 12.28 sec +69/80 Test #78: test_search_tblastx_fm_bam ....... Passed 3.12 sec +70/80 Test #71: test_search_tblastx_sa_bam ....... Passed 4.44 sec +71/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 4.98 sec +72/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 4.99 sec +73/80 Test #70: test_search_tblastx_sa_sam ....... Passed 5.26 sec +74/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 4.27 sec +75/80 Test #77: test_search_tblastx_fm_sam ....... Passed 4.27 sec +76/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 6.10 sec +77/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 6.76 sec +78/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 2.90 sec +79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 6.68 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 4.46 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 34.58 sec +Total Test time (real) = 16.13 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build @@ -4391,23 +4427,23 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend -make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend +make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build -make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -[ 50%] Built target lambda_indexer -[100%] Built target lambda +make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' +make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +[ 50%] Built target lambda +[100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall @@ -4478,12 +4514,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1016538/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/952127 and its subdirectories -I: Current time: Mon Mar 16 06:42:23 -12 2026 -I: pbuilder-time-stamp: 1773686543 +I: removing directory /srv/workspace/pbuilder/1016538 and its subdirectories +I: Current time: Wed Feb 12 02:23:51 +14 2025 +I: pbuilder-time-stamp: 1739276631