Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 10:46:13.149682001 +0000 +++ b2/build.log 2025-10-31 11:15:35.459659125 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 22:39:42 -12 2025 -I: pbuilder-time-stamp: 1761907182 +I: Current time: Fri Dec 4 07:09:15 +14 2026 +I: pbuilder-time-stamp: 1796317755 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -52,53 +52,85 @@ dpkg-source: info: applying fmt10.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4101407/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 17:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d4deea2ec77c4b889b846e78cfcef225' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4101407' - PS1='# ' - PS2='> ' + INVOCATION_ID=4c746f87e9be44a0ac3b5098db817aa9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25376 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WjSuggWz/pbuilderrc_pay4 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WjSuggWz/b1 --logfile b1/build.log genomicsdb_1.5.5-2.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WjSuggWz/pbuilderrc_OquW --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WjSuggWz/b2 --logfile b2/build.log genomicsdb_1.5.5-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4101407/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -692,7 +724,7 @@ Get: 496 http://deb.debian.org/debian forky/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.6 [98.2 kB] Get: 497 http://deb.debian.org/debian forky/main amd64 testng all 6.9.12-4 [795 kB] Get: 498 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.2-4 [49.9 kB] -Fetched 390 MB in 4s (94.0 MB/s) +Fetched 390 MB in 16s (24.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -2309,8 +2341,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 31 10:41:10 UTC 2025. -Universal Time is now: Fri Oct 31 10:41:10 UTC 2025. +Local time is now: Thu Dec 3 17:17:09 UTC 2026. +Universal Time is now: Thu Dec 3 17:17:09 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2941,7 +2973,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/genomicsdb-1.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genomicsdb_1.5.5-2_source.changes +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/genomicsdb-1.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../genomicsdb_1.5.5-2_source.changes dpkg-buildpackage: info: source package genomicsdb dpkg-buildpackage: info: source version 1.5.5-2 dpkg-buildpackage: info: source distribution unstable @@ -2967,7 +3003,7 @@ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake --with javahelper @@ -3068,8 +3104,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (3.7s) --- Generating done (0.3s) +-- Configuring done (26.5s) +-- Generating done (8.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -3132,8 +3168,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (1.5s) --- Generating done (0.9s) +-- Configuring done (4.3s) +-- Generating done (9.0s) -- Build files have been written to: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu # Configuring the Java part using Maven. # First we put the arch triplet in d/maven.properties for the tests. @@ -3145,11 +3181,11 @@ mh_patchpoms -plibgenomicsdb-java --debian-build --keep-pom-version --maven-repo=/build/reproducible-path/genomicsdb-1.5.5/debian/maven-repo make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' jh_linkjars -O--buildsystem=cmake -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.5 -B/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -3159,203 +3195,209 @@ make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/depend make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build.make genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 0%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o [ 0%] Built target protobuf_ep -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -[ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o -[ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -[ 2%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o -[ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -[ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/knetfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/knetfile.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/knetfile.c -[ 3%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -[ 3%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o -[ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_schema.cc make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend -[ 5%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/kstring.c.o -MF CMakeFiles/genomicsdb-hts.dir/kstring.c.o.d -o CMakeFiles/genomicsdb-hts.dir/kstring.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/kstring.c -[ 5%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle 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/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/kfunc.c -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb_utils.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_net.c +[ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec.cc +[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o +[ 1%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_read_state.cc +[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_schema.cc +[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o +[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o +[ 2%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_bit_shuffle.cc.o +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o +[ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_gzip.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_sorted_read_state.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_blosc.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_blosc.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/errmod.c.o -MF CMakeFiles/genomicsdb-hts.dir/errmod.c.o.d -o CMakeFiles/genomicsdb-hts.dir/errmod.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/errmod.c -[ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -MF CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -c 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_filter.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 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/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/multipart.c -[ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/probaln.c +[ 4%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_lz4.cc.o +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata 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-[ 11%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/realn.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_filter_delta_encode.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_filter_delta_encode.cc +[ 6%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb_utils.cc.o +[ 6%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o +[ 6%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o +[ 6%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/array/array_sorted_write_state.cc +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_rle.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_rle.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 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CMakeFiles/genomicsdb-hts.dir/sam.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/sam.c +[ 6%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/codec_zstd.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/codec_zstd.cc +[ 6%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle/iochain.c -[ 12%] Generating source/header files from .proto files +[ 6%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/knetfile.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -MF CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d -o CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/bcf_sr_sort.c +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/header.c.o -MF CMakeFiles/genomicsdb-hts.dir/header.c.o.d -o CMakeFiles/genomicsdb-hts.dir/header.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/header.c +[ 10%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/faidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/faidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/faidx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/faidx.c +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/expressions/expression.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hfile.c.o -MF CMakeFiles/genomicsdb-hts.dir/hfile.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hfile.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile.c +[ 10%] Generating source/header files from .proto files +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 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genomicsdb_vid_mapping.proto +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/read_state.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -MF CMakeFiles/genomicsdb-hts.dir/hts_os.c.o.d -o CMakeFiles/genomicsdb-hts.dir/hts_os.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hts_os.c +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/md5.c.o -MF CMakeFiles/genomicsdb-hts.dir/md5.c.o.d -o CMakeFiles/genomicsdb-hts.dir/md5.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/md5.c +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/probaln.c.o -MF CMakeFiles/genomicsdb-hts.dir/probaln.c.o.d -o CMakeFiles/genomicsdb-hts.dir/probaln.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/probaln.c +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/realn.c.o -MF CMakeFiles/genomicsdb-hts.dir/realn.c.o.d -o CMakeFiles/genomicsdb-hts.dir/realn.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/realn.c +[ 11%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o +[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/book_keeping.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/multipart.c.o -MF CMakeFiles/genomicsdb-hts.dir/multipart.c.o.d -o CMakeFiles/genomicsdb-hts.dir/multipart.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/multipart.c +[ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/write_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/write_state.cc +[ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/metadata/metadata.cc +[ 13%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc +[ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/regidx.c.o -MF CMakeFiles/genomicsdb-hts.dir/regidx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/regidx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/regidx.c +[ 14%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/error.cc +[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/region.c.o -MF CMakeFiles/genomicsdb-hts.dir/region.c.o.d -o CMakeFiles/genomicsdb-hts.dir/region.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/region.c +[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/sam.c.o -MF CMakeFiles/genomicsdb-hts.dir/sam.c.o.d -o CMakeFiles/genomicsdb-hts.dir/sam.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/sam.c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c: In function 'libcurl_open': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c:1335:9: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ -[ 12%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o In file included from /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/hfile_libcurl.c:47: /usr/include/x86_64-linux-gnu/curl/curl.h:2932:3: note: declared here 2932 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/tbx.c -[ 12%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -[ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/expressions/expression.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/expressions/expression.cc +[ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc +[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -MF CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o.d -o CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/synced_bcf_reader.c +[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcf_sweep.c -[ 13%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -cd 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genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/fragment.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/fragment.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 15%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/fragment/read_state.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/read_state.cc -[ 15%] Built target PROTOBUF_GENERATED_CXX_TARGET -[ 15%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o 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/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/fragment/write_state.cc +[ 16%] Built target PROTOBUF_GENERATED_CXX_TARGET +[ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment 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/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/mem_utils.cc +[ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/progress_bar.cc make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/depend +[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/tbx.c.o -MF CMakeFiles/genomicsdb-hts.dir/tbx.c.o.d -o CMakeFiles/genomicsdb-hts.dir/tbx.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/tbx.c cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/DependInfo.cmake "--color=" -[ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/metadata/metadata.cc -[ 16%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/metadata/metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/metadata/metadata_iterator.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 16%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcfutils.c -[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_codecs.c [ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc -[ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o +[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/textutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/textutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/textutils.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/textutils.c +[ 17%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/uri.cc +[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcf.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcf.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcf.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcf.c +[ 18%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -MF CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o.d -o CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/thread_pool.c +[ 18%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -MF CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o.d -o CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/vcfutils.c +[ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc -[ 17%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_decode.c -[ 17%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o +[ 18%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/utils.cc +[ 18%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/variant_operations_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations_columnar.cc -[ 18%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -[ 18%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/error.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/error.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/hilbert_curve.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/hilbert_curve.cc [ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf_columnar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc -[ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o +[ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_codecs.c +[ 20%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc -[ 19%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_cell.cc -[ 20%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o +[ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_storage_manager.cc -[ 20%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_data.cc -[ 20%] Building CXX object 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-I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o -MF 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc -[ 20%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_encode.c -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_external.c -[ 21%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_index.c -[ 21%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/mem_utils.cc -[ 21%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -cd 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-I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_data.cc [ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_handler.cc -[ 22%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_io.c -[ 22%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_samtools.c -[ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o +[ 22%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant.cc +[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_buffer.cc +[ 23%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_encode.c +[ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc +[ 23%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_fs.cc +[ 24%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc +[ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_manager.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3373,13 +3415,14 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 24%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_external.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:25: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3397,43 +3440,15 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -[ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_columnar_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc +[ 24%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc -[ 23%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf_columnar.cc:23: -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, - from /usr/include/c++/15/string:49, - from /usr/include/c++/15/bits/locale_classes.h:42, - from /usr/include/c++/15/bits/ios_base.h:43, - from /usr/include/c++/15/ios:46, - from /usr/include/c++/15/bits/ostream.h:43, - from /usr/include/c++/15/ostream:42, - from /usr/include/c++/15/iostream:43, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -[ 24%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/progress_bar.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/progress_bar.cc -In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3494,30 +3509,60 @@ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ -[ 24%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc -[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/load_operators.cc +[ 25%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o +[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_index.c +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc +In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_cell.cc:23: +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, + from /usr/include/c++/15/string:49, + from /usr/include/c++/15/bits/locale_classes.h:42, + from /usr/include/c++/15/bits/ios_base.h:43, + from /usr/include/c++/15/ios:46, + from /usr/include/c++/15/bits/ostream.h:43, + from /usr/include/c++/15/ostream:42, + from /usr/include/c++/15/iostream:43, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:26: +/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here + 129 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations_columnar.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_construct.h:61, - from /usr/include/c++/15/bits/stl_tempbuf.h:61, - from /usr/include/c++/15/memory:68, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:26: +In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, + from /usr/include/c++/15/string:49, + from /usr/include/c++/15/bits/locale_classes.h:42, + from /usr/include/c++/15/bits/ios_base.h:43, + from /usr/include/c++/15/ios:46, + from /usr/include/c++/15/bits/ostream.h:43, + from /usr/include/c++/15/ostream:42, + from /usr/include/c++/15/iostream:43, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/genomicsdb_importer.cc +[ 25%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_io.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_handler.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3530,14 +3575,18 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 25%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_samtools.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_cell.cc:23: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3550,14 +3599,11 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:26: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 25%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_file_base.cc -[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -3578,8 +3624,33 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/memory_measure.cc +[ 26%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_stats.c +[ 26%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/mFILE.c +In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc:25: +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, + from /usr/include/c++/15/string:49, + from /usr/include/c++/15/bits/locale_classes.h:42, + from /usr/include/c++/15/bits/ios_base.h:43, + from /usr/include/c++/15/ios:46, + from /usr/include/c++/15/bits/ostream.h:43, + from /usr/include/c++/15/ostream:42, + from /usr/include/c++/15/iostream:43, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_array_schema.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_array_schema.cc:24: +/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here + 129 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 26%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/open_trace_file.c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc: In function 'int tiledb_metadata_set_schema(TileDB_MetadataSchema*, const char*, const char**, int, int64_t, const int*, const int*, const int*, const int*)': /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/c_api/tiledb.cc:1131:22: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 1131 | (int*) malloc((attribute_num)*sizeof(int)); @@ -3587,6 +3658,7 @@ /usr/include/stdlib.h:672:14: note: in a call to allocation function 'void* malloc(size_t)' declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ +[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -3609,29 +3681,31 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc +[ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/load_operators.cc +[ 27%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_manager_config.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_data.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, - from /usr/include/c++/15/string:49, - from /usr/include/c++/15/bits/locale_classes.h:42, - from /usr/include/c++/15/bits/ios_base.h:43, - from /usr/include/c++/15/ios:46, - from /usr/include/c++/15/bits/ostream.h:43, - from /usr/include/c++/15/ostream:42, - from /usr/include/c++/15/iostream:43, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/gt_remapper.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: +In file included from /usr/include/c++/15/bits/stl_construct.h:61, + from /usr/include/c++/15/bits/stl_tempbuf.h:61, + from /usr/include/c++/15/memory:68, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 26%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/histogram.cc -In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: +[ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_posixfs.cc +[ 28%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c +In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3644,16 +3718,16 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/gt_remapper.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/gt_remapper_template_definition.h:25, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/gt_remapper_gvcf_columnar_iterator.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/genomicsdb_importer.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/variant_field_handler.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3666,13 +3740,11 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:27: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_iterators.cc:24: +In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_columnar_field.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3685,12 +3757,10 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:26: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper_pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -3717,7 +3787,8 @@ from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/load_operators.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3730,11 +3801,13 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/query_variants.cc:23: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/vid_mapper.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 28%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_file_base.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc: In member function 'void BroadCombinedGVCFOperator::handle_INFO_fields(const Variant&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:622:37: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 622 | auto stringified = std::move(m_field_handlers[bcf_ht_type]->stringify_2D_vector(*(BCF_INFO_GET_FIELD_INFO_PTR(curr_tuple)))); @@ -3757,6 +3830,16 @@ 1106 | auto null_PL_ptr = std::move(std::unique_ptr(nullptr)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/broad_combined_gvcf.cc:1106:37: note: remove 'std::move' call +[ 29%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/pooled_alloc.c +[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc +[ 30%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/rANS_static.c +[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/memory_measure.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/memory_measure.cc +[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/histogram.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc: In member function 'virtual void AlleleCountOperator::operate_on_columnar_cell(const GenomicsDBColumnarCell&, const VariantQueryConfig&, const VariantArraySchema&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:984:36: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 984 | auto REF_ALT_pair = std::move(std::pair( @@ -3768,14 +3851,21 @@ 987 | m_cell_ALT_offsets[ALT_idx+1]-m_cell_ALT_offsets[ALT_idx]-1))); //-1 to ignore delim char | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/query_operations/variant_operations.cc:984:36: note: remove 'std::move' call -[ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/lut.cc +[ 30%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/string_alloc.c +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc: In member function 'std::vector GenomicsDBMultiDVectorField::parse_and_store_numeric(const char*, size_t)': +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 436 | auto total_size_of_multi_d_data_vec = std::move(GenomicsDBMultiDVectorField::parse_and_store_numeric( + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 437 | m_rw_field_data, *m_field_info_ptr, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 438 | str, str_length)); + | ~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: note: remove 'std::move' call In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/load_operators.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc:32: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3788,17 +3878,29 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/vid_mapper.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:26: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader_file_base.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader_text_file.h:33, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc:30: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 27%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o +[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper_pb.cc +[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/lut.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/lut.cc +[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/known_field_info.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc -[ 28%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/cram_stats.c -[ 28%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/mFILE.c +[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include 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-I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper_sql.cc +[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf 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-I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -3824,34 +3926,18 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 28%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/uri.cc.o -cd 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-I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc -[ 29%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/vid_mapper_sql.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper_sql.cc -In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc:27: -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/bits/specfun.h:43, - from /usr/include/c++/15/cmath:3913, - from /usr/include/fmt/format.h:36, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc:25: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf_adapter.cc +[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc +[ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf2binary.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc:32: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc:27: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3865,53 +3951,43 @@ from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader_file_base.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader_text_file.h:33, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader_text_file.cc:30: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/known_field_info.