Diff of the two buildlogs: -- --- b1/build.log 2025-09-04 14:54:04.209507168 +0000 +++ b2/build.log 2025-09-04 14:55:14.617591655 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 4 02:48:33 -12 2025 -I: pbuilder-time-stamp: 1756997313 +I: Current time: Thu Oct 8 11:17:05 +14 2026 +I: pbuilder-time-stamp: 1791407825 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2519594/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 7 21:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9d030d7cfe01494497e32d4f64391ef1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2519594' - PS1='# ' - PS2='> ' + INVOCATION_ID=f6c5ff4fd7cd4322ad999725c841d2f6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=509964 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UJfAjk96/pbuilderrc_xFmW --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UJfAjk96/b1 --logfile b1/build.log bppsuite_2.4.1-7.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UJfAjk96/pbuilderrc_Pdys --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UJfAjk96/b2 --logfile b2/build.log bppsuite_2.4.1-7.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2519594/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -201,7 +233,7 @@ Get: 82 http://deb.debian.org/debian forky/main amd64 tex-common all 6.19 [29.4 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 texinfo-lib amd64 7.2-4 [807 kB] Get: 84 http://deb.debian.org/debian forky/main amd64 texinfo all 7.2-4 [1974 kB] -Fetched 44.7 MB in 1s (33.4 MB/s) +Fetched 44.7 MB in 0s (109 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -561,7 +593,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable @@ -611,8 +647,8 @@ -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) --- Configuring done (1.1s) --- Generating done (0.1s) +-- Configuring done (1.2s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -623,7 +659,7 @@ -- Build files have been written to: /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -632,136 +668,136 @@ make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend -make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake "--color=" make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake "--color=" make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/doc /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/doc /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc/CMakeFiles/info.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/man /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build +make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 2%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -MF CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o.d -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build -[ 5%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -[ 7%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -MF CMakeFiles/bppreroot.dir/bppReRoot.cpp.o.d -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppReRoot.cpp -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -MF CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o.d -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPopStats.cpp -[ 10%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 2%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o +[ 5%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o +[ 7%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o -MF CMakeFiles/bpppars.dir/bppPars.cpp.o.d -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPars.cpp -[ 15%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -[ 13%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -[ 18%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -[ 21%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -MF CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o.d -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -MF CMakeFiles/bppdist.dir/bppDist.cpp.o.d -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppDist.cpp -[ 23%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -[ 28%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o -[ 28%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -MF CMakeFiles/bppancestor.dir/bppAncestor.cpp.o.d -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAncestor.cpp -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -MF CMakeFiles/bppml.dir/bppML.cpp.o.d -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppML.cpp -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -MF CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o.d -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o -MF CMakeFiles/bppconsense.dir/bppConsense.cpp.o.d -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppConsense.cpp -[ 34%] Compressing manpage bppdist.1 +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp +[ 10%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o +[ 13%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -MF CMakeFiles/bppml.dir/bppML.cpp.o.d -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppML.cpp +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -MF CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o.d -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp +[ 18%] Compressing manpage bppreroot.1 +[ 18%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o +[ 21%] Compressing manpage bppancestor.1 +[ 23%] Compressing manpage bpppars.1 +[ 26%] Compressing manpage bppmixedlikelihoods.1 +[ 31%] Compressing manpage bppdist.1 +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -MF CMakeFiles/bppancestor.dir/bppAncestor.cpp.o.d -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAncestor.cpp +[ 39%] Generating info page +[ 39%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o +[ 34%] Compressing manpage bppseqman.1 +[ 42%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppreroot.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppreroot.1.gz +[ 42%] Compressing manpage bpptreedraw.1 +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppars.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppars.1.gz +[ 44%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o +[ 47%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppdist.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppdist.1.gz -[ 31%] Compressing manpage bppconsense.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppconsense.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppconsense.1.gz -[ 36%] Generating info page -[ 39%] Compressing manpage bppalnscore.1 -[ 44%] Compressing manpage bppmixedlikelihoods.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppmixedlikelihoods.1.gz -[ 42%] Compressing manpage bpppopstats.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppalnscore.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppalnscore.1.gz -[ 50%] Compressing manpage bppseqman.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppopstats.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppopstats.1.gz -[ 52%] Compressing manpage bpppars.1 -[ 47%] Compressing manpage bppancestor.1 +[ 50%] Compressing manpage bppalnscore.