Diff of the two buildlogs: -- --- b1/build.log 2025-11-06 05:25:34.118857583 +0000 +++ b2/build.log 2025-11-06 05:27:10.790973570 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 11 06:09:20 -12 2028 -I: pbuilder-time-stamp: 1831226960 +I: Current time: Thu Nov 6 19:25:35 +14 2025 +I: pbuilder-time-stamp: 1762406735 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying i386.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3575319/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 6 05:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='79d9ba69cae0414e9c97067f47be23fd' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3575319' - PS1='# ' - PS2='> ' + INVOCATION_ID=bbaaba71b93443c8bd26e5a521229a51 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3644059 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1i88nTXo/pbuilderrc_bVEA --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1i88nTXo/b1 --logfile b1/build.log cyvcf2_0.31.4-1.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1i88nTXo/pbuilderrc_mL7l --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1i88nTXo/b2 --logfile b2/build.log cyvcf2_0.31.4-1.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3575319/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -281,7 +313,7 @@ Get: 142 http://deb.debian.org/debian forky/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 143 http://deb.debian.org/debian forky/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 144 http://deb.debian.org/debian forky/main amd64 python3-pytest all 8.4.2-1 [266 kB] -Fetched 60.5 MB in 3s (18.1 MB/s) +Fetched 60.5 MB in 6s (10.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -751,8 +783,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Jan 11 18:09:50 UTC 2028. -Universal Time is now: Tue Jan 11 18:09:50 UTC 2028. +Local time is now: Thu Nov 6 05:26:08 UTC 2025. +Universal Time is now: Thu Nov 6 05:26:08 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -892,7 +924,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/cyvcf2-0.31.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cyvcf2_0.31.4-1_source.changes +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cyvcf2-0.31.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.31.4-1_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.31.4-1 dpkg-buildpackage: info: source distribution unstable @@ -957,8 +993,8 @@ running build_py creating /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 -copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 +copying cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2 running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO @@ -1003,34 +1039,6 @@ x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/cyvcf2.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -Ihtslib -Ihtslib/htslib -I/usr/include/python3.13 -c cyvcf2/helpers.c -o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cyvcf2-0.31.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/cyvcf2/cyvcf2.o build/temp.linux-x86_64-cpython-313/cyvcf2/helpers.o -L/usr/lib/x86_64-linux-gnu -lhts -o /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.4' -echo "cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually" -cp -a cyvcf2/tests {build_dir}/cyvcf2; seems to be ignored - copying tests dir manually -for tdir in .pybuild/cpython3_* ; do \ - cp -a cyvcf2/tests ${tdir}/build/cyvcf2 ; \ -done -dh_auto_test - pybuild --test --test-pytest -i python{version} -p 3.13 -I: pybuild base:311: cd /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build; python3.13 -m pytest -============================= test session starts ============================== -platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -rootdir: /build/reproducible-path/cyvcf2-0.31.4 -configfile: setup.cfg -plugins: typeguard-4.4.4 -collected 113 items - -cyvcf2/tests/test_cli.py . [ 0%] -cyvcf2/tests/test_hemi.py . [ 1%] -cyvcf2/tests/test_reader.py ............................................ [ 40%] -........................................................ [ 90%] -cyvcf2/tests/test_writer.py ........... [100%] - -============================= 113 passed in 1.58s ============================== - rm -fr -- /tmp/dh-xdg-rundir-cMN53iSQ -# clean up after testing -find . -name out.vcf -delete -make[1]: Leaving directory '/build/reproducible-path/cyvcf2-0.31.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1092,81 +1100,23 @@ creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.c -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-no-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.bcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/multi-contig.vcf.gz -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__init__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 +copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/relatedness.h -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/helpers.h -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/cli.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -creating /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__pycache__ -copying /build/reproducible-path/cyvcf2-0.31.4/.pybuild/cpython3_3.13_cyvcf2/build/cyvcf2/__main__.py -> /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2 -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/__main__.py to __main__.cpython-313.pyc +byte-compiling /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2/cli.py to cli.cpython-313.pyc running install_egg_info Copying cyvcf2.egg-info to /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/lib/python3.13/dist-packages/cyvcf2-0.31.4.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/reproducible-path/cyvcf2-0.31.4/debian/python3-cyvcf2/usr/bin - rm -f debian/python3-cyvcf2.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cyvcf2-0.31.4' dh_numpy3 @@ -1215,20 +1165,11 @@ D: dh_python3 pydist:175: trying to find dependency for numpy>=1.16.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3-click', 'python3-numpy', 'python3:any', 'python3 (<< 3.14)', 'python3-coloredlogs'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-click', 'python3-numpy', 'python3 (>= 3.13~)', 'python3-coloredlogs', 'python3 (<< 3.14)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild - Using 1762205228 as canonical time - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/seg.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test_gt_bases.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/o.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/bug.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz using File::StripNondeterminism::handlers::gzip - Normalizing debian/python3-cyvcf2/usr/lib/python3/dist-packages/cyvcf2/tests/multi-contig.vcf.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-cyvcf2 chmod a-x usr/share/doc/python3-cyvcf2/changelog usr/share/doc/python3-cyvcf2/changelog.Debian usr/share/man/man1/cyvcf2.1 @@ -1286,8 +1227,8 @@ dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-cyvcf2 .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cyvcf2/dbgsym-root .. -dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.4-1_amd64.deb'. dpkg-deb: building package 'python3-cyvcf2-dbgsym' in '../python3-cyvcf2-dbgsym_0.31.4-1_amd64.deb'. +dpkg-deb: building package 'python3-cyvcf2' in '../python3-cyvcf2_0.31.4-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.31.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.31.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1296,12 +1237,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3644059/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3575319 and its subdirectories -I: Current time: Tue Jan 11 06:11:33 -12 2028 -I: pbuilder-time-stamp: 1831227093 +I: removing directory /srv/workspace/pbuilder/3644059 and its subdirectories +I: Current time: Thu Nov 6 19:27:10 +14 2025 +I: pbuilder-time-stamp: 1762406830