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc:24: +/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here + 129 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +[ 34%] Building C object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cc -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/hfile_genomicsdb.c +[ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/htslib_fs_adapter.cc +[ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/variant_query_config.cc +In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc:27: +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/15/bits/stl_algobase.h:65, + from /usr/include/c++/15/bits/specfun.h:43, + from /usr/include/c++/15/cmath:3913, + from /usr/include/fmt/format.h:36, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/loader/tiledb_loader.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 29%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/open_trace_file.c -[ 30%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/pooled_alloc.c -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc: In member function 'std::vector GenomicsDBMultiDVectorField::parse_and_store_numeric(const char*, size_t)': -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 436 | auto total_size_of_multi_d_data_vec = std::move(GenomicsDBMultiDVectorField::parse_and_store_numeric( - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 437 | m_rw_field_data, *m_field_info_ptr, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 438 | str, str_length)); - | ~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc:436:50: note: remove 'std::move' call -[ 30%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/misc/utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/misc/utils.cc -[ 30%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -[ 31%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_buffer.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/timer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/timer.cc -[ 31%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_manager.cc -[ 31%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_fs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_fs.cc -[ 31%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_manager_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_manager_config.cc -[ 31%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/genomicsdb_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/genomicsdb_logger.cc -[ 31%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/rANS_static.c -[ 32%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/alleles_combiner_gvcf_columnar_iterator.cc -[ 33%] Building CXX object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/storage/storage_posixfs.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/storage/storage_posixfs.cc -[ 33%] Building C object genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cc -DVCF_ALLOW_INT64=1 -Dgenomicsdb_hts_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -MF CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o.d -o CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib/cram/string_alloc.c In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc:27: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -3924,26 +4000,10 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/gt_common.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/known_field_info.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/known_field_info.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf_adapter.cc -[ 33%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc -[ 33%] Building C object genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cc -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/storage -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/bitshuffle -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4 -std=gnu11 -fPIC -MD -MT genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -MF CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d -o CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/src/codec/external/lz4/lz4.c -[ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/vcf2binary.cc -[ 34%] Building C object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cc -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/hfile_genomicsdb.c.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/hfile_genomicsdb.c -[ 34%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/htslib_fs_adapter.cc -[ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/variant_query_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/variant_query_config.cc [ 35%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/genomicsdb_config_base.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, @@ -3989,51 +4049,20 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/vcf/genomicsdb_bcf_generator.cc:23: -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, - from /usr/include/c++/15/string:49, - from /usr/include/c++/15/bits/locale_classes.h:42, - from /usr/include/c++/15/bits/ios_base.h:43, - from /usr/include/c++/15/ios:46, - from /usr/include/c++/15/bits/ostream.h:43, - from /usr/include/c++/15/ostream:42, - from /usr/include/c++/15/iostream:43, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ +[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/pb_config.cc +[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/annotation_service.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void VidMapper::parse_string_length_descriptor(const char*, const char*, size_t, FieldLengthDescriptor&, size_t)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:757:47: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 757 | auto length_value_upper_case_str = std::move(std::string(length_value_str)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:757:47: note: remove 'std::move' call -[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/config/pb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/pb_config.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc: In member function 'void FileBasedVidMapper::common_constructor_initialization(const rapidjson::Value&)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:1269:40: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 1269 | auto class_name = std::move(std::string(vcf_field_class_array[i].GetString())); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/utils/vid_mapper.cc:1269:40: note: remove 'std::move' call -[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/annotation_service.cc -[ 37%] Linking C shared library libgenomicsdb-hts.so -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 -/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/genomicsdb-hts.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 37%] Built target genomicsdb-hts -[ 37%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -4048,12 +4077,6 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc: In member function 'const bool GenomicsDBConfigBase::has_array_name(int) const': -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc:101:53: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] - 101 | (!m_single_array_name && m_array_names.size() > rank)) { - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~ -[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_field.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -4076,24 +4099,45 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +[ 36%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc +[ 37%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_field.cc +[ 38%] Linking C shared library libgenomicsdb-hts.so +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdb-hts.dir/link.txt --verbose=1 +/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/genomicsdb-hts.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgenomicsdb-hts.so -o libgenomicsdb-hts.so "CMakeFiles/genomicsdb-hts.dir/kfunc.c.o" "CMakeFiles/genomicsdb-hts.dir/knetfile.c.o" "CMakeFiles/genomicsdb-hts.dir/kstring.c.o" "CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o" "CMakeFiles/genomicsdb-hts.dir/bgzf.c.o" "CMakeFiles/genomicsdb-hts.dir/errmod.c.o" "CMakeFiles/genomicsdb-hts.dir/faidx.c.o" "CMakeFiles/genomicsdb-hts.dir/header.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_libcurl.c.o" "CMakeFiles/genomicsdb-hts.dir/hfile_net.c.o" "CMakeFiles/genomicsdb-hts.dir/hts.c.o" "CMakeFiles/genomicsdb-hts.dir/hts_os.c.o" "CMakeFiles/genomicsdb-hts.dir/md5.c.o" "CMakeFiles/genomicsdb-hts.dir/multipart.c.o" "CMakeFiles/genomicsdb-hts.dir/probaln.c.o" "CMakeFiles/genomicsdb-hts.dir/realn.c.o" "CMakeFiles/genomicsdb-hts.dir/regidx.c.o" "CMakeFiles/genomicsdb-hts.dir/region.c.o" "CMakeFiles/genomicsdb-hts.dir/sam.c.o" "CMakeFiles/genomicsdb-hts.dir/synced_bcf_reader.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf_sweep.c.o" "CMakeFiles/genomicsdb-hts.dir/tbx.c.o" "CMakeFiles/genomicsdb-hts.dir/textutils.c.o" "CMakeFiles/genomicsdb-hts.dir/thread_pool.c.o" "CMakeFiles/genomicsdb-hts.dir/vcf.c.o" "CMakeFiles/genomicsdb-hts.dir/vcfutils.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_io.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_samtools.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/cram_stats.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/mFILE.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/open_trace_file.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/pooled_alloc.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/rANS_static.c.o" "CMakeFiles/genomicsdb-hts.dir/cram/string_alloc.c.o" /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 38%] Built target genomicsdb-hts [ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_plink.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_plink.cc +[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_utils.cc +[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_json_processor.cc +[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc: In member function 'const bool GenomicsDBConfigBase::has_array_name(int) const': +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/genomicsdb_config_base.cc:101:53: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] + 101 | (!m_single_array_name && m_array_names.size() > rank)) { + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc: In member function 'rapidjson::Document GenomicsDBConfigBase::read_from_file(const std::string&, int)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:193:43: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 193 | rapidjson::Document json_doc = std::move(parse_json_file(filename)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:193:43: note: remove 'std::move' call +[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc: In member function 'void GenomicsDBImportConfig::read_from_file(const std::string&, int)': /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:704:43: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 704 | rapidjson::Document json_doc = std::move(GenomicsDBConfigBase::read_from_file(filename, rank)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_callsets_mapping.pb.cc /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/config/json_config.cc:704:43: note: remove 'std::move' call -[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_utils.cc -[ 38%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb_json_processor.cc -[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_coordinates.pb.cc +[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc +[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_import_config.pb.cc +[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -4112,14 +4156,6 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_callsets_mapping.pb.cc -[ 39%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc -[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_import_config.pb.cc -[ 40%] Building CXX object src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -MF CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d -o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/genomicsdb_vid_mapping.pb.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -4142,14 +4178,14 @@ make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 40%] Linking CXX static library libgenomicsdb-tiledb.a cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core && /usr/bin/cmake -P CMakeFiles/tiledb_static.dir/cmake_clean_target.cmake @@ -4165,46 +4201,46 @@ [ 41%] Built target tiledb_static make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend -make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build @@ -4212,69 +4248,69 @@ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build -make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build -make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -[ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -[ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -[ 41%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -MF CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d -o CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_print_array_schema.cc [ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -MF CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d -o CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -MF CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d -o CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -MF CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d -o CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc -[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -MF CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d -o CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_dense_array_api.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 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-MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -MF CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o.d -o CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_sparse_array_benchmark.cc +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o +[ 42%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o +[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/expressions/test_expressions.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -MF CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d -o CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/array/test_array_schema.cc +[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o +[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -MF CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d -o CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_tiledb_utils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -MF CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o.d -o CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/c_api/test_sparse_array_api.cc -[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/codec/test_codec.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -MF CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o.d -o CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/benchmark/test_print_book_keeping.cc +[ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o [ 43%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o [ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -[ 44%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -MF CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d -o CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/codec/test_codec_filter.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -MF CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d -o CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_mem_utils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -MF CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d -o CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/expressions/test_filter_api.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -MF CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d -o CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/expressions/test_expressions.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -MF CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d -o CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/codec/test_codec.cc make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" @@ -4289,10 +4325,10 @@ make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 45%] Linking CXX executable test_print_array_schema -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 -[ 46%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o +[ 45%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -MF CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d -o CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc +[ 46%] Linking CXX executable test_print_array_schema +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_array_schema.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" @@ -4309,6 +4345,11 @@ make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/c++ -DCATCH2_MAJOR_VERSION=3 -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_TEST_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test\" -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/catch2 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/array -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/c_api -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/codec -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/expressions -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/fragment -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/metadata -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/misc -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/../core/include/storage -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -MF CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d -o CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/storage_manager/test_storage_buffer.cc +[ 47%] Linking CXX executable test_print_book_keeping +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_array_schema.dir/link.d CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 47%] Built target test_print_array_schema make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" @@ -4317,49 +4358,47 @@ make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -MF CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d -o CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_3d.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_array_schema.dir/link.d CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o -o test_print_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/DependInfo.cmake "--color=" -[ 47%] Built target test_print_array_schema make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_book_keeping.dir/link.d CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 47%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -MF CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_aio_read_dense.cc +[ 47%] Built target test_print_book_keeping +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -MF CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d -o CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_aio_write_dense.cc -[ 48%] Linking CXX executable test_print_book_keeping -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_print_book_keeping.dir/link.txt --verbose=1 -[ 49%] Linking CXX executable tiledb_array_3d -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_3d.dir/link.txt --verbose=1 -[ 49%] Linking CXX executable tiledb_array_aio_read_dense -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_read_dense.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 49%] Linking CXX executable tiledb_array_aio_write_dense -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_write_dense.dir/link.txt --verbose=1 -[ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o +[ 48%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -MF CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d -o CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_consolidate.cc +[ 48%] Linking CXX executable tiledb_array_aio_read_dense +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_read_dense.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 49%] Linking CXX executable tiledb_array_3d +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_3d.dir/link.txt --verbose=1 [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -MF CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d -o CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_create_dense.cc +[ 49%] Linking CXX executable tiledb_array_aio_write_dense +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_aio_write_dense.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/DependInfo.cmake "--color=" @@ -4368,654 +4407,668 @@ make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -MF CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d -o CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_create_sparse.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_print_book_keeping.dir/link.d CMakeFiles/test_print_book_keeping.dir/src/benchmark/test_print_book_keeping.cc.o -o test_print_book_keeping ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 49%] Built target test_print_book_keeping make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/DependInfo.cmake "--color=" +[ 50%] Linking CXX executable tiledb_array_consolidate +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_consolidate.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 49%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o +[ 50%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -MF CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o.d -o CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_dense.cc -[ 50%] Linking CXX executable tiledb_array_consolidate -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_consolidate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_read_dense.dir/link.d CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o -o tiledb_array_aio_read_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 50%] Linking CXX executable tiledb_array_create_dense -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_write_dense.dir/link.d CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx [ 50%] Built target tiledb_array_aio_read_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 51%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse.cc +[ 52%] Linking CXX executable tiledb_array_create_sparse +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 +[ 52%] Linking CXX executable tiledb_array_iterator_dense +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 +[ 52%] Linking CXX executable tiledb_array_create_dense +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_dense.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_3d.dir/link.d CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -o tiledb_array_3d ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 52%] Built target tiledb_array_3d make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 51%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -[ 51%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o +[ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse_filter.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -MF CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d -o CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_iterator_sparse.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_3d.dir/link.d CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o -o tiledb_array_3d ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_aio_write_dense.dir/link.d CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o -o tiledb_array_aio_write_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 51%] Built target tiledb_array_3d -[ 51%] Built target tiledb_array_aio_write_dense +[ 52%] Built target tiledb_array_aio_write_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_consolidate.dir/link.d CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make 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genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_sparse.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" [ 52%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_consolidate_dense.cc -[ 53%] Linking CXX executable tiledb_array_create_sparse -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_create_sparse.dir/link.txt --verbose=1 -[ 53%] Linking CXX executable test_mem_utils -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mem_utils.dir/link.txt --verbose=1 -[ 53%] Linking CXX executable tiledb_array_iterator_dense -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_dense.dir/link.txt --verbose=1 -[ 54%] Linking CXX executable tiledb_array_iterator_sparse_filter -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.txt --verbose=1 -[ 54%] Linking CXX executable tiledb_array_iterator_sparse -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_consolidate.dir/link.d CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o -o tiledb_array_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_mem_utils.dir/link.d CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 54%] Built target test_mem_utils +[ 52%] Built target tiledb_array_consolidate make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 54%] Built target tiledb_array_consolidate -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_dense.dir/link.d CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_2.cc -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -MF 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genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 53%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT 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/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" +[ 54%] Linking CXX executable tiledb_array_iterator_sparse_filter +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_mpi_io_dense.cc +[ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_dense_2.cc [ 55%] Linking CXX executable tiledb_array_parallel_consolidate_dense cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.txt --verbose=1 -In file included from /usr/include/c++/15/bits/basic_string.h:51, - from /usr/include/c++/15/string:56: -In function 'constexpr std::size_t std::__sv_check(size_t, size_t, const char*)', - inlined from 'constexpr std::basic_string_view<_CharT, _Traits> std::basic_string_view<_CharT, _Traits>::substr(size_type, size_type) const [with _CharT = char; _Traits = std::char_traits]' at /usr/include/c++/15/string_view:340:25, - inlined from 'std::string_view get_segment(std::string_view, int)' at /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:819:20: -/usr/include/c++/15/string_view:74:5: warning: 'pos' may be used uninitialized [-Wmaybe-uninitialized] - 74 | if (__pos > __size) - | ^~ -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc: In function 'std::string_view get_segment(std::string_view, int)': -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:806:26: note: 'pos' was declared here - 806 | std::string::size_type pos; - | ^~~ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_sparse.dir/link.d CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o -o tiledb_array_create_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 55%] Built target tiledb_array_create_sparse -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" +[ 55%] Linking CXX executable tiledb_array_parallel_read_dense_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_create_dense.dir/link.d CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o -o tiledb_array_create_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_1.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_dense.dir/link.d 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'/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 55%] Built target tiledb_array_iterator_dense +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build +[ 55%] Built target tiledb_array_create_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -MF CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_mpi_io_dense.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 55%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_1.cc [ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o +[ 56%] Linking CXX executable test_array_schema cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_read_sparse_2.