Diff of the two buildlogs: -- --- b1/build.log 2025-09-07 14:40:50.642964463 +0000 +++ b2/build.log 2025-09-07 14:48:32.515570998 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 7 02:38:56 -12 2025 -I: pbuilder-time-stamp: 1757255936 +I: Current time: Sun Oct 11 11:03:52 +14 2026 +I: pbuilder-time-stamp: 1791666232 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying fix_build_debian.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2783320/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 10 21:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9498af7b7d5a4a47ab978ff37d78550e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2783320' - PS1='# ' - PS2='> ' + INVOCATION_ID=e007d29685964826b2f3ab696e13106f + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3640559 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CRmija2i/pbuilderrc_ueMd --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CRmija2i/b1 --logfile b1/build.log gatk-native-bindings_1.1.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CRmija2i/pbuilderrc_fl2D --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CRmija2i/b2 --logfile b2/build.log gatk-native-bindings_1.1.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2783320/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -353,7 +385,7 @@ Get: 236 http://deb.debian.org/debian forky/main amd64 gradle-debian-helper all 2.4 [24.5 kB] Get: 237 http://deb.debian.org/debian forky/main amd64 jarwrapper all 0.80 [9692 B] Get: 238 http://deb.debian.org/debian forky/main amd64 javahelper all 0.80 [80.4 kB] -Fetched 253 MB in 6s (40.3 MB/s) +Fetched 253 MB in 44s (5713 kB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -1136,8 +1168,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Sep 7 14:40:26 UTC 2025. -Universal Time is now: Sun Sep 7 14:40:26 UTC 2025. +Local time is now: Sat Oct 10 21:10:37 UTC 2026. +Universal Time is now: Sat Oct 10 21:10:37 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1534,7 +1566,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-native-bindings_1.1.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-native-bindings_1.1.0+dfsg-1_source.changes dpkg-buildpackage: info: source package gatk-native-bindings dpkg-buildpackage: info: source version 1.1.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1580,13 +1616,13 @@ dh_auto_configure -O--buildsystem=gradle jh_linkjars -O--buildsystem=gradle Duplicate specification "unlink|u" for option "u" -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=12 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=16 jar openjdk version "21.0.9-ea" 2025-10-21 OpenJDK Runtime Environment (build 21.0.9-ea+5-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.9-ea+5-Debian-1, mixed mode, sharing) @@ -1594,18 +1630,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.553 secs. -The client will now receive all logging from the daemon (pid: 2825016). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-2825016.out.log +An attempt to start the daemon took 1.01 secs. +The client will now receive all logging from the daemon (pid: 3679752). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-3679752.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7696ef50 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7696ef50 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@a2ee45c +Using 16 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@56af64a8 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@56af64a8 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7ac76497 Starting Build Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6290a0e5 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3ab664a4 Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1625,45 +1661,45 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3891ac34 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7fcd4d12 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@a2ee45c -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1fc7b6ce -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@327880bc -:compileJava (Thread[#55,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7ac76497 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@65eea30f +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7c0e1e27 +:compileJava (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.002 secs. -Up-to-date check for task ':compileJava' took 0.013 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Up-to-date check for task ':compileJava' took 0.03 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.456 secs. -:processResources (Thread[#55,Task worker for ':',5,main]) started. +:compileJava (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.775 secs. +:processResources (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.002 secs. -:classes (Thread[#55,Task worker for ':',5,main]) started. +:processResources (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. +:classes (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#55,Task worker for ':',5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#55,Task worker for ':',5,main]) started. +:classes (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build/debian/gatk-native-bindings.pom -:debianMavenPom (Thread[#55,Task worker for ':',5,main]) completed. Took 0.051 secs. -:jar (Thread[#55,Task worker for ':',5,main]) started. +:debianMavenPom (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.056 secs. +:jar (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.003 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.005 secs. It is not up-to-date because: No history is available. -:jar (Thread[#55,Task worker for ':',5,main]) completed. Took 0.03 secs. +:jar (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.066 secs. -BUILD SUCCESSFUL in 3s +BUILD SUCCESSFUL in 5s 3 actionable tasks: 3 executed make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' jh_build -O--buildsystem=gradle @@ -1676,7 +1712,7 @@ dh_auto_build -- test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=12 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-native-bindings -Dfile.encoding=UTF-8 --parallel --max-workers=16 test openjdk version "21.0.9-ea" 2025-10-21 OpenJDK Runtime Environment (build 21.0.9-ea+5-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.9-ea+5-Debian-1, mixed mode, sharing) @@ -1684,17 +1720,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.583 secs. -The client will now receive all logging from the daemon (pid: 2826503). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-2826503.out.log +An attempt to start the daemon took 0.989 secs. +The client will now receive all logging from the daemon (pid: 3679962). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/daemon/4.4.1/daemon-3679962.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6ec56f82 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6ec56f82 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f21a40e +Using 16 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e075fc0 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e075fc0 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7ea240f Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@7de2a7be +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6d96b38f Settings evaluated using settings file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/build.gradle'. Included projects: [root project 'gatk-native-bindings'] @@ -1709,56 +1745,56 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@40acb43e +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@51c23d16 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f21a40e -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@2606a97a -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d27b6cf -:compileJava (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7ea240f +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@44bbe5a7 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@27fd28e5 +:compileJava (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.005 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.022 secs). +Putting task artifact state for task ':compileJava' into context took 0.006 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.035 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.047 secs. -:processResources (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +:compileJava (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.069 secs. +:processResources (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. -:classes (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +:processResources (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. +:classes (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +:classes (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/test/java', not found Skipping task ':compileTestJava' as it has no source files and no previous output files. :compileTestJava NO-SOURCE -:compileTestJava (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:processTestResources (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +:compileTestJava (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. +:processTestResources (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. -:testClasses (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +:processTestResources (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. +:testClasses (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses UP-TO-DATE -:testClasses (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. -:test (Thread[#58,Task worker for ':' Thread 3,5,main]) started. +:testClasses (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:test (Thread[#68,Task worker for ':' Thread 3,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. +:test (Thread[#68,Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. -BUILD SUCCESSFUL in 2s +BUILD SUCCESSFUL in 4s 1 actionable task: 1 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.1.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -1769,7 +1805,7 @@ dh_auto_install --destdir=debian/libgatk-native-bindings-java/ -O--buildsystem=gradle install -m0755 -d /build/reproducible-path/gatk-native-bindings-1.1.0\+dfsg/debian/libgatk-native-bindings-java jh_installjavadoc -O--buildsystem=gradle -Duplicate specification "author|A=s" for option "A" +Duplicate specification "A" for option "A" Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=gradle install -m0755 -d debian/libgatk-native-bindings-java/usr/share/doc/libgatk-native-bindings-java @@ -1794,7 +1830,7 @@ Updating manifest in /build/reproducible-path/gatk-native-bindings-1.1.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.1.0.jar jh_manifest -O--buildsystem=gradle Duplicate specification "V:s" for option "V" -Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" find debian/libgatk-native-bindings-java -name '*.jar' Found symlink usr/share/java/gatk-native-bindings.jar Found usr/share/java/gatk-native-bindings-1.1.0.jar @@ -1881,12 +1917,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3640559/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2783320 and its subdirectories -I: Current time: Sun Sep 7 02:40:50 -12 2025 -I: pbuilder-time-stamp: 1757256050 +I: removing directory /srv/workspace/pbuilder/3640559 and its subdirectories +I: Current time: Sun Oct 11 11:11:32 +14 2026 +I: pbuilder-time-stamp: 1791666692