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc && /usr/bin/makeinfo --no-split -o /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/doc/bppsuite.info /build/reproducible-path/bppsuite-2.4.1/doc/bppsuite.texi +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -MF CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o.d -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppmixedlikelihoods.1.gz +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -MF CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o.d -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -MF CMakeFiles/bppreroot.dir/bppReRoot.cpp.o.d -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppReRoot.cpp cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppancestor.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppancestor.1.gz +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -MF CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o.d -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPopStats.cpp +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppalnscore.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppalnscore.1.gz +[ 57%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o +[ 57%] Compressing manpage bpppopstats.1 +[ 60%] Compressing manpage bppseqgen.1 +[ 60%] Compressing manpage bppml.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppseqman.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppseqman.1.gz -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppars.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppars.1.gz -[ 55%] Compressing manpage bppml.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppml.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppml.1.gz -[ 57%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -MF CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o.d -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp -[ 60%] Compressing manpage bppreroot.1 -[ 63%] Compressing manpage bpptreedraw.1 +[ 63%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpptreedraw.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpptreedraw.1.gz -[ 65%] Compressing manpage bppseqgen.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppreroot.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppreroot.1.gz +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -MF CMakeFiles/bppdist.dir/bppDist.cpp.o.d -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppDist.cpp +[ 65%] Compressing manpage bppconsense.1 +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -MF CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o.d -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppconsense.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppconsense.1.gz +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppml.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppml.1.gz +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppopstats.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppopstats.1.gz cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppseqgen.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppseqgen.1.gz make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 65%] Built target man @@ -774,56 +810,56 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppalnscore.dir/link.d CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 71%] Built target bppalnscore -[ 73%] Linking CXX executable bppconsense +[ 73%] Linking CXX executable bppseqman +[ 76%] Linking CXX executable bppconsense +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppconsense.dir/link.d CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppseqman.dir/link.d CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 73%] Built target bppconsense -[ 76%] Linking CXX executable bpptreedraw -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bpptreedraw.dir/link.d CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppconsense.dir/link.d CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 76%] Built target bpptreedraw +[ 76%] Built target bppseqman +[ 76%] Built target bppconsense [ 78%] Linking CXX executable bppreroot cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 -[ 81%] Linking CXX executable bppseqman -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 +[ 81%] Linking CXX executable bpptreedraw +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppreroot.dir/link.d CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 81%] Built target bppreroot -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppseqman.dir/link.d CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 81%] Built target bppseqman -[ 84%] Linking CXX executable bppseqgen -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bpptreedraw.dir/link.d CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 84%] Built target bppseqgen -[ 86%] Linking CXX executable bpppars +[ 81%] Built target bpptreedraw +[ 84%] Linking CXX executable bpppars cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bpppars.dir/link.d CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 86%] Built target bpppars -[ 89%] Linking CXX executable bppancestor +[ 84%] Built target bpppars +[ 86%] Linking CXX executable bppancestor cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 +[ 89%] Linking CXX executable bppmixedlikelihoods +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 89%] Built target bppancestor -[ 92%] Linking CXX executable bppml -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppml.dir/link.d CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 92%] Built target bppml -[ 94%] Linking CXX executable bppmixedlikelihoods -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 +[ 92%] Linking CXX executable bppseqgen +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppmixedlikelihoods.dir/link.d CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 94%] Built target bppmixedlikelihoods -[ 97%] Linking CXX executable bppdist +[ 92%] Built target bppmixedlikelihoods +[ 92%] Built target bppancestor +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 92%] Built target bppseqgen +[ 94%] Linking CXX executable bppdist cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 97%] Built target bppdist +[ 94%] Built target bppdist +[ 97%] Linking CXX executable bppml +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppml.dir/link.d CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 97%] Built target bppml [100%] Linking CXX executable bpppopstats cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bpppopstats.dir/link.d CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 @@ -836,7 +872,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -895,8 +931,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_amd64.deb'. -dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-7_amd64.deb'. +dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-7_amd64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -904,12 +940,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/509964/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2519594 and its subdirectories -I: Current time: Thu Sep 4 02:54:03 -12 2025 -I: pbuilder-time-stamp: 1756997643 +I: removing directory /srv/workspace/pbuilder/509964 and its subdirectories +I: Current time: Thu Oct 8 11:18:14 +14 2026 +I: pbuilder-time-stamp: 1791407894