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -o tiledb_array_iterator_sparse_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 +[ 56%] Linking CXX executable tiledb_array_parallel_consolidate_sparse +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.txt --verbose=1 +[ 56%] Linking CXX executable test_mem_utils +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_dense.dir/link.d CMakeFiles/tiledb_array_iterator_dense.dir/src/tiledb_array_iterator_dense.cc.o -o tiledb_array_iterator_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 56%] Built target tiledb_array_iterator_sparse_filter +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mem_utils.dir/link.txt --verbose=1 +[ 56%] Built target tiledb_array_iterator_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse.dir/link.d CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -o tiledb_array_iterator_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 56%] Linking CXX executable tiledb_array_parallel_read_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_1.cc [ 56%] Linking CXX executable tiledb_array_parallel_read_dense_1 -[ 57%] Linking CXX executable tiledb_array_parallel_read_mpi_io_dense cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.txt --verbose=1 -[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_1.cc -[ 57%] Built target tiledb_array_iterator_sparse +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o -o tiledb_array_iterator_sparse_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 56%] Built target tiledb_array_iterator_sparse_filter make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_dense_2.cc +[ 56%] Linking CXX executable tiledb_array_parallel_read_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 +[ 56%] Linking CXX executable tiledb_array_parallel_read_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_iterator_sparse.dir/link.d CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o -o tiledb_array_iterator_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 57%] Built target tiledb_array_parallel_consolidate_sparse +[ 56%] Built target tiledb_array_iterator_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o -o tiledb_array_parallel_consolidate_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 56%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc +[ 57%] Linking CXX executable tiledb_array_parallel_read_mpi_io_dense +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_mem_utils.dir/link.d CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o -o test_mem_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 57%] Built target test_mem_utils +[ 57%] Built target tiledb_array_parallel_read_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" -[ 57%] Built target tiledb_array_parallel_consolidate_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o -o tiledb_array_parallel_consolidate_sparse ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_1.cc [ 57%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_parallel_write_sparse_2.cc -[ 57%] Built target tiledb_array_parallel_read_mpi_io_dense +[ 57%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" [ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -MF CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d -o CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_primitive.cc -[ 58%] Linking CXX executable test_array_schema -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -MF CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d -o CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_1.cc -[ 58%] Linking CXX executable tiledb_array_parallel_read_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o -o tiledb_array_parallel_read_mpi_io_dense ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 58%] Built target tiledb_array_parallel_read_mpi_io_dense make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" -[ 59%] Linking CXX executable test_codec -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o +[ 58%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -MF 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/usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 58%] Built target tiledb_array_parallel_consolidate_dense +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 59%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d -o CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_3.cc [ 60%] Linking CXX executable tiledb_array_parallel_write_dense_1 -[ 60%] Linking CXX executable tiledb_array_parallel_read_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.txt --verbose=1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.txt --verbose=1 -[ 60%] Linking CXX executable tiledb_array_parallel_write_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o -o tiledb_array_parallel_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o -o tiledb_array_parallel_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 60%] Built target tiledb_array_parallel_read_dense_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend [ 60%] Built target tiledb_array_parallel_read_dense_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" -[ 61%] Linking CXX executable tiledb_array_parallel_write_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 +[ 60%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_sorted.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema.dir/link.d CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 60%] Linking CXX executable tiledb_array_parallel_write_dense_2 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -o tiledb_array_parallel_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 60%] Built target test_array_schema make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" -[ 61%] Linking CXX executable tiledb_array_parallel_write_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 61%] Linking CXX executable tiledb_array_primitive -[ 61%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_1.cc -[ 62%] Linking CXX executable tiledb_array_read_dense_1 +[ 61%] Linking CXX executable tiledb_array_read_dense_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_1.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -MF CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d -o CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_3.cc -[ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_dense_sorted.cc -[ 63%] Linking CXX executable test_codec_filter -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 -[ 63%] Linking CXX executable tiledb_array_read_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema.dir/link.d CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o -o test_array_schema ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 63%] Built target test_array_schema +[ 62%] Linking CXX executable tiledb_array_parallel_write_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.txt --verbose=1 +[ 62%] Linking CXX executable tiledb_array_parallel_write_sparse_2 +[ 62%] Built target tiledb_array_parallel_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o -o tiledb_array_parallel_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -[ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec.dir/link.d CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +[ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_1.cc +[ 62%] Linking CXX executable tiledb_array_primitive +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_primitive.dir/link.txt --verbose=1 +[ 62%] Built target tiledb_array_parallel_read_sparse_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 63%] Built target test_codec -[ 63%] Built target tiledb_array_parallel_read_sparse_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec_filter.dir/link.d CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_2.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" +[ 62%] Linking CXX executable tiledb_array_read_dense_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_2.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 63%] Built target test_codec_filter -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" -[ 63%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o +[ 62%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_1.cc +[ 62%] Linking CXX executable tiledb_array_read_dense_3 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 63%] Linking CXX executable test_codec +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build +[ 63%] Built target tiledb_array_parallel_write_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -MF CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_filter_2.cc -[ 64%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o [ 65%] Linking CXX executable tiledb_array_read_dense_sorted -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -MF CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_sorted.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_sorted.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o -o tiledb_array_parallel_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 65%] Linking CXX executable tiledb_array_read_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o -o tiledb_array_parallel_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 65%] Built target tiledb_array_parallel_write_sparse_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 65%] Built target tiledb_array_parallel_write_dense_1 -[ 65%] Linking CXX executable tiledb_array_read_dense_3 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_dense_3.dir/link.txt --verbose=1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" +[ 66%] Linking CXX executable tiledb_array_read_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 +[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -MF CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d -o CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_read_sparse_sorted.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o -o tiledb_array_parallel_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 65%] Built target tiledb_array_parallel_read_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend +[ 66%] Built target tiledb_array_parallel_write_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" +[ 66%] Linking CXX executable tiledb_array_read_sparse_filter_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build -[ 65%] Built target tiledb_array_parallel_write_dense_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend +[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -MF CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d -o CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_1.cc +[ 66%] Linking CXX executable tiledb_array_read_sparse_filter_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_2.dir/link.d CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_1.dir/link.d CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec.dir/link.d CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o -o test_codec ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_primitive.dir/link.d CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" +[ 66%] Linking CXX executable test_codec_filter +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_codec_filter.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build +[ 66%] Built target tiledb_array_read_dense_2 +[ 66%] Built target test_codec make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 66%] Built target tiledb_array_read_dense_1 +[ 66%] Built target tiledb_array_primitive +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend +[ 67%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" -[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -MF CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d -o CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_2.cc -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build -[ 66%] Linking CXX executable tiledb_array_read_sparse_1 -[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_1.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -MF CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d -o CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_dense_1.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 66%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -MF CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc -[ 67%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT 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/usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 67%] Built target tiledb_array_parallel_write_sparse_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" -[ 67%] Linking CXX executable test_filter_api -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_filter_api.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 67%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_1.cc -[ 68%] Linking CXX executable tiledb_array_read_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_1.dir/link.d CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o -o tiledb_array_read_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_2.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 68%] Built target tiledb_array_read_dense_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_2.dir/link.d CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o -o tiledb_array_read_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o +[ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -MF CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d -o 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CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_1.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -MF CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_update_sparse_2.cc [ 68%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -MF CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d -o CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_2.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" -[ 68%] Built target tiledb_array_read_dense_2 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o -o tiledb_array_parallel_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 68%] Built target tiledb_array_read_dense_sorted +[ 68%] Built target tiledb_array_parallel_write_sparse_1 +In file included from /usr/include/c++/15/bits/basic_string.h:51, + from /usr/include/c++/15/string:56: +In function 'constexpr std::size_t std::__sv_check(size_t, size_t, const char*)', + inlined from 'constexpr std::basic_string_view<_CharT, _Traits> std::basic_string_view<_CharT, _Traits>::substr(size_type, size_type) const [with _CharT = char; _Traits = std::char_traits]' at /usr/include/c++/15/string_view:340:25, + inlined from 'std::string_view get_segment(std::string_view, int)' at /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:819:20: +/usr/include/c++/15/string_view:74:5: warning: 'pos' may be used uninitialized [-Wmaybe-uninitialized] + 74 | if (__pos > __size) + | ^~ +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc: In function 'std::string_view get_segment(std::string_view, int)': +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/src/api/genomicsdb.cc:806:26: note: 'pos' was declared here + 806 | std::string::size_type pos; + | ^~~ +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" -[ 68%] Linking CXX executable tiledb_array_read_sparse_filter_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -o tiledb_array_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_3.dir/link.d CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build -[ 68%] Linking CXX executable tiledb_array_read_sparse_filter_1 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_codec_filter.dir/link.d CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o -o test_codec_filter ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 69%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o -o tiledb_array_parallel_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -[ 70%] Linking CXX executable tiledb_array_read_sparse_sorted make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 69%] Linking CXX executable tiledb_array_read_sparse_sorted +[ 69%] Built target tiledb_array_read_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.txt --verbose=1 -[ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -[ 70%] Built target tiledb_array_parallel_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_primitive.dir/link.d CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o -o tiledb_array_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o +[ 70%] Built target tiledb_array_read_dense_3 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -MF CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d -o CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_dense_sorted.cc +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" +[ 70%] Built target test_codec_filter +[ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -MF CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_1.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 70%] Built target tiledb_array_primitive -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -MF CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_2.cc -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 70%] Linking CXX executable tiledb_array_update_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" +[ 70%] Linking CXX executable tiledb_array_update_dense_1 [ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -MF CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_3.cc -[ 70%] Linking CXX executable tiledb_array_update_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_3.dir/link.d CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o -o tiledb_array_read_dense_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o -o tiledb_array_read_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 +[ 70%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -MF CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_4.cc +[ 70%] Linking CXX executable tiledb_array_update_dense_2 [ 70%] Linking CXX executable tiledb_array_update_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_2.dir/link.txt --verbose=1 -[ 70%] Linking CXX executable tiledb_array_update_dense_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_2.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_dense_1.dir/link.txt --verbose=1 -[ 70%] Built target tiledb_array_read_dense_3 -[ 70%] Built target tiledb_array_read_dense_sorted -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend +[ 71%] Linking CXX executable tiledb_array_write_dense_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 +[ 71%] Linking CXX executable tiledb_array_write_dense_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 +[ 71%] Linking CXX executable tiledb_array_update_sparse_1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_update_sparse_1.dir/link.txt --verbose=1 +[ 71%] Built target tiledb_array_read_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o -o tiledb_array_read_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o +[ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -MF CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d -o CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_catching_errors.cc -[ 71%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -MF CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d -o CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_array_write_sparse_4.cc -[ 71%] Built target tiledb_array_read_sparse_1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 72%] Built target tiledb_array_read_sparse_filter_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -[ 72%] Linking CXX executable tiledb_array_write_dense_1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_1.dir/link.txt --verbose=1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -MF CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d -o CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_clear_delete_move.cc -[ 72%] Linking CXX executable tiledb_array_write_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_2.dir/link.txt --verbose=1 [ 72%] Linking CXX executable tiledb_array_write_dense_sorted +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_dense_sorted.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o -o tiledb_array_read_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_filter_api.dir/link.d CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -o test_filter_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 72%] Linking CXX executable tiledb_catching_errors -[ 72%] Linking CXX executable tiledb_array_write_sparse_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 -[ 73%] Linking CXX executable tiledb_array_write_sparse_3 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 -[ 74%] Linking CXX executable tiledb_array_write_sparse_1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o -o tiledb_array_read_sparse_filter_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o -o tiledb_array_read_sparse_filter_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 74%] Built target tiledb_array_read_sparse_filter_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend -[ 74%] Linking CXX executable tiledb_array_write_sparse_4 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 -[ 74%] Built target tiledb_array_read_sparse_filter_2 +[ 72%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_config.cc +[ 72%] Built target tiledb_array_read_sparse_filter_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend -[ 74%] Built target tiledb_array_read_sparse_2 -[ 74%] Built target test_filter_api -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 72%] Linking CXX executable tiledb_array_write_sparse_4 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_4.dir/link.txt --verbose=1 +[ 73%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -MF CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d -o CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_delete.cc +[ 73%] Linking CXX executable test_filter_api +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_filter_api.dir/link.txt --verbose=1 +[ 74%] Linking CXX executable tiledb_array_write_sparse_3 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_3.dir/link.txt --verbose=1 +[ 74%] Linking CXX executable tiledb_array_write_sparse_2 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o -o tiledb_array_read_sparse_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_1.dir/link.d CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_2.dir/link.d CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -o tiledb_array_update_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 74%] Built target tiledb_array_update_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend +[ 75%] Linking CXX executable tiledb_array_write_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_2.dir/link.d CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -o tiledb_array_update_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" +[ 75%] Built target tiledb_array_read_sparse_sorted +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_array_write_sparse_1.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_1.dir/link.d CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o -o tiledb_array_update_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_ls.cc +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" +[ 76%] Linking CXX executable tiledb_clear_delete_move make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_clear_delete_move.dir/link.txt --verbose=1 +[ 76%] Linking CXX executable tiledb_config +[ 76%] Linking CXX executable tiledb_catching_errors make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_1.dir/link.d CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -MF CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d -o CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_config.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_catching_errors.dir/link.txt --verbose=1 +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 +[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -MF CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d -o CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_ls_workspaces.cc -[ 74%] Built target tiledb_array_read_sparse_sorted +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_2.dir/link.d CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o -o tiledb_array_update_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 76%] Built target tiledb_array_update_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend -[ 74%] Built target tiledb_array_update_sparse_2 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_sparse_1.dir/link.d CMakeFiles/tiledb_array_update_sparse_1.dir/src/tiledb_array_update_sparse_1.cc.o -o tiledb_array_update_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_2.dir/link.d CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -o tiledb_array_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_update_dense_2.dir/link.d CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o -o tiledb_array_update_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 76%] Built target tiledb_array_update_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend -[ 74%] Built target tiledb_array_update_dense_1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" -[ 74%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o +[ 76%] Built target tiledb_array_update_dense_2 +[ 76%] Built target tiledb_array_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -MF CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d -o CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_ls.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" -[ 75%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -[ 75%] Built target tiledb_array_update_dense_2 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -MF CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d -o CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_delete.cc make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend -[ 75%] Built target tiledb_array_update_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build +[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -MF CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d -o CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_consolidate.cc make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -MF CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d -o CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_create.cc make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -MF CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d -o CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_iterator.cc +[ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -MF CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d -o CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_primitive.cc +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_1.dir/link.d CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o -o tiledb_array_write_dense_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 77%] Built target tiledb_array_write_dense_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend +[ 77%] Linking CXX executable test_uri +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_uri.dir/link.txt --verbose=1 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_3.dir/link.d CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 77%] Built target tiledb_array_write_dense_1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 77%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -MF CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d -o CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_read.cc +[ 77%] Linking CXX executable tiledb_delete +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_delete.dir/link.txt --verbose=1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build +[ 77%] Built target tiledb_array_write_sparse_3 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -[ 78%] Linking CXX executable tiledb_clear_delete_move -[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -[ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -[ 76%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -[ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -MF CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d -o CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -c 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/usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_2.dir/link.d CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o -o tiledb_array_write_dense_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 78%] Built target tiledb_array_write_dense_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o -o tiledb_array_write_dense_sorted ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so 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-make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -o tiledb_array_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -o tiledb_array_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_3.dir/link.d CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o -o tiledb_array_write_sparse_3 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 78%] Built target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_4.dir/link.d CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" +[ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -MF CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d -o CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_update.cc +[ 78%] Built target tiledb_array_write_sparse_4 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build -[ 78%] Linking CXX executable test_uri make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 78%] Linking CXX executable tiledb_ls_workspaces -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_uri.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 -[ 78%] Linking CXX executable tiledb_metadata_create -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_create.dir/link.txt --verbose=1 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 78%] Linking CXX executable tiledb_config -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_config.dir/link.txt --verbose=1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_2.dir/link.d CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o -o tiledb_array_write_sparse_2 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc [ 78%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o +[ 78%] Built target tiledb_array_write_sparse_2 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -MF CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d -o CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_workspace_group_create.cc -[ 78%] Linking CXX executable tiledb_metadata_update -[ 78%] Linking CXX executable tiledb_metadata_read +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_uri.dir/link.d CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 78%] Built target test_uri +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_filter_api.dir/link.d CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o -o test_filter_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 78%] Built target test_filter_api +[ 78%] Linking CXX executable tiledb_ls_workspaces +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls_workspaces.dir/link.txt --verbose=1 +[ 78%] Linking CXX executable tiledb_metadata_iterator +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 [ 79%] Linking CXX executable tiledb_ls -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_update.dir/link.txt --verbose=1 -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_read.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_clear_delete_move.dir/link.d CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_ls.dir/link.txt --verbose=1 -[ 80%] Linking CXX executable tiledb_metadata_consolidate -[ 80%] Building CXX object genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 80%] Linking CXX executable tiledb_metadata_primitive +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_config.dir/link.d CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -o tiledb_config ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 80%] Built target tiledb_clear_delete_move +[ 80%] Linking CXX executable tiledb_metadata_create +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_create.dir/link.txt --verbose=1 +[ 80%] Built target tiledb_config +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_1.dir/link.d CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o -o tiledb_array_write_sparse_1 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_catching_errors.dir/link.d CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o -o tiledb_catching_errors ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 81%] Linking CXX executable tiledb_metadata_consolidate +[ 81%] Built target tiledb_array_write_sparse_1 cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_consolidate.dir/link.txt --verbose=1 -[ 80%] Linking CXX executable tiledb_metadata_iterator -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/c++ -DENABLE_ZSTD -DHAVE_OPENMP -DTILEDB_VERBOSE -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/usr/include/muparserx -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/../core/include/c_api -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -std=c++17 -MD -MT genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -MF CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d -o CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples/src/tiledb_metadata_write.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_iterator.dir/link.txt --verbose=1 +[ 81%] Built target tiledb_catching_errors In file included from /usr/include/string.h:548, from /usr/include/c++/15/cstring:48, from /usr/include/catch2/internal/catch_stringref.hpp:16, @@ -5091,21 +5144,38 @@ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/src/misc/test_utils.cc:181:19: note: source object 'k' of size 8 181 | double j = 0.1, k = 0.2; | ^ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_array_write_sparse_4.dir/link.d CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o -o tiledb_array_write_sparse_4 ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 81%] Linking CXX executable tiledb_metadata_read +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_read.dir/link.txt --verbose=1 +[ 81%] Linking CXX executable tiledb_metadata_update +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_update.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls.dir/link.d CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -o tiledb_ls ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 80%] Built target tiledb_array_write_sparse_4 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_clear_delete_move.dir/link.d CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o -o tiledb_clear_delete_move ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +[ 81%] Linking CXX executable tiledb_metadata_write +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 +[ 81%] Built target tiledb_ls +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls_workspaces.dir/link.d CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 80%] Built target tiledb_catching_errors -[ 80%] Built target tiledb_clear_delete_move -[ 80%] Built target tiledb_array_write_sparse_1 -[ 80%] Built target tiledb_array_write_dense_sorted -[ 80%] Built target tiledb_array_write_dense_1 -[ 80%] Built target tiledb_array_write_sparse_3 -[ 81%] Linking CXX executable tiledb_metadata_primitive -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_primitive.dir/link.txt --verbose=1 -[ 81%] Linking CXX executable tiledb_delete -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_delete.dir/link.txt --verbose=1 +[ 81%] Built target tiledb_ls_workspaces +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_delete.dir/link.d CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_iterator.dir/link.d CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -o tiledb_metadata_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_delete +[ 82%] Built target tiledb_metadata_iterator +[ 82%] Linking CXX executable tiledb_workspace_group_create +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_workspace_group_create.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_primitive.dir/link.d CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -o tiledb_metadata_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_primitive +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_create.dir/link.d CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -o tiledb_metadata_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_consolidate.dir/link.d CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -o tiledb_metadata_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_create +[ 82%] Built target tiledb_metadata_consolidate +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_read.dir/link.d CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 82%] Built target tiledb_metadata_read In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -5130,43 +5200,9 @@ /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test/include/benchmark/tiledb_benchmark.h:483:13: note: declared here 483 | std::string readable_size(size_t size, bool human_readable_sizes) { | ^~~~~~~~~~~~~ -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_uri.dir/link.d CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o -o test_uri ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 81%] Built target test_uri -[ 82%] Linking CXX executable tiledb_workspace_group_create -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_workspace_group_create.dir/link.txt --verbose=1 -[ 82%] Linking CXX executable tiledb_metadata_write -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledb_metadata_write.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls_workspaces.dir/link.d CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o -o tiledb_ls_workspaces ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_config.dir/link.d CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o -o tiledb_config ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_create.dir/link.d CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o -o tiledb_metadata_create ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_update.dir/link.d CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o -o tiledb_metadata_update ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 82%] Built target tiledb_ls_workspaces -[ 82%] Built target tiledb_config -[ 82%] Built target tiledb_metadata_create [ 82%] Built target tiledb_metadata_update -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_delete.dir/link.d CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o -o tiledb_delete ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 82%] Built target tiledb_delete -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_ls.dir/link.d CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o -o tiledb_ls ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_iterator.dir/link.d CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o -o tiledb_metadata_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_consolidate.dir/link.d CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o -o tiledb_metadata_consolidate ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 82%] Built target tiledb_ls -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_read.dir/link.d CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o -o tiledb_metadata_read ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 82%] Built target tiledb_metadata_iterator -[ 82%] Built target tiledb_metadata_consolidate -[ 82%] Built target tiledb_metadata_read -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_primitive.dir/link.d CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o -o tiledb_metadata_primitive ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 82%] Built target tiledb_metadata_primitive /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tiledb_metadata_write.dir/link.d CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o -o tiledb_metadata_write ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 82%] Built target tiledb_metadata_write @@ -5178,37 +5214,37 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_iterator.dir/link.d CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o -o test_array_iterator ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 83%] Built target test_array_iterator -[ 83%] Linking CXX executable test_array_schema_api -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 +[ 83%] Linking CXX executable test_storage_buffer +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 [ 84%] Linking CXX executable test_sparse_array_benchmark cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_benchmark.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema_api.dir/link.d CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -o test_array_schema_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 84%] Built target test_array_schema_api +[ 84%] Linking CXX executable test_array_schema_api +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_array_schema_api.dir/link.txt --verbose=1 [ 85%] Linking CXX executable test_dense_array_api +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_storage_buffer.dir/link.d CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_dense_array_api.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_benchmark.dir/link.d CMakeFiles/test_sparse_array_benchmark.dir/src/benchmark/test_sparse_array_benchmark.cc.o -o test_sparse_array_benchmark ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 85%] Linking CXX executable test_storage_buffer -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_storage_buffer.dir/link.txt --verbose=1 +[ 85%] Built target test_storage_buffer [ 85%] Built target test_sparse_array_benchmark -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_dense_array_api.dir/link.d CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 85%] Built target test_dense_array_api [ 85%] Linking CXX executable test_utils cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_utils.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_storage_buffer.dir/link.d CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o -o test_storage_buffer ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_array_schema_api.dir/link.d CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o -o test_array_schema_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 85%] Built target test_storage_buffer [ 86%] Linking CXX executable test_tiledb_utils cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tiledb_utils.dir/link.txt --verbose=1 +[ 86%] Built target test_array_schema_api +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_dense_array_api.dir/link.d CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o -o test_dense_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 86%] Built target test_dense_array_api /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_utils.dir/link.d CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o -o test_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 86%] Built target test_utils /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_tiledb_utils.dir/link.d CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o -o test_tiledb_utils ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 86%] Built target test_tiledb_utils make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 86%] Built target test_tiledb_utils [ 86%] Built target GenomicsDB_library_object_files make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend @@ -5217,22 +5253,17 @@ make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build +make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 86%] Linking CXX static library libgenomicsdb.a [ 86%] Linking CXX shared library libgenomicsdb.so cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/tiledbgenomicsdb.dir/link.txt --verbose=1 -[ 86%] Linking CXX static library libgenomicsdb.a cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -P CMakeFiles/genomicsdb.dir/cmake_clean_target.cmake -[ 86%] Linking CXX executable test_posixfs -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/tiledbgenomicsdb.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared 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-I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBQuery.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBUtils.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBQueryStream.cc +[ 87%] Building CXX object src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -Dgenomicsdbjni_EXPORTS -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/src/main/jni/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIC -MD -MT src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -MF CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d -o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_jni_init.cc +[ 87%] Linking CXX executable test_posixfs +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_posixfs.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_posixfs.dir/link.d CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o -o test_posixfs ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 87%] Built target test_posixfs In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, @@ -5315,8 +5351,6 @@ /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -[ 87%] Linking CXX executable test_expressions -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc: In function 'jlong Java_org_genomicsdb_importer_GenomicsDBImporterJni_jniInitializeGenomicsDBImporterObject(JNIEnv*, jobject, jstring, jint)': /build/reproducible-path/genomicsdb-1.5.5/src/main/jni/src/genomicsdb_GenomicsDBImporter.cc:102:3: warning: control reaches end of non-void function [-Wreturn-type] 102 | } @@ -5331,145 +5365,148 @@ | ^ [ 87%] Linking CXX executable test_sparse_array_api cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sparse_array_api.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_expressions.dir/link.d CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 87%] Built target test_expressions /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_sparse_array_api.dir/link.d CMakeFiles/test_sparse_array_api.dir/src/c_api/test_sparse_array_api.cc.o -o test_sparse_array_api ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 87%] Built target test_sparse_array_api +[ 87%] Linking CXX executable test_expressions +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_expressions.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-literal-suffix -fopenmp -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_expressions.dir/link.d CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o -o test_expressions ../core/libgenomicsdb-tiledb.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libuuid.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so -ldl /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/libCatch2.a -lmuparserx +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 87%] Built target test_expressions _mapping.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o /usr/bin/ranlib libgenomicsdb.a make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 87%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend -make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend -make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend -make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend -make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" +make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend +make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend +make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" +make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" +make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 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tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build -make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/build +make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make 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'/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build +[ 87%] Building CXX object src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 87%] Building CXX object src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED 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-DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf 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-DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch 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-D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -MF CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc +[ 91%] Building CXX object tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o +[ 91%] Building CXX object tools/CMakeFiles/vcf2genomicsdb_init.dir/src/vcf2genomicsdb_init.cc.o +[ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o +[ 91%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED 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-I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -MF CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d -o CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc -[ 95%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o -MF CMakeFiles/ctests.dir/src/test_logger.cc.o.d -o CMakeFiles/ctests.dir/src/test_logger.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_logger.cc +[ 93%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o +[ 93%] Building CXX object tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o +[ 91%] Building CXX object tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o +[ 94%] Building CXX object tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations 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-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -MF CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o.d -o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_htslib_plugin.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb 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-I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -MF CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d -o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_mem_utils.cc +[ 94%] Building CXX object example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -MF CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d -o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_alleles_combiner.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o 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-I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -MF CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o.d -o CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -MF CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o.d -o CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_bgen.cc.o -MF CMakeFiles/ctests.dir/src/test_bgen.cc.o.d -o CMakeFiles/ctests.dir/src/test_bgen.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_bgen.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o -MF CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d -o CMakeFiles/ctests.dir/src/test_query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_query_variants.cc +[ 94%] Building CXX object src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -I/build/reproducible-path/genomicsdb-1.5.5/tools/include -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -MF CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d -o CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -MF CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o.d -o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_gt_remapper.cc +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o -MF CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d -o CMakeFiles/ctests.dir/src/test_query_variants.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_query_variants.cc +[ 95%] Building CXX object example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -MF CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d -o CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_CTESTS_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/\" -DGENOMICSDB_TESTS_SRC_DIR=\"/build/reproducible-path/genomicsdb-1.5.5/tests/\" -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DINCLUDE_TEST_BGEN=1 -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/INTERFACE -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/Catch2/single_include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -MF CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d -o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_mem_utils.cc -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DDUPLICATE_CELL_AT_END=1 -DFMT_SHARED -DGENOMICSDB_VERSION=\"1.5.4-SNAPSHOT-\" -DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64 -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb -I/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core/include/c_api -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/config -I/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/api -I/build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/include -I/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -std=c++17 -fPIE -MD -MT example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -MF CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d -o CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -c /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/tools/include/vcfdiff.h:31, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:25: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5482,37 +5519,15 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/tools/include/vcfdiff.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc:26: -/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] - 290 | : std::iterator - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, - from /usr/include/c++/15/string:49, - from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, - from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, - from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, - from /usr/include/catch2/catch_all.hpp:25, - from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/broad_combined_gvcf.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/genomicsdb_bcf_generator.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc:25: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc:30: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5524,8 +5539,7 @@ from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_bcf_generator.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5533,7 +5547,9 @@ from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc:30: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc:29: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5545,24 +5561,10 @@ from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/gt_mpi_gather.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc: In constructor 'VCFDiffFile::VCFDiffFile(const std::string&, const std::string&)': -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:83:41: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 83 | std::string field_name = std::move(std::string(bcf_hdr_int2id(m_hdr, BCF_DT_ID, i))); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:83:41: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc: In member function 'void VCFDiffFile::compare_line(const bcf_hdr_t*, bcf1_t*)': -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:591:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 591 | auto gold_ID_set = std::move(get_ID_set(gold_line)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:591:33: note: remove 'std::move' call -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:592:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] - 592 | auto test_ID_set = std::move(get_ID_set(m_line)); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:592:33: note: remove 'std::move' call In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, @@ -5583,9 +5585,9 @@ | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc:31: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc:27: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5595,15 +5597,16 @@ from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, - from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc:29: + from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_multid_vector_field.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc:27: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc:26: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5613,7 +5616,7 @@ from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, - from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_multid_vector.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_non_diploid_mapper.cc:24: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5621,33 +5624,27 @@ from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:26: + from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc:31: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/bits/hashtable_policy.h:36, - from /usr/include/c++/15/bits/hashtable.h:37, - from /usr/include/c++/15/bits/unordered_map.h:33, - from /usr/include/c++/15/unordered_map:43, - from /usr/include/c++/15/functional:65, - from /usr/include/spdlog/common.h:13, - from /usr/include/spdlog/spdlog.h:12, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/genomicsdb_logger.h:41, - from /build/reproducible-path/genomicsdb-1.5.5/tools/include/common.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:25: +In file included from /usr/include/c++/15/bits/stl_iterator_base_funcs.h:68, + from /usr/include/c++/15/string:49, + from /usr/include/catch2/interfaces/catch_interfaces_capture.hpp:11, + from /usr/include/catch2/benchmark/catch_benchmark.hpp:19, + from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, + from /usr/include/catch2/catch_all.hpp:25, + from /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/src/test_columnar_gvcf_iterator.cc:29: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc:24: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_field_data.h:29, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/query_operations/variant_operations.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/tools/include/vcfdiff.h:31, + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:25: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5660,8 +5657,7 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/vcf2binary.h:26, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc:23: + from /build/reproducible-path/genomicsdb-1.5.5/tools/include/vcfdiff.h:26: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5671,7 +5667,8 @@ from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc:29: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/genomicsdb_importer.h:25, + from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc:26: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5683,7 +5680,8 @@ from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, - from /build/reproducible-path/genomicsdb-1.5.5/tools/src/consolidate_genomicsdb_array.cc:26: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, + from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc:25: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ @@ -5693,8 +5691,31 @@ from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, - from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/genomicsdb_importer.h:25, - from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc:26: + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:26: +/build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] + 290 | : std::iterator + | ^~~~~~~~ +In file included from /usr/include/c++/15/bits/stl_algobase.h:65, + from /usr/include/c++/15/bits/hashtable_policy.h:36, + from /usr/include/c++/15/bits/hashtable.h:37, + from /usr/include/c++/15/bits/unordered_map.h:33, + from /usr/include/c++/15/unordered_map:43, + from /usr/include/c++/15/functional:65, + from /usr/include/spdlog/common.h:13, + from /usr/include/spdlog/spdlog.h:12, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/genomicsdb_logger.h:41, + from /build/reproducible-path/genomicsdb-1.5.5/tools/include/common.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:25: +/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here + 129 | struct _GLIBCXX17_DEPRECATED iterator + | ^~~~~~~~ +In file included from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_iterators.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_cell.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/variant_storage_manager.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/query_variants.h:28, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/load_operators.h:27, + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/loader/tiledb_loader.h:30, + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc:24: /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/genomicsdb/genomicsdb_columnar_field.h:290:10: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 290 | : std::iterator | ^~~~~~~~ @@ -5707,71 +5728,86 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/utils/headers.h:32, - from /build/reproducible-path/genomicsdb-1.5.5/example/src/test_genomicsdb_importer.cc:25: + from /build/reproducible-path/genomicsdb-1.5.5/src/main/cpp/include/vcf/vcf2binary.h:26, + from /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf_histogram.cc:23: /usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here 129 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc: In constructor 'VCFDiffFile::VCFDiffFile(const std::string&, const std::string&)': +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:83:41: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 83 | std::string field_name = std::move(std::string(bcf_hdr_int2id(m_hdr, BCF_DT_ID, i))); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:83:41: note: remove 'std::move' call +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc: In member function 'void VCFDiffFile::compare_line(const bcf_hdr_t*, bcf1_t*)': +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:591:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 591 | auto gold_ID_set = std::move(get_ID_set(gold_line)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:591:33: note: remove 'std::move' call +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:592:33: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] + 592 | auto test_ID_set = std::move(get_ID_set(m_line)); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/genomicsdb-1.5.5/tools/src/vcfdiff.cc:592:33: note: remove 'std::move' call /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc: In function 'int main(int, char**)': /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:165:45: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 165 | auto loader_json_config_file = std::move(std::string(argv[optind])); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/genomicsdb-1.5.5/tools/src/vcf2genomicsdb.cc:165:45: note: remove 'std::move' call +[ 95%] Linking CXX shared library libgenomicsdbjni.so +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/genomicsdbjni.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.5.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 95%] Built target genomicsdbjni [ 96%] Linking CXX executable test_genomicsdb_bcf_generator cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_bcf_generator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_bcf_generator.dir/link.d CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o -o test_genomicsdb_bcf_generator -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 96%] Linking CXX shared library libgenomicsdbjni.so [ 96%] Built target test_genomicsdb_bcf_generator -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main && /usr/bin/cmake -E cmake_link_script CMakeFiles/genomicsdbjni.dir/link.txt --verbose=1 [ 96%] Linking CXX executable gt_mpi_gather cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/gt_mpi_gather.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,--dependency-file=CMakeFiles/genomicsdbjni.dir/link.d -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -shared -Wl,-soname,libgenomicsdbjni.so -o libgenomicsdbjni.so CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBImporter.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/usr/lib/x86_64-linux-gnu/openmpi/lib:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib libgenomicsdb.so.1.5.4 ../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl ../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 96%] Built target genomicsdbjni /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/gt_mpi_gather.dir/link.d CMakeFiles/gt_mpi_gather.dir/src/gt_mpi_gather.cc.o -o gt_mpi_gather -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 96%] Built target gt_mpi_gather [ 96%] Linking CXX executable create_genomicsdb_workspace cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_genomicsdb_workspace.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/create_genomicsdb_workspace.dir/link.d CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 96%] Built target create_genomicsdb_workspace [ 97%] Linking CXX executable vcfdiff cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdiff.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable test_genomicsdb_demo -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_demo.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcfdiff.dir/link.d CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -o vcfdiff -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 97%] Built target vcfdiff -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_demo.dir/link.d CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -o test_genomicsdb_demo -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/create_genomicsdb_workspace.dir/link.d CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o -o create_genomicsdb_workspace -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 97%] Built target test_genomicsdb_demo -[ 97%] Linking CXX executable api_tests -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/api_tests.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable vcf_histogram -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 +[ 97%] Built target create_genomicsdb_workspace [ 98%] Linking CXX executable consolidate_genomicsdb_array cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/consolidate_genomicsdb_array.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/api_tests.dir/link.d CMakeFiles/api_tests.dir/src/ctest_main.cc.o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -o api_tests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E tar xzf /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/../inputs/test.tgz +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcfdiff.dir/link.d CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o -o vcfdiff -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 98%] Built target api_tests -[ 99%] Linking CXX executable vcf2genomicsdb -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb.dir/link.txt --verbose=1 +[ 98%] Built target vcfdiff +[ 98%] Linking CXX executable vcf_histogram +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf_histogram.dir/link.txt --verbose=1 +[ 98%] Linking CXX executable test_genomicsdb_demo +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_demo.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/consolidate_genomicsdb_array.dir/link.d CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 98%] Built target consolidate_genomicsdb_array /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf_histogram.dir/link.d CMakeFiles/vcf_histogram.dir/src/vcf_histogram.cc.o -o vcf_histogram -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 99%] Built target vcf_histogram -[ 99%] Linking CXX executable test_genomicsdb_importer +[ 98%] Built target vcf_histogram +[ 98%] Linking CXX executable test_genomicsdb_importer cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_genomicsdb_importer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/consolidate_genomicsdb_array.dir/link.d CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o -o consolidate_genomicsdb_array -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_demo.dir/link.d CMakeFiles/test_genomicsdb_demo.dir/src/test_genomicsdb_demo.cc.o -o test_genomicsdb_demo -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 99%] Built target consolidate_genomicsdb_array +[ 98%] Built target test_genomicsdb_demo +[ 99%] Linking CXX executable vcf2genomicsdb +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2genomicsdb.dir/link.txt --verbose=1 +[ 99%] Linking CXX executable api_tests +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/api_tests.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_importer.dir/link.d CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 99%] Built target test_genomicsdb_importer /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -pie -Wl,--dependency-file=CMakeFiles/vcf2genomicsdb.dir/link.d CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o -o vcf2genomicsdb -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' [ 99%] Built target vcf2genomicsdb -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/test_genomicsdb_importer.dir/link.d CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o -o test_genomicsdb_importer -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib: ../src/main/libgenomicsdb.a ../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/api_tests.dir/link.d CMakeFiles/api_tests.dir/src/ctest_main.cc.o CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o -o api_tests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E tar xzf /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp/../inputs/test.tgz make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 99%] Built target test_genomicsdb_importer +[ 99%] Built target api_tests [100%] Linking CXX executable ctests cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ctests.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/genomicsdb-1.5.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas -Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp -Wl,-z,relro -Wl,-z,now -z noexecstack -z relro -z now -Wl,--dependency-file=CMakeFiles/ctests.dir/link.d CMakeFiles/ctests.dir/src/ctest_main.cc.o CMakeFiles/ctests.dir/src/test_config.cc.o CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o CMakeFiles/ctests.dir/src/test_multid_vector.cc.o CMakeFiles/ctests.dir/src/test_pb.cc.o CMakeFiles/ctests.dir/src/test_logger.cc.o CMakeFiles/ctests.dir/src/test_columnar_gvcf_iterator.cc.o CMakeFiles/ctests.dir/src/test_htslib_plugin.cc.o CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o CMakeFiles/ctests.dir/src/test_gt_remapper.cc.o CMakeFiles/ctests.dir/src/test_bgen.cc.o CMakeFiles/ctests.dir/src/test_query_variants.cc.o CMakeFiles/ctests.dir/src/test_mem_utils.cc.o -o ctests -Wl,-rpath,/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core:/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib:/usr/lib/x86_64-linux-gnu/openmpi/lib ../../main/libgenomicsdb.a ../../../genomicsdb-tiledb/core/libgenomicsdb-tiledb.so ../../../genomicsdb-htslib/libgenomicsdb-hts.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libprotobuf.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl /usr/lib/x86_64-linux-gnu/libfmt.so.10.1.0 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libmuparserx.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/liblzma.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libuuid.so -ldl @@ -5968,18 +6004,18 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 7.659 s -[INFO] Finished at: 2025-10-30T22:43:09-12:00 +[INFO] Total time: 14.293 s +[INFO] Finished at: 2026-12-04T07:29:14+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' jh_build -O--buildsystem=cmake debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_test -a || true - cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu @@ -6122,7 +6158,7 @@ 22: Test command: /build/reproducible-path/genomicsdb-1.5.5/tests/test_tools.sh "/build/reproducible-path/genomicsdb-1.5.5/tests/inputs/vcfs" "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools" "1" 22: Working Directory: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools 22: Test timeout computed to be: 10000000 -1: Randomness seeded to: 2429247174 +1: Randomness seeded to: 577409892 1: [TileDB::ArraySchema] Error: Cannot set attributes; No attributes given. 1: [TileDB::ArraySchema] Error: Cannot set attributes; The number of attributes must be positive. 1: [TileDB::ArraySchema] Error: Cannot set attributes; Duplicate attribute names. @@ -6289,21 +6325,21 @@ 2: Usage: test_print_array_schema /path/to/TileDBArray 3: No arguments specified 3: Usage: test_print_book_keeping /path/to/TileDBArray/ -4: Randomness seeded to: 3573239133 +4: Randomness seeded to: 2194901903 4: =============================================================================== 4: test cases: 1 | 1 passed 4: assertions: - none - 4: -6: Randomness seeded to: 784891193 +6: Randomness seeded to: 4204533609 6: =============================================================================== 6: All tests passed (335 assertions in 13 test cases) 6: -9: Randomness seeded to: 65439533 -9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestFqX05S/WORKSPACE.nonexistent does not exist -9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestSyCVWs/WORKSPACE errno=2(No such file or directory) -9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTestSyCVWs/WORKSPACE errno=2(No such file or directory) -9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTestqJVbDE/WORKSPACE errno=2(No such file or directory) -10: Randomness seeded to: 4021317020 +9: Randomness seeded to: 3040064286 +9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestTx8i7e/WORKSPACE.nonexistent does not exist +9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTest3bNer2/WORKSPACE errno=2(No such file or directory) +9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTest3bNer2/WORKSPACE errno=2(No such file or directory) +9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTesthh0QQm/WORKSPACE errno=2(No such file or directory) +10: Randomness seeded to: 2475047018 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR 10: [TileDB::Codec] Error: Could not decompress with GZIP. 10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR @@ -6314,7 +6350,7 @@ 10: =============================================================================== 10: All tests passed (31 assertions in 5 test cases) 10: -11: Randomness seeded to: 1400445467 +11: Randomness seeded to: 2042493089 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. 11: [TileDB::CodecFilter] Error: virtual method should be overridden. @@ -6346,7 +6382,7 @@ 11: =============================================================================== 11: All tests passed (192 assertions in 2 test cases) 11: -12: Randomness seeded to: 2439974207 +12: Randomness seeded to: 10613773 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: 12: Index to variable "a1" is out of bounds. 12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression: @@ -6392,13 +6428,22 @@ 12: [TileDB::Expression] Error: (evaluate) Initialization not completed 12: [TileDB::Expression] Error: (evaluate_cell) Initialization not completed 12: [TileDB::Expression] Error: (evaluate_cell) Only expressions evaluating to booleans is supported -14: Randomness seeded to: 2805146446 -14: Thu Oct 30 22:43:10 2025 Memory stats Tracking memory usage START size=6MB resident=4MB share=3MB text=496KB lib=0 data=536KB dt=0 -15: Randomness seeded to: 2549943578 +12: [TileDB::Expression] Error: (init) Parser SetExpr error for expression 'resolve(a1) &= ""': Too few parameters passed to function "resolve". +12: [TileDB::Expression] Error: (init) Expression parsing for dense arrays not yet implemented +12: =============================================================================== +12: All tests passed (3334 assertions in 83 test cases) +12: +13: Randomness seeded to: 4028353670 +13: =============================================================================== +13: All tests passed (317 assertions in 3 test cases) +13: +14: Randomness seeded to: 2493503892 +14: Fri Dec 4 07:29:17 2026 Memory stats Tracking memory usage START size=6MB resident=4MB share=3MB text=496KB lib=0 data=536KB dt=0 +15: Randomness seeded to: 169881438 15: =============================================================================== 15: All tests passed (131 assertions in 2 test cases) 15: -16: Randomness seeded to: 807818648 +16: Randomness seeded to: 1447451594 16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; invalid input buffer format 16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; output buffer overflow 16: [TileDB::utils] Error: (RLE_compress_coords_row) Failed compressing coordinates with RLE; invalid buffer format @@ -6412,18 +6457,18 @@ 16: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/non-existent-dir/file errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=/non-existent-dir/dir errno=2(No such file or directory) 16: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=/non-existent-dir/old errno=2(No such file or directory) -17: Randomness seeded to: 1119110582 -17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestfXpQWN/test_posixfs_dirdir +17: Randomness seeded to: 2930959323 +17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestyyJOvE/test_posixfs_dirdir 17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/foo errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestfXpQWN/test_posixfs_dirdir errno=21(Is a directory) -17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestfXpQWN/test_posixfs_dirdir errno=21(Is a directory) +17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestyyJOvE/test_posixfs_dirdir errno=21(Is a directory) +17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestyyJOvE/test_posixfs_dirdir errno=21(Is a directory) 17: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-dir errno=2(No such file or directory) 17: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=non-existent-dir errno=2(No such file or directory) -18: Randomness seeded to: 957455563 -18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestwMBXQx/test-file -18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTestwMBXQx/test-file-non-existent errno=2(No such file or directory) -18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestwMBXQx/test-file -18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestwMBXQx/test-file +18: Randomness seeded to: 2572165586 +18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestYq1CVe/test-file +18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTestYq1CVe/test-file-non-existent errno=2(No such file or directory) +18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestYq1CVe/test-file +18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestYq1CVe/test-file 18: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied) 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied) @@ -6438,72 +6483,67 @@ 18: [TileDB::StorageBuffer] Error: (write_buffer) Compression type=1000 not supported in StorageBuffer 18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=2(No such file or directory) 18: [TileDB::StorageBuffer] Error: (read_buffer) Compression type=1000 for read_buffer not supported for CompressedStorageBuffer -18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestZLKnCv/compressed_foo - 1/22 Test #1: test_array_schema ................ Passed 0.04 sec - 2/22 Test #2: test_print_array_schema .......... Passed 0.03 sec - 3/22 Test #3: test_print_book_keeping .......... Passed 0.03 sec - 4/22 Test #4: test_sparse_array_benchmark ...... Passed 0.03 sec - 5/22 Test #6: test_array_schema_api ............ Passed 0.03 sec - 6/22 Test #10: test_codec ....................... Passed 0.02 sec - 7/22 Test #11: test_codec_filter ................ Passed 0.02 sec - 8/22 Test #15: test_uri ......................... Passed 0.01 sec -12: [TileDB::Expression] Error: (init) Parser SetExpr error for expression 'resolve(a1) &= ""': Too few parameters passed to function "resolve". -12: [TileDB::Expression] Error: (init) Expression parsing for dense arrays not yet implemented -12: =============================================================================== -12: All tests passed (3334 assertions in 83 test cases) -12: - 9/22 Test #12: test_expressions ................. Passed 0.02 sec +18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestWbcUOk/compressed_foo 19: Example 1: Running ./tiledb_workspace_group_create... -21: Randomness seeded to: 48342249 +19: Example 1: Done running ./tiledb_workspace_group_create + 1/22 Test #1: test_array_schema ................ Passed 0.35 sec + 2/22 Test #2: test_print_array_schema .......... Passed 0.39 sec + 3/22 Test #3: test_print_book_keeping .......... Passed 0.38 sec + 4/22 Test #4: test_sparse_array_benchmark ...... Passed 0.38 sec + 5/22 Test #6: test_array_schema_api ............ Passed 0.37 sec + 6/22 Test #10: test_codec ....................... Passed 0.29 sec + 7/22 Test #11: test_codec_filter ................ Passed 0.29 sec + 8/22 Test #12: test_expressions ................. Passed 0.28 sec + 9/22 Test #13: test_filter_api .................. Passed 0.24 sec +10/22 Test #15: test_uri ......................... Passed 0.23 sec +19: Example 2: Running ./tiledb_ls_workspaces... +19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) +19: Example 2: Done running ./tiledb_ls_workspaces +19: Example 3: Running ./tiledb_array_create_dense... +21: Randomness seeded to: 2662193243 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 22:43:10.720 ERROR NativeGenomicsDB - pid=60929 tid=60929 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container +21: 07:29:17.631 ERROR NativeGenomicsDB - pid=533318 tid=533318 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 22:43:10.720 ERROR NativeGenomicsDB - pid=60929 tid=60929 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container +21: 07:29:17.631 ERROR NativeGenomicsDB - pid=533318 tid=533318 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 22:43:10.720 ERROR NativeGenomicsDB - pid=60929 tid=60929 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container +21: 07:29:17.631 ERROR NativeGenomicsDB - pid=533318 tid=533318 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 22:43:10.720 ERROR NativeGenomicsDB - pid=60929 tid=60929 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container/ws +21: 07:29:17.631 ERROR NativeGenomicsDB - pid=533318 tid=533318 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container/ws 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 22:43:10.720 ERROR NativeGenomicsDB - pid=60929 tid=60929 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-ws +21: 07:29:17.631 ERROR NativeGenomicsDB - pid=533318 tid=533318 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-ws 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported 21: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-ws errno=2(No such file or directory) 21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 22:43:10.720 ERROR NativeGenomicsDB - pid=60929 tid=60929 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container/ws[TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-ws errno=2(No such file or directory) +21: 07:29:17.631 ERROR NativeGenomicsDB - pid=533318 tid=533318 [TileDB::StorageManagerConfig] Error: HDFS initialization failed for home=az://non-existent-container/ws[TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-ws errno=2(No such file or directory) 21: [TileDB::FileSystem] Error: TileDB built with HDFS support disabled.: Protocol not supported -19: Example 1: Done running ./tiledb_workspace_group_create -19: Example 2: Running ./tiledb_ls_workspaces... -19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) -19: Example 2: Done running ./tiledb_ls_workspaces -19: Example 3: Running ./tiledb_array_create_dense... -13: Randomness seeded to: 2613316247 -13: =============================================================================== -13: All tests passed (317 assertions in 3 test cases) -13: -10/22 Test #13: test_filter_api .................. Passed 0.05 sec 19: Example 3: Done running ./tiledb_array_create_dense 19: Example 4: Running ./tiledb_array_create_sparse... -19: Example 4: Done running ./tiledb_array_create_sparse -19: Example 5: Running ./tiledb_array_primitive... -20: 22:43:11.028 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:11.028 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:11.028 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: Randomness seeded to: 1755063630 -20: 0.126 s: Check loader configuration with json file -20: 22:43:11.029 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:11.029 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:11.029 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +17: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory) +20: 07:29:17.759 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:17.759 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:17.858 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +17: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory) +16: =============================================================================== +16: All tests passed (86 assertions in 6 test cases) +16: +20: Randomness seeded to: 2612958000 +20: 0.184 s: Check loader configuration with json file +20: 07:29:17.859 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:17.859 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:17.859 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.001 s: Check configuration with json file -20: 22:43:11.030 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:11.030 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:11.030 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +11/22 Test #16: test_utils ....................... Passed 0.53 sec +20: 07:29:17.860 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:17.860 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:17.861 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.001 s: Check configuration with json file and shared posifs optim -20: 22:43:11.031 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:11.031 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:11.031 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 07:29:17.861 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:17.861 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:17.862 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 20: 0.001 s: Compare configuration with json file and string 20: 0.000 s: genotype_ordering haploid_5_alleles 20: 0.000 s: genotype_ordering diploid_2_alleles @@ -6521,12 +6561,12 @@ 20: 0.000 s: multid_vector 2D_tuple_test 20: 0.000 s: pb_query_config_test 20: 0.001 s: pb_vid_mapping_test -20: 22:43:11.033 INFO NativeGenomicsDB - pid=60927 tid=60927 Contig/chromosome 2 begins at TileDB column 249250601 and intersects with contig/chromosome 1 that spans columns [0, 249250620] -20: 0.000 s: pb_overlapping_vid_mapping_test -20: 22:43:11.033 INFO NativeGenomicsDB - pid=60927 tid=60927 This is a test -20: 22:43:11.033 WARN NativeGenomicsDB - pid=60927 tid=60927 This is a test -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 This is a test -20: 22:43:11.033 DEBUG NativeGenomicsDB - pid=60927 tid=60927 This is a test +20: 07:29:17.865 INFO NativeGenomicsDB - pid=533300 tid=533300 Contig/chromosome 2 begins at TileDB column 249250601 and intersects with contig/chromosome 1 that spans columns [0, 249250620] +20: 0.001 s: pb_overlapping_vid_mapping_test +20: 07:29:17.865 INFO NativeGenomicsDB - pid=533300 tid=533300 This is a test +20: 07:29:17.865 WARN NativeGenomicsDB - pid=533300 tid=533300 This is a test +20: 07:29:17.865 ERROR NativeGenomicsDB - pid=533300 tid=533300 This is a test +20: 07:29:17.865 DEBUG NativeGenomicsDB - pid=533300 tid=533300 This is a test 20: This is a test 20: This is a test 20: This is a test @@ -6534,64 +6574,73 @@ 20: This is a once_only test 20: Trying format Hello1 Hello2 20: 0.000 s: test logger -20: 22:43:11.033 INFO NativeGenomicsDB - pid=60927 tid=60927 i=1 str=This is a test -20: 22:43:11.033 WARN NativeGenomicsDB - pid=60927 tid=60927 i=2 str=This is a test -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 i=3 str=This is a test -20: 22:43:11.033 DEBUG NativeGenomicsDB - pid=60927 tid=60927 i=4 str=This is a test -20: 22:43:11.033 INFO NativeGenomicsDB - pid=60927 tid=60927 i=6 str=This is a once_only test -20: 22:43:11.033 WARN NativeGenomicsDB - pid=60927 tid=60927 i=7 str=This is a once_only test +20: 07:29:17.866 INFO NativeGenomicsDB - pid=533300 tid=533300 i=1 str=This is a test +20: 07:29:17.866 WARN NativeGenomicsDB - pid=533300 tid=533300 i=2 str=This is a test +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 i=3 str=This is a test +20: 07:29:17.866 DEBUG NativeGenomicsDB - pid=533300 tid=533300 i=4 str=This is a test +20: 07:29:17.866 INFO NativeGenomicsDB - pid=533300 tid=533300 i=6 str=This is a once_only test +20: 07:29:17.866 WARN NativeGenomicsDB - pid=533300 tid=533300 i=7 str=This is a once_only test 20: 0.000 s: test logger format -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 i=1 str=This is a test -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 Test Exception -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 Test Exception -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 Test Exception -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 Native Stack Trace: -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x5617ab96afb2] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa4be6) [0x5617ab95bbe6] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x5617abb0f51c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x5617abb10018] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x5617abb1047a] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x5617abae3653] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x5617abae393c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x5617ab93159e] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fdacca33ca8] -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 Test Exception -20: 22:43:11.033 ERROR NativeGenomicsDB - pid=60927 tid=60927 Native Stack Trace: -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x5617ab96afb2] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa4c09) [0x5617ab95bc09] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x5617abb0f51c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x5617abb10018] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x5617abb1047a] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x5617abae3653] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x5617abae393c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x5617ab93159e] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fdacca33ca8] -20: 0.000 s: test logger exceptions -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x5617ab96afb2] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa7d3a) [0x5617ab95ed3a] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x5617abb0f51c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x5617abb10018] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x5617abb1047a] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x5617abae3653] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x5617abae393c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x5617ab93159e] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fdacca33ca8] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x5617ab96afb2] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa7d60) [0x5617ab95ed60] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x5617abb0f51c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x5617abb10018] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x5617abb1047a] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x5617abae3653] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x5617abae393c] -20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x5617ab93159e] -20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7fdacca33ca8] +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 i=1 str=This is a test +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 Test Exception +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 Test Exception +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 Test Exception +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 Native Stack Trace: +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x55a81d0a5fb2] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa4be6) [0x55a81d096be6] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x55a81d24a51c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x55a81d24b018] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x55a81d24b47a] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x55a81d21e653] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x55a81d21e93c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x55a81d06c59e] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8f03033ca8] +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 Test Exception +20: 07:29:17.866 ERROR NativeGenomicsDB - pid=533300 tid=533300 Native Stack Trace: +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x55a81d0a5fb2] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa4c09) [0x55a81d096c09] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x55a81d24a51c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x55a81d24b018] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x55a81d24b47a] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x55a81d21e653] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x55a81d21e93c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x55a81d06c59e] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8f03033ca8] +20: 0.001 s: test logger exceptions +19: Example 4: Done running ./tiledb_array_create_sparse +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x55a81d0a5fb2] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa7d3a) [0x55a81d099d3a] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x55a81d24a51c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x55a81d24b018] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x55a81d24b47a] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x55a81d21e653] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x55a81d21e93c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x55a81d06c59e] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8f03033ca8] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xb3fb2) [0x55a81d0a5fb2] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0xa7d60) [0x55a81d099d60] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25851c) [0x55a81d24a51c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x259018) [0x55a81d24b018] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x25947a) [0x55a81d24b47a] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c653) [0x55a81d21e653] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x22c93c) [0x55a81d21e93c] +20: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/ctests(+0x7a59e) [0x55a81d06c59e] +20: /lib/x86_64-linux-gnu/libc.so.6(+0x29ca8) [0x7f8f03033ca8] 20: This is a test -20: 0.000 s: test explicit logger -20: 22:43:11.034 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:11.034 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:11.034 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -17: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory) +20: 0.001 s: test explicit logger +20: 07:29:17.868 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:17.868 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:17.868 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +19: Example 5: Running ./tiledb_array_primitive... +21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. +21: 0.381 s: utils +21: 0.000 s: api empty_args +20: 0.034 s: gvcf iterator +20: 07:29:17.902 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:17.902 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:17.903 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestmjMJqm/test_file +9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestmjMJqm/test_file 19: Array name: my_workspace/dense_arrays/my_array_A 19: Attributes: a1 a2 a3 19: The array is dense @@ -6599,86 +6648,59 @@ 19: Attributes: a1 a2 a3 19: The array is sparse 19: Example 5: Done running ./tiledb_array_primitive -20: 0.070 s: gvcf iterator -20: 22:43:11.104 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:11.104 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:11.104 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 19: Example 6: Running ./tiledb_array_write_dense_1... -21: [TileDB::StorageManagerConfig] Error: TileDB built with HDFS support disabled.: Protocol not supported. -21: 0.586 s: utils -21: 0.000 s: api empty_args -16: =============================================================================== -16: All tests passed (86 assertions in 6 test cases) -16: -11/22 Test #16: test_utils ....................... Passed 0.61 sec -20: 0.209 s: columnar_gvcf_iterator_test -21: 0.019 s: api query_variants direct DP -21: 0.007 s: api query_variants direct DP with huge row range -21: 0.007 s: api query_variants direct DP with huge disjoint row ranges -21: 0.011 s: api query_variants direct DP with range composed of multiple points -21: 0.011 s: api query_variants direct DP with range composed of overlapping ranges -21: 22:43:11.367 ERROR NativeGenomicsDB - pid=60929 tid=60929 Query interval 0:-100-1 is out of bounds -21: 0.006 s: api query_variants direct DP with invalid row range -21: 0.015 s: api query_variants direct DP and GT -9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestG9gfWy/test_file -9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestG9gfWy/test_file -20: 22:43:11.435 ERROR NativeGenomicsDB - pid=60927 tid=60927 hts_plugin could not find /tmp/GenomicsDBJRab39 +21: 0.039 s: api query_variants direct DP +21: 0.024 s: api query_variants direct DP with huge row range +20: 0.081 s: columnar_gvcf_iterator_test +20: 07:29:17.983 ERROR NativeGenomicsDB - pid=533300 tid=533300 hts_plugin could not find /tmp/GenomicsDBKfrxYt 20: [TileDB] Error: No TileDB support for URL=dfdfd://ddd. -20: 22:43:11.435 ERROR NativeGenomicsDB - pid=60927 tid=60927 htslib_plugin could not open dfdfd://ddd +20: 07:29:17.983 ERROR NativeGenomicsDB - pid=533300 tid=533300 htslib_plugin could not open dfdfd://ddd 20: No TileDB support for URL=dfdfd://ddd -20: 22:43:11.435 ERROR NativeGenomicsDB - pid=60927 tid=60927 hts_plugin could not find /tmp/GenomicsDBJRab39/foo -20: 22:43:11.435 ERROR NativeGenomicsDB - pid=60927 tid=60927 hts_plugin could not find /tmp/GenomicsDBJRab39/foo +20: 07:29:17.983 ERROR NativeGenomicsDB - pid=533300 tid=533300 hts_plugin could not find /tmp/GenomicsDBKfrxYt/foo +20: 07:29:17.983 ERROR NativeGenomicsDB - pid=533300 tid=533300 hts_plugin could not find /tmp/GenomicsDBKfrxYt/foo 20: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) -20: 22:43:11.435 ERROR NativeGenomicsDB - pid=60927 tid=60927 hts_plugin write /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) +20: 07:29:17.983 ERROR NativeGenomicsDB - pid=533300 tid=533300 hts_plugin write /dfdfd/dfdfd/non-existent-file error [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/dfdfd/dfdfd/non-existent-file errno=2(No such file or directory) 20: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) -20: 22:43:11.435 ERROR NativeGenomicsDB - pid=60927 tid=60927 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) -20: 0.123 s: test htslib plugin +20: 07:29:17.983 ERROR NativeGenomicsDB - pid=533300 tid=533300 hts_plugin read non-existent-file error [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-file errno=2(No such file or directory) +20: 0.001 s: test htslib plugin 20: 0.000 s: alleles_combiner 20: 0.000 s: gt_remapper -21: 0.068 s: api query_variants direct DP and GT with PP -21: 22:43:11.451 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.451 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.451 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:11.459 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.459 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.460 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:11.470 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.470 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.470 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.020 s: api query_variants with json -21: 22:43:11.470 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.470 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.471 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.029 s: api query_variants direct DP with huge disjoint row ranges +21: 0.023 s: api query_variants direct DP with range composed of multiple points +21: 0.026 s: api query_variants direct DP with range composed of overlapping ranges +21: 07:29:18.054 ERROR NativeGenomicsDB - pid=533318 tid=533318 Query interval 0:-100-1 is out of bounds +21: 0.016 s: api query_variants direct DP with invalid row range +17: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestCNRaaV/test_posixfs_dirfile/foo1 errno=2(No such file or directory) +17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestSTYcTM/test_posixfs_dirread_write/foo +17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestSTYcTM/test_posixfs_dirread_write/foo +17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestSTYcTM/test_posixfs_dirread_write/foo +21: 0.033 s: api query_variants direct DP and GT +21: 0.035 s: api query_variants direct DP and GT with PP +21: 07:29:18.125 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.125 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.126 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.143 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.143 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.143 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.162 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.162 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.163 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.040 s: api query_variants with json +21: 07:29:18.163 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.163 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.164 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/ws/t0_1_2/.__consolidation_lock -21: 22:43:11.484 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.484 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.484 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:11.496 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.496 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.496 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.027 s: api query variants with json string -17: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestHMv4qR/test_posixfs_dirfile/foo1 errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestQXgxmj/test_posixfs_dirread_write/foo -17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestQXgxmj/test_posixfs_dirread_write/foo -17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestQXgxmj/test_posixfs_dirread_write/foo -21: 22:43:11.697 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:11.697 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:11.698 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -14: Thu Oct 30 22:43:11 2025 Memory stats Tracking memory usage END size=6MB resident=4MB share=4MB text=496KB lib=0 data=536KB dt=0 -14: Test rusage -14: user cpu time=0seconds 0microseconds -14: sys cpu time=0seconds 2143microseconds -14: maximum resident set size: 4064KB -14: =============================================================================== -14: test cases: 1 | 1 passed -14: assertions: - none - -14: -12/22 Test #14: test_mem_utils ................... Passed 1.00 sec -21: 0.215 s: api query variants with enabled shared posixfs optimizations -9: =============================================================================== -9: All tests passed (10488239 assertions in 9 test cases) -9: -13/22 Test #9: test_tiledb_utils ................ Passed 1.20 sec +21: 07:29:18.182 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.182 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.183 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.200 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.200 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.201 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.038 s: api query variants with json string +21: 07:29:18.201 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.201 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.202 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.017 s: api query variants with enabled shared posixfs optimizations 21: ---------------- 21: Interval:[0,9223372036854775806] 21: @@ -6735,7 +6757,7 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 -21: 0.278 s: api query_variant_calls direct +21: 0.049 s: api query_variant_calls direct 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6764,7 +6786,7 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 0.025 s: api query_variant_calls direct DP and GT +21: 0.034 s: api query_variant_calls direct DP and GT 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6793,10 +6815,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 0.025 s: api query_variant_calls direct DP and GT with PP -21: 22:43:12.041 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.041 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.041 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +14: Fri Dec 4 07:29:18 2026 Memory stats Tracking memory usage END size=6MB resident=4MB share=4MB text=496KB lib=0 data=536KB dt=0 +14: Test rusage +14: user cpu time=0seconds 3730microseconds +14: sys cpu time=0seconds 0microseconds +14: maximum resident set size: 4000KB +14: =============================================================================== +14: test cases: 1 | 1 passed +14: assertions: - none - +14: +12/22 Test #14: test_mem_utils ................... Passed 1.01 sec +17: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) +17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) +21: 0.044 s: api query_variant_calls direct DP and GT with PP +21: 07:29:18.345 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.346 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.346 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6825,20 +6859,21 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] DP:76 -21: 22:43:12.050 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.050 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.051 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.057 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.057 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.057 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.017 s: api query_variant_calls with json -21: 22:43:12.058 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.058 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.058 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.058 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.058 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.059 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.059 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.359 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.359 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.360 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.376 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.376 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.377 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.032 s: api query_variant_calls with json +21: 07:29:18.378 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.378 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.378 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.379 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.379 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.379 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.379 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +19: Example 6: Done running ./tiledb_array_write_dense_1 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6867,13 +6902,15 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.067 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.067 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.067 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.068 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.068 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.068 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.068 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +19: Example 7: Running ./tiledb_array_write_sparse_1... +21: 07:29:18.400 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.400 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.401 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.401 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.401 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.402 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.402 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +17: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6902,22 +6939,28 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.077 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.077 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.077 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.077 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.077 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.078 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.078 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.006 s: Try query with contig intervals instead of tiledb column intervals -21: 0.026 s: api query_variant_calls with protobuf -21: 22:43:12.083 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.083 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.083 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.084 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.084 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.084 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.084 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.424 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.424 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.425 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync +21: 07:29:18.425 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.425 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.426 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.426 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close +17: =============================================================================== +17: All tests passed (258 assertions in 11 test cases) +17: +21: 0.018 s: Try query with contig intervals instead of tiledb column intervals +21: 0.065 s: api query_variant_calls with protobuf +13/22 Test #17: test_posixfs ..................... Passed 1.11 sec +21: 07:29:18.442 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.442 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.443 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.444 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.444 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.444 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.444 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6946,13 +6989,14 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.093 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.093 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.093 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.093 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.093 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.093 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.093 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.466 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.466 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.467 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.468 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.468 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.468 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.468 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +19: Example 7: Done running ./tiledb_array_write_sparse_1 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -6981,22 +7025,28 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.102 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.102 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.102 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.103 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.103 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.103 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.103 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.006 s: Try query with a filter -21: 0.025 s: api query_variant_calls with protobuf -21: 22:43:12.108 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.108 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.109 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.109 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.109 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.109 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.109 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.488 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.488 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.488 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.489 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.489 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.490 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.490 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +5: Randomness seeded to: 2972532588 +5: [TileDB::Expression] Error: (evaluate_cell) NYI: Filter expressions do not handle empty values yet +5: =============================================================================== +5: All tests passed (527 assertions in 6 test cases) +5: +14/22 Test #5: test_array_iterator .............. Passed 1.32 sec +21: 0.017 s: Try query with a filter +21: 0.062 s: api query_variant_calls with protobuf +21: 07:29:18.505 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.505 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.505 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.506 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.506 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.506 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.506 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7025,13 +7075,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.118 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.118 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.118 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.119 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.119 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.119 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.119 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.528 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.528 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.528 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.529 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.529 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.529 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.529 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7060,22 +7110,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.130 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.130 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.131 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.131 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.131 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.131 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.132 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.013 s: Try query with a filter and workspace with GT ploidy -21: 0.035 s: api query_variant_calls with protobuf -21: 22:43:12.143 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.144 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.144 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.145 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.145 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.145 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.145 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.550 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.550 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.551 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.551 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.551 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.552 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.552 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.024 s: Try query with a filter and workspace with GT ploidy +21: 0.069 s: api query_variant_calls with protobuf +21: 07:29:18.574 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.574 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.574 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.575 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.575 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.576 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.576 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7104,13 +7154,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.163 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.163 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.163 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.164 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.164 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.164 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.164 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.599 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.599 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.599 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.600 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.600 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.600 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.600 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7139,22 +7189,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.180 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.180 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.181 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.181 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.181 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.181 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.181 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.008 s: Try query with a filter and a small segment size to force TileDB buffers overflow -21: 0.045 s: api query_variant_calls with protobuf -21: 22:43:12.188 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.188 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.189 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.189 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.189 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.190 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.190 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.622 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.622 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.622 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.623 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.623 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.624 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.624 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.018 s: Try query with a filter and a small segment size to force TileDB buffers overflow +21: 0.066 s: api query_variant_calls with protobuf +21: 07:29:18.640 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.640 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.641 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.642 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.642 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.642 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.642 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7183,13 +7233,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.200 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.200 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.200 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.201 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.201 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.201 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.201 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.666 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.666 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.666 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.667 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.667 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.668 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.668 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7218,29 +7268,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -17: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) -17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory) -21: 22:43:12.213 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.213 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.213 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.214 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.214 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.214 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.214 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -19: Example 6: Done running ./tiledb_array_write_dense_1 -19: Example 7: Running ./tiledb_array_write_sparse_1... -21: 0.015 s: Try query with POS and ROW with no match -21: 0.040 s: api query_variant_calls with protobuf -21: 22:43:12.228 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.228 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.229 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.229 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.229 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.229 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.229 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -17: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo -17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync -17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close +21: 07:29:18.687 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.687 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.687 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.688 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.688 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.689 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.689 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.019 s: Try query with POS and ROW with no match +21: 0.066 s: api query_variant_calls with protobuf +21: 07:29:18.706 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.706 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.707 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.707 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.707 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.708 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.708 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7269,18 +7312,17 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -17: =============================================================================== -17: All tests passed (258 assertions in 11 test cases) -17: -14/22 Test #17: test_posixfs ..................... Passed 1.54 sec -21: 22:43:12.246 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.246 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.246 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.247 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.247 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.247 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.247 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -19: Example 7: Done running ./tiledb_array_write_sparse_1 +9: =============================================================================== +9: All tests passed (10488239 assertions in 9 test cases) +9: +21: 07:29:18.728 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.728 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.729 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +15/22 Test #9: test_tiledb_utils ................ Passed 1.51 sec +21: 07:29:18.729 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.729 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.730 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.730 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7309,28 +7351,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.267 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.267 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.268 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.269 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.269 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.269 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.269 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -5: Randomness seeded to: 3493341140 -5: [TileDB::Expression] Error: (evaluate_cell) NYI: Filter expressions do not handle empty values yet -5: =============================================================================== -5: All tests passed (527 assertions in 6 test cases) -5: -15/22 Test #5: test_array_iterator .............. Passed 1.59 sec -21: 0.013 s: Try query with POS and ROW -21: 0.053 s: api query_variant_calls with protobuf -21: 22:43:12.281 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.281 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.281 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.282 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.282 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.282 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.282 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.750 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.750 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.751 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.752 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.752 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.752 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.752 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.019 s: Try query with POS and ROW +21: 0.064 s: api query_variant_calls with protobuf +21: 07:29:18.770 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.770 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.770 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.771 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.771 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.771 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.771 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7359,13 +7395,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.300 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.300 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.300 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.301 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.301 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.302 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.302 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.793 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.793 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.793 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.794 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.794 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.795 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.795 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7394,22 +7430,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.320 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.320 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.320 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.321 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.321 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.321 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.321 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.014 s: Try query with ISHOMREF -21: 0.053 s: api query_variant_calls with protobuf -21: 22:43:12.334 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.334 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.334 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.335 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.335 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.335 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.335 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.816 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.816 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.816 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.817 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.817 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.818 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.818 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.019 s: Try query with ISHOMREF +21: 0.065 s: api query_variant_calls with protobuf +21: 07:29:18.835 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.835 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.835 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.836 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.836 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.836 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.836 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7438,13 +7474,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.353 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.354 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.354 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.354 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.354 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.355 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.355 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.857 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.857 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.858 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.859 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.859 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.859 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.859 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7473,22 +7509,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.365 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.365 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.365 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.366 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.366 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.366 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.366 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.008 s: Try query with ISHOMREF -21: 0.039 s: api query_variant_calls with protobuf -21: 22:43:12.373 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.373 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.373 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.373 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.373 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.374 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.374 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.881 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.881 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.881 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.882 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.882 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.883 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.883 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.018 s: Try query with ISHOMREF +21: 0.065 s: api query_variant_calls with protobuf +21: 07:29:18.900 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.900 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.900 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.901 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.901 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.902 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.902 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7517,13 +7553,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.383 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.383 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.384 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.384 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.384 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.384 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.384 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.921 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.921 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.922 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.922 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.922 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.923 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.923 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7552,22 +7588,22 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.394 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.394 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.394 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.395 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.395 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.395 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.395 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.008 s: Try query with ISHOMREF -21: 0.029 s: api query_variant_calls with protobuf -21: 22:43:12.402 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.402 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.402 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.403 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.403 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.403 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.403 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.943 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.943 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.943 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.944 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.944 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.944 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.944 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.018 s: Try query with ISHOMREF +21: 0.061 s: api query_variant_calls with protobuf +21: 07:29:18.961 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.961 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.961 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.962 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.962 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.962 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.962 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7596,13 +7632,13 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -21: 22:43:12.413 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.413 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.413 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.414 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.414 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.414 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.414 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.983 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:18.984 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.984 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.985 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:18.985 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:18.985 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:18.985 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: @@ -7631,40 +7667,36 @@ 21: genomic_interval=1:17385,17385 21: genomic_fields 21: REF:G ALT:[A, ] GT:0/1 DP:76 -18: =============================================================================== -18: All tests passed (450703 assertions in 3 test cases) -18: -16/22 Test #18: test_storage_buffer .............. Passed 1.72 sec -21: 22:43:12.424 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.424 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.424 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.425 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.425 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.425 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.425 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 0.008 s: Try query with ISHOMREF -21: 0.030 s: api query_variant_calls with protobuf -21: 0.006 s: Base configuration -21: 0.006 s: api query_variant_calls with protobuf and config -21: 22:43:12.439 ERROR NativeGenomicsDB - pid=60929 tid=60929 Could not parse query_configuration. Only protobuf QueryConfiguration binary strings accepted as input argument +21: 07:29:19.002 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:19.002 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:19.003 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:19.003 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:19.003 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:19.003 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:19.003 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 0.016 s: Try query with ISHOMREF +21: 0.057 s: api query_variant_calls with protobuf +21: 0.012 s: Base configuration +21: 0.015 s: api query_variant_calls with protobuf and config +21: 07:29:19.034 ERROR NativeGenomicsDB - pid=533318 tid=533318 Could not parse query_configuration. Only protobuf QueryConfiguration binary strings accepted as input argument 21: 0.000 s: Subset Array with pb string that is not Query or ExportConfiguration -21: 0.001 s: api query_variant_calls with protobuf and config -21: 0.005 s: Subset Array using QueryConfiguration -21: 0.006 s: api query_variant_calls with protobuf and config -21: 0.005 s: Subset Array using ExportConfiguration -21: 0.006 s: api query_variant_calls with protobuf and config -21: 0.005 s: Subset Array using QueryConfiguration - two intervals -21: 0.006 s: api query_variant_calls with protobuf and config -21: 0.007 s: Subset Array using QueryConfiguration - multiple queries -21: 0.008 s: api query_variant_calls with protobuf and config -21: 0.006 s: Test filter test for 0 -21: 0.006 s: api query_variant_calls with protobuf new -21: 0.006 s: Test filter test for 1 -21: 0.006 s: api query_variant_calls with protobuf new -21: 0.006 s: Test filter test for 2 -21: 0.006 s: api query_variant_calls with protobuf new -21: 0.006 s: Test filter test for 3 -21: 0.006 s: api query_variant_calls with protobuf new +21: 0.002 s: api query_variant_calls with protobuf and config +21: 0.012 s: Subset Array using QueryConfiguration +21: 0.014 s: api query_variant_calls with protobuf and config +21: 0.012 s: Subset Array using ExportConfiguration +21: 0.016 s: api query_variant_calls with protobuf and config +21: 0.013 s: Subset Array using QueryConfiguration - two intervals +21: 0.016 s: api query_variant_calls with protobuf and config +21: 0.016 s: Subset Array using QueryConfiguration - multiple queries +21: 0.019 s: api query_variant_calls with protobuf and config +21: 0.014 s: Test filter test for 0 +21: 0.014 s: api query_variant_calls with protobuf new +21: 0.016 s: Test filter test for 1 +21: 0.016 s: api query_variant_calls with protobuf new +21: 0.015 s: Test filter test for 2 +21: 0.015 s: api query_variant_calls with protobuf new +21: 0.015 s: Test filter test for 3 +21: 0.016 s: api query_variant_calls with protobuf new 21: 273 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"REF":["C","G"],"GT":["C/C","G/A"],"DP":[null,null]},"HG01530":{"CHR":["1"],"POS":[17385],"REF":["G"],"GT":["G/A"],"DP":[76]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"REF":["C","G"],"GT":["C/C","T/T"],"DP":[null,120]}} 21: 21: 207 {"FIELD":["CHR","POS","REF","GT","DP"],"HG00141":[["1",12141,"C","C/C",null],["1",17385,"G","G/A",null]],"HG01530":[["1",17385,"G","G/A",76]],"HG01958":[["1",12145,"C","C/C",null],["1",17385,"G","T/T",120]]} @@ -7679,102 +7711,106 @@ 21: 21: 1999 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"REF":["C","G"],"QUAL":[null,475.7699890136719],"FILTER":[null,"0"],"DP":[null,null],"BaseQRankSum":[null,-2.0959999561309816],"ClippingRankSum":[null,-1.8589999675750733],"DS":["1","1"],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MLEAC":[null,"1, 5"],"MLEAF":[null,"0.500000, 1.200000"],"MQ":[null,31.719999313354493],"RAW_MQ":[null,5.5],"MQ0":[null,8],"MQRankSum":[null,-0.32899999618530276],"ReadPosRankSum":[null,0.004999999888241291],"PGT":[null,"0|1"],"PID":[null,"17385_G_A"],"AD":[null,"58, 22, 17"],"DP_FORMAT":[2,80],"GQ":[0,99],"GT":["C/C","G/A"],"MIN_DP":[0,null],"PL":["0, 0, 0","504, 0, 9807, 678, 1870, 2548"],"SB":[null,"58, 0, 22, 0"]},"HG01530":{"CHR":["1"],"POS":[17385],"REF":["G"],"QUAL":[989.77001953125],"FILTER":[null],"DP":[76],"BaseQRankSum":[1.0460000038146973],"ClippingRankSum":[-2.242000102996826],"DS":[null],"HaplotypeScore":[null],"InbreedingCoeff":[null],"MLEAC":["1, 0"],"MLEAF":["0.500000, 0.000000"],"MQ":[59.369998931884769],"RAW_MQ":[null],"MQ0":[0],"MQRankSum":[-0.4320000112056732],"ReadPosRankSum":[2.055000066757202],"PGT":[null],"PID":[null],"AD":["40, 36, 0"],"DP_FORMAT":[76],"GQ":[99],"GT":["G/A"],"MIN_DP":[null],"PL":["1018, 0, 1116, 1137, 1224, 2361"],"SB":["9, 31, 13, 23"]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"REF":["C","G"],"QUAL":[null,3302.77001953125],"FILTER":[null,"0"],"DP":[null,120],"BaseQRankSum":[null,-2.0739998817443849],"ClippingRankSum":[null,0.5550000071525574],"DS":["1",null],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MLEAC":[null,"2, 7"],"MLEAF":[null,"1.000000, 0.700000"],"MQ":[null,29.81999969482422],"RAW_MQ":[null,2.5],"MQ0":[null,3],"MQRankSum":[null,-1.36899995803833],"ReadPosRankSum":[null,-0.10100000351667404],"PGT":[null,"0|1"],"PID":[null,"17385_G_T"],"AD":[null,"0, 120, 37"],"DP_FORMAT":[3,120],"GQ":[0,99],"GT":["C/C","T/T"],"MIN_DP":[0,null],"PL":["0, 0, 0","3336, 358, 0, 4536, 958, 7349"],"SB":[null,"0, 0, 0, 0"]}} 21: -21: 0.042 s: api query_variant_calls with JSONVariantCallProcessor +21: 0.056 s: api query_variant_calls with JSONVariantCallProcessor 21: 0.000 s: Test genomicsdb demo test case -21: 0.020 s: api generate_vcf direct -21: 22:43:12.551 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.551 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.551 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.009 s: api generate_vcf with json -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61164 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61164 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61165 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61165 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61163 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61162 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61162 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61167 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61167 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61164 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61169 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61169 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61163 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61166 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61166 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61162 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61165 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61168 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.561 WARN NativeGenomicsDB - pid=60929 tid=61168 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61167 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61169 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61166 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61163 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.561 DEBUG NativeGenomicsDB - pid=60929 tid=61168 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 0.019 s: api generate_vcf with json multiple threads -21: 22:43:12.579 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.579 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.579 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.580 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.580 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.580 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.580 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.588 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.588 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.588 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.588 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.588 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.589 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.589 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.596 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -21: 22:43:12.596 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.596 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.597 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -21: 22:43:12.597 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead -21: 22:43:12.597 DEBUG NativeGenomicsDB - pid=60929 tid=60929 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name -21: 22:43:12.597 WARN NativeGenomicsDB - pid=60929 tid=60929 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +18: =============================================================================== +18: All tests passed (450703 assertions in 3 test cases) +18: +16/22 Test #18: test_storage_buffer .............. Passed 1.91 sec +21: 0.379 s: api generate_vcf direct +21: 07:29:19.596 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:19.596 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:19.597 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 07:29:19.655 INFO NativeGenomicsDB - pid=533300 tid=533300 Plink progress 3452039 / 6904084 = 50.00% +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 PL field for sample: HG00141 row: 0 column: 12277 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 GL field for sample: HG00141 row: 0 column: 12277 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 PL field for sample: HG00141 row: 0 column: 12299 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 GL field for sample: HG00141 row: 0 column: 12299 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 PL field for sample: HG01958 row: 1 column: 12299 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 GL field for sample: HG01958 row: 1 column: 12299 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 PL field for sample: HG00141 row: 0 column: 12399 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 GL field for sample: HG00141 row: 0 column: 12399 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 PL field for sample: HG01958 row: 1 column: 12399 contains a negative value or otherwise did not parse, full string: 0, 1, -2147483648 +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 GL field for sample: HG01958 row: 1 column: 12399 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 GL field for sample: HG00141 row: 0 column: 12499 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan, nan, nan, nan +20: 07:29:19.655 ERROR NativeGenomicsDB - pid=533300 tid=533300 PL field for sample: HG01958 row: 1 column: 12499 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648 +20: 07:29:19.655 WARN NativeGenomicsDB - pid=533300 tid=533300 GL probabilities at sample: HG01958 row: 1 column: 12499 sum to 0.8981071705534972, expected near 1. Generated BGEN may be invalid +21: 0.423 s: api generate_vcf with json +21: 07:29:20.020 DEBUG NativeGenomicsDB - pid=533318 tid=536309 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.020 WARN NativeGenomicsDB - pid=533318 tid=536309 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.020 DEBUG NativeGenomicsDB - pid=533318 tid=536311 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.020 WARN NativeGenomicsDB - pid=533318 tid=536311 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.020 DEBUG NativeGenomicsDB - pid=533318 tid=536310 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.020 WARN NativeGenomicsDB - pid=533318 tid=536310 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.020 DEBUG NativeGenomicsDB - pid=533318 tid=536314 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.020 WARN NativeGenomicsDB - pid=533318 tid=536314 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.020 DEBUG NativeGenomicsDB - pid=533318 tid=536315 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.020 WARN NativeGenomicsDB - pid=533318 tid=536315 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536316 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.021 WARN NativeGenomicsDB - pid=533318 tid=536316 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536311 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536317 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536309 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 WARN NativeGenomicsDB - pid=533318 tid=536317 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536314 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536310 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536315 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 WARN NativeGenomicsDB - pid=533318 tid=536318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536316 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536317 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.021 DEBUG NativeGenomicsDB - pid=533318 tid=536318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +20: 2.059 s: test bgen +20: 07:29:20.043 ERROR NativeGenomicsDB - pid=533300 tid=533300 VariantStorageManagerException exception : Could not open workspace +20: 07:29:20.044 ERROR NativeGenomicsDB - pid=533300 tid=533300 Could not open array non_existent_array in workspace /tmp/GenomicsDBhtsCII/ws +20: 07:29:20.044 ERROR NativeGenomicsDB - pid=533300 tid=533300 VariantQueryProcessorException : Could not open array non_existent_array at workspace /tmp/GenomicsDBhtsCII/ws +20: 0.001 s: constructor +20: 07:29:20.044 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +20: 07:29:20.045 WARN NativeGenomicsDB - pid=533300 tid=533300 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:20.045 DEBUG NativeGenomicsDB - pid=533300 tid=533300 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 0.027 s: api generate_vcf with json multiple threads +21: 07:29:20.047 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.047 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.048 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.049 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.049 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.049 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:20.049 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +20: 07:29:20.055 ERROR NativeGenomicsDB - pid=533300 tid=533300 Invalid query attribute : non_existent_attribute +20: 0.012 s: test basic queries +20: 07:29:20.056 INFO NativeGenomicsDB - pid=533300 tid=533300 Mem usage Check basic memory usage rss=49M +20: 0.000 s: check basic memory usage +20: =============================================================================== +20: All tests passed (1439 assertions in 34 test cases) +20: +20: 07:29:20.056 DEBUG NativeGenomicsDB - pid=533300 tid=533300 Deleting htslib_fs_adapter tiledb_ctx_map +17/22 Test #20: ctests ........................... Passed 2.64 sec +21: 07:29:20.066 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.066 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.067 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.067 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.067 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.068 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:20.068 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.084 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn +21: 07:29:20.084 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.085 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.086 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name +21: 07:29:20.086 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead +21: 07:29:20.086 DEBUG NativeGenomicsDB - pid=533318 tid=533318 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets): missing field sample_name +21: 07:29:20.086 WARN NativeGenomicsDB - pid=533318 tid=533318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON file instead 21: ---------------- 21: Interval:[0,1000000000] 21: 21: ---------------- 21: Interval:[0,1000000000] 21: -21: 0.019 s: api annotate query_variant_calls with test datasource 0 +21: 0.040 s: api annotate query_variant_calls with test datasource 0 21: =============================================================================== 21: All tests passed (1548 assertions in 26 test cases) 21: -17/22 Test #21: api_tests ........................ Passed 1.89 sec -20: 22:43:13.453 INFO NativeGenomicsDB - pid=60927 tid=60927 Plink progress 3452039 / 6904084 = 50.00% -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 PL field for sample: HG00141 row: 0 column: 12277 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 GL field for sample: HG00141 row: 0 column: 12277 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 PL field for sample: HG00141 row: 0 column: 12299 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 GL field for sample: HG00141 row: 0 column: 12299 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 PL field for sample: HG01958 row: 1 column: 12299 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 GL field for sample: HG01958 row: 1 column: 12299 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 PL field for sample: HG00141 row: 0 column: 12399 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648 -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 GL field for sample: HG00141 row: 0 column: 12399 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 PL field for sample: HG01958 row: 1 column: 12399 contains a negative value or otherwise did not parse, full string: 0, 1, -2147483648 -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 GL field for sample: HG01958 row: 1 column: 12399 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 GL field for sample: HG00141 row: 0 column: 12499 contains a strictly positive value or otherwise did not parse, full string nan, nan, nan, nan, nan, nan -20: 22:43:13.453 ERROR NativeGenomicsDB - pid=60927 tid=60927 PL field for sample: HG01958 row: 1 column: 12499 contains a negative value or otherwise did not parse, full string: -2147483648, -2147483648, -2147483648, -2147483648, -2147483648, -2147483648 -20: 22:43:13.453 WARN NativeGenomicsDB - pid=60927 tid=60927 GL probabilities at sample: HG01958 row: 1 column: 12499 sum to 0.8981071705534972, expected near 1. Generated BGEN may be invalid -20: 2.387 s: test bgen -20: 22:43:13.823 ERROR NativeGenomicsDB - pid=60927 tid=60927 VariantStorageManagerException exception : Could not open workspace -20: 22:43:13.823 ERROR NativeGenomicsDB - pid=60927 tid=60927 Could not open array non_existent_array in workspace /tmp/GenomicsDBrtQEzr/ws -20: 22:43:13.823 ERROR NativeGenomicsDB - pid=60927 tid=60927 VariantQueryProcessorException : Could not open array non_existent_array at workspace /tmp/GenomicsDBrtQEzr/ws -20: 0.000 s: constructor -20: 22:43:13.823 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn -20: 22:43:13.823 WARN NativeGenomicsDB - pid=60927 tid=60927 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead -20: 22:43:13.823 DEBUG NativeGenomicsDB - pid=60927 tid=60927 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name -20: 22:43:13.829 ERROR NativeGenomicsDB - pid=60927 tid=60927 Invalid query attribute : non_existent_attribute -20: 0.006 s: test basic queries -20: 22:43:13.829 INFO NativeGenomicsDB - pid=60927 tid=60927 Mem usage Check basic memory usage rss=50M -20: 0.000 s: check basic memory usage -20: =============================================================================== -20: All tests passed (1439 assertions in 34 test cases) -20: -20: 22:43:13.829 DEBUG NativeGenomicsDB - pid=60927 tid=60927 Deleting htslib_fs_adapter tiledb_ctx_map -18/22 Test #20: ctests ........................... Passed 3.13 sec -7: Randomness seeded to: 410320414 +18/22 Test #21: api_tests ........................ Passed 2.89 sec +7: Randomness seeded to: 154489398 19: Example 8: Running ./tiledb_ls... 19: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=&& errno=2(No such file or directory) 19: Example 8: Done running ./tiledb_ls @@ -7799,12 +7835,7 @@ 19: 15 pppp ( 15.1, 15.2) 19: Example 9: Done running ./tiledb_array_read_dense_1 19: Example 10: Running ./tiledb_array_write_dense_2... -8: Randomness seeded to: 3459830065 19: Example 10: Done running ./tiledb_array_write_dense_2 -8: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== -8: All tests passed (11647013 assertions in 15 test cases) -8: -19/22 Test #8: test_sparse_array_api ............ Passed 12.65 sec 19: Example 11: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7838,13 +7869,11 @@ 19: 15 19: Example 12: Done running ./tiledb_array_read_dense_2 19: Example 13: Running ./tiledb_array_write_dense_sorted... -19: Example 13: Done running ./tiledb_array_write_dense_sorted 7: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== -7: All tests passed (150274626 assertions in 4 test cases) +7: All tests passed (109832778 assertions in 4 test cases) 7: -20/22 Test #7: test_dense_array_api ............. Passed 16.89 sec -22: Build with DISABLE_MPI option set, not running gt_mpi_gather tests -21/22 Test #22: tools_tests ...................... Passed 20.32 sec +19/22 Test #7: test_dense_array_api ............. Passed 17.19 sec +19: Example 13: Done running ./tiledb_array_write_dense_sorted 19: Example 14: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7867,6 +7896,11 @@ 19: Example 14: Done running ./tiledb_array_read_dense_1 19: Example 15: Running ./tiledb_array_update_dense_1... 19: Example 15: Done running ./tiledb_array_update_dense_1 +8: Randomness seeded to: 3532409959 +8: 10% [=== ] 20% [====== ] 30% [========= ] 40% [============ ] 50% [=============== ] 60% [================== ] 70% [===================== ] 80% [======================= ] 89% [========================== ] 99% [============================= ] =============================================================================== +8: All tests passed (5872369 assertions in 15 test cases) +8: +20/22 Test #8: test_sparse_array_api ............ Passed 30.58 sec 19: Example 16: Running ./tiledb_array_read_dense_1... 19: a1 a2 (a3.first, a3.second) 19: ----------------------------------------- @@ -7990,6 +8024,8 @@ 19: Example 29: Done running ./tiledb_array_read_sparse_filter_2 19: Example 30: Running ./tiledb_array_update_sparse_1... 19: Example 30: Done running ./tiledb_array_update_sparse_1 +22: Build with DISABLE_MPI option set, not running gt_mpi_gather tests +21/22 Test #22: tools_tests ...................... Passed 49.48 sec 19: Example 31: Running ./tiledb_array_read_sparse_1... 19: coords a1 a2 (a3.first, a3.second) 19: -------------------------------------------------- @@ -8109,17 +8145,17 @@ 19: 0, 2, 3 2 third 19: 2, 1, 1 3 fourth 19: Example 42: Done running ./tiledb_array_3d -22/22 Test #19: ci_tests ......................... Passed 57.81 sec +22/22 Test #19: ci_tests ......................... Passed 66.19 sec 100% tests passed, 0 tests failed out of 22 -Total Test time (real) = 57.84 sec +Total Test time (real) = 66.46 sec make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.5 -B/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -8131,85 +8167,94 @@ make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/CMakeFiles/protobuf_ep.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/bitshuffle_core.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/bitshuffle/iochain.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". -Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/codec/external/lz4/lz4.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f CMakeFiles/protobuf_ep.dir/build.make CMakeFiles/protobuf_ep.dir/build Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bcf_sr_sort.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/bgzf.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'CMakeFiles/protobuf_ep.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_codecs.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +[ 0%] Built target protobuf_ep +make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_decode.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_encode.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_sorted_write_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_external.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". Dependencies file "genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/cram/cram_index.c.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/array/array_read_state.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/src/c_api/tiledb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/compiler_depend.internal". 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/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-htslib/CMakeFiles/genomicsdb-hts.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build.make src/resources/CMakeFiles/PROTOBUF_GENERATED_CXX_TARGET.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 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Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_callsets_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_coordinates.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_import_config.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_vid_mapping.pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/annotation_service.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/api/genomicsdb_json_processor.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". @@ -8271,27 +8296,19 @@ Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_iterators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/genomicsdb_multid_vector_field.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_shared Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_cell.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 13%] Built target genomicsdb-hts Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_data.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_field_handler.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/genomicsdb/variant_storage_manager.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/load_operators.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_file_base.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/loader/tiledb_loader_text_file.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/query_operations/broad_combined_gvcf.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". @@ -8312,1081 +8329,1100 @@ Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/htslib_fs_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf2binary.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". -[ 25%] Built target tiledb_static Dependencies file "src/main/CMakeFiles/GenomicsDB_library_object_files.dir/cpp/src/vcf/vcf_adapter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/GenomicsDB_library_object_files.dir/compiler_depend.internal". +[ 25%] Built target TILEDB_CORE_OBJECTS +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/depend +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_static.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/compiler_depend.internal". +[ 25%] Built target tiledb_static make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/depend -[ 26%] Built target tiledb_shared +Consolidate compiler generated dependencies of target tiledb_shared +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target GenomicsDB_library_object_files +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build.make genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/depend -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend +make[4]: Nothing to be done for 'genomicsdb-tiledb/core/CMakeFiles/tiledb_shared.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/depend +make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/depend -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/depend -make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/depend make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/depend +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/depend +Consolidate compiler generated dependencies of target test_print_array_schema +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test 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/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/test /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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/build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples 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'/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" -make -f 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/src/c_api/test_array_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/src/expressions/test_expressions.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/src/c_api/test_tiledb_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/src/array/test_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/src/benchmark/test_print_array_schema.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/src/codec/test_codec.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/src/c_api/test_array_schema_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/src/expressions/test_filter_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_print_book_keeping -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/src/misc/test_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend -Consolidate compiler generated dependencies of target test_sparse_array_benchmark -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_print_array_schema -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target test_array_schema_api +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build Consolidate compiler generated dependencies of target test_sparse_array_api -Consolidate compiler generated dependencies of target test_dense_array_api -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_array_iterator make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target test_expressions +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_array_schema -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_benchmark.dir/build -Consolidate compiler generated dependencies of target test_tiledb_utils make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_codec -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build -make -f genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build -Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/src/storage_manager/test_posixfs.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_array_schema_api +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/src/codec/test_codec_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/src/misc/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/src/storage_manager/test_storage_buffer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/src/tiledb_array_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_filter_api -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build +Consolidate compiler generated dependencies of target test_tiledb_utils +Dependencies file 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target test_codec make -f genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_aio_write_dense -Consolidate compiler generated dependencies of target tiledb_array_consolidate -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_3d -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_book_keeping.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build.make 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/compiler_depend.internal". make -f genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_print_array_schema.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target test_filter_api +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/src/tiledb_array_create_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Consolidate compiler generated dependencies of target test_posixfs -make -f genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build -Consolidate compiler generated dependencies of target test_storage_buffer +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/src/c_api/test_dense_array_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_iterator.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build -Dependencies file 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"genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build +Consolidate compiler generated dependencies of target test_mem_utils make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build -Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_dense -Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse -Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse_filter -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_array_schema.dir/build'. +Consolidate compiler generated dependencies of target test_dense_array_api make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_create_dense +Consolidate compiler generated dependencies of target test_codec_filter +make -f genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build +Consolidate compiler generated dependencies of target test_expressions +Consolidate compiler generated dependencies of target tiledb_array_consolidate +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/src/tiledb_array_aio_write_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target test_utils make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 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Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_filter_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d" is newer than depends file 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d" is newer than depends file 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tiledb_array_parallel_read_sparse_1 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_tiledb_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/src/tiledb_array_3d.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/src/tiledb_array_aio_read_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/src/misc/test_uri.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_aio_write_dense +Dependencies file "genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/src/tiledb_array_create_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_sparse +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_aio_read_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 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-make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build'. +Consolidate compiler generated dependencies of target tiledb_array_create_sparse make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build'. -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_sparse_array_api.dir/build'. +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_expressions.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_read_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_codec_filter.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_3d.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target test_uri make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_mem_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build'. +[ 26%] Built target test_print_book_keeping make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_utils.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_aio_write_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/src/tiledb_array_iterator_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build +[ 27%] Built target test_print_array_schema +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build +make -f genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build.make genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/src/tiledb_array_iterator_sparse_filter.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build'. -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_create_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_2 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_storage_buffer.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_primitive +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/src/tiledb_array_parallel_consolidate_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_dense_array_api.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build'. +Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_dense make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 28%] Built target test_sparse_array_benchmark make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_posixfs.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/test/CMakeFiles/test_uri.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build +Consolidate compiler generated dependencies of target tiledb_array_iterator_sparse_filter make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 28%] Built target test_array_schema +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 43%] Built target GenomicsDB_library_object_files make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_iterator_sparse_filter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_dense.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/src/tiledb_array_parallel_consolidate_sparse.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_parallel_consolidate_sparse +[ 44%] Built target test_sparse_array_api make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build +[ 45%] Built target test_array_schema_api make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build'. +[ 46%] Built target test_tiledb_utils +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_consolidate_sparse.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 47%] Built target test_codec +[ 48%] Built target test_filter_api +[ 49%] Built target test_array_iterator +[ 49%] Built target test_expressions +[ 49%] Built target test_mem_utils +[ 49%] Built target test_codec_filter +[ 50%] Built target test_utils +[ 52%] Built target test_posixfs +[ 52%] Built target test_storage_buffer +[ 52%] Built target tiledb_array_3d +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/depend +[ 50%] Built target tiledb_array_aio_read_dense +[ 53%] Built target tiledb_array_aio_write_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/depend +[ 54%] Built target test_dense_array_api +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 27%] Built target test_array_iterator -[ 27%] Built target test_expressions -[ 27%] Built target test_print_book_keeping -[ 28%] Built target test_sparse_array_benchmark -[ 29%] Built target test_print_array_schema -[ 30%] Built target test_tiledb_utils -[ 31%] Built target test_dense_array_api -[ 31%] Built target test_array_schema -[ 32%] Built target test_codec -[ 32%] Built target test_mem_utils -[ 32%] Built target test_uri -[ 33%] Built target test_sparse_array_api -[ 33%] Built target test_codec_filter -[ 34%] Built target test_filter_api +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/depend +[ 55%] Built target tiledb_array_create_dense +[ 55%] Built target tiledb_array_create_sparse +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/DependInfo.cmake "--color=" +[ 56%] Built target tiledb_array_consolidate +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/DependInfo.cmake "--color=" +[ 56%] Built target tiledb_array_iterator_dense +[ 56%] Built target test_uri +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/DependInfo.cmake "--color=" +[ 57%] Built target tiledb_array_iterator_sparse +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/depend -[ 35%] Built target test_array_schema_api +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" +[ 58%] Built target tiledb_array_parallel_consolidate_sparse make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/depend -[ 35%] Built target tiledb_array_aio_read_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/DependInfo.cmake "--color=" -[ 36%] Built target test_utils +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" +[ 58%] Built target tiledb_array_parallel_consolidate_dense +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/depend -[ 37%] Built target tiledb_array_consolidate +[ 59%] Built target tiledb_array_iterator_sparse_filter make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/DependInfo.cmake "--color=" make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/DependInfo.cmake "--color=" -[ 38%] Built target tiledb_array_3d +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/DependInfo.cmake "--color=" -[ 39%] Built target tiledb_array_aio_write_dense +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/src/tiledb_array_parallel_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/DependInfo.cmake "--color=" -[ 39%] Built target tiledb_array_create_dense make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/depend -[ 40%] Built target tiledb_array_parallel_consolidate_dense -[ 40%] Built target tiledb_array_iterator_sparse -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/src/tiledb_array_parallel_read_mpi_io_dense.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/src/tiledb_array_parallel_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/depend make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/depend -[ 41%] Built target tiledb_array_iterator_sparse_filter -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_mpi_io_dense +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" -[ 42%] Built target tiledb_array_parallel_read_mpi_io_dense -[ 42%] Built target test_storage_buffer -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" -[ 43%] Built target tiledb_array_parallel_read_dense_2 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend -[ 44%] Built target tiledb_array_create_sparse -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend -Consolidate compiler generated dependencies of target GenomicsDB_library_object_files -[ 45%] Built target tiledb_array_parallel_write_dense_2 -[ 45%] Built target tiledb_array_parallel_read_sparse_1 -[ 45%] Built target test_posixfs -[ 46%] Built target tiledb_array_parallel_consolidate_sparse -[ 46%] Built target tiledb_array_parallel_read_dense_1 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" -[ 46%] Built target tiledb_array_iterator_dense -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" -[ 47%] Built target tiledb_array_parallel_read_sparse_2 -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend -[ 48%] Built target tiledb_array_parallel_write_dense_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend -[ 48%] Built target tiledb_array_parallel_write_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" -make -f src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build.make src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_1.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/src/tiledb_array_parallel_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/src/tiledb_array_parallel_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" -[ 49%] Built target tiledb_array_parallel_write_sparse_1 -[ 50%] Built target tiledb_array_primitive -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/src/tiledb_array_parallel_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_mpi_io_dense.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_2 +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_dense_2 Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/src/tiledb_array_read_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/src/tiledb_array_parallel_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/compiler_depend.internal". Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/src/tiledb_array_read_dense_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/src/tiledb_array_parallel_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_parallel_read_sparse_1 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_1.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/src/tiledb_array_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_read_dense_1 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/src/tiledb_array_read_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_2.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_dense_1 +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/src/tiledb_array_read_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_dense_3 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_dense_sorted Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_2 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_1 -Consolidate compiler generated dependencies of target tiledb_array_read_sparse_1 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/src/tiledb_array_update_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_read_dense_3 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/src/tiledb_array_read_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_primitive +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file 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"genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/src/tiledb_array_update_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_read_dense_2 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_write_dense_1 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_update_dense_2 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". -Dependencies file 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-Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/src/tiledb_array_read_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target tiledb_array_update_dense_1 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/src/tiledb_array_read_sparse_filter_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_1 +Consolidate compiler generated dependencies of target tiledb_array_read_dense_2 +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_1 make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build -Consolidate compiler generated dependencies of target tiledb_array_update_sparse_1 -Consolidate compiler generated dependencies of target tiledb_array_update_sparse_2 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/src/tiledb_array_parallel_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/src/tiledb_array_read_sparse_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_array_parallel_write_sparse_2 +Dependencies file 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genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build -Consolidate compiler generated dependencies of target tiledb_array_write_dense_2 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build'. +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build +Consolidate compiler generated dependencies of target tiledb_array_read_dense_sorted +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/src/tiledb_array_read_sparse_filter_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_1 -Consolidate compiler generated dependencies of target tiledb_array_write_dense_sorted -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_2 +Consolidate compiler generated dependencies of target tiledb_array_update_sparse_1 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file 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depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_clear_delete_move +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/src/tiledb_array_write_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build +Consolidate compiler generated dependencies of target tiledb_array_read_sparse_filter_2 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/src/tiledb_array_write_dense_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_2.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file 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"genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_4 -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_array_write_sparse_3 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/src/tiledb_array_write_dense_sorted.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build +Consolidate compiler generated dependencies of target tiledb_array_write_dense_1 +Consolidate compiler generated dependencies of target tiledb_array_write_dense_sorted +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/src/tiledb_array_write_sparse_1.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/src/tiledb_array_update_dense_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_parallel_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_1 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_catching_errors -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_config make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build +Consolidate compiler generated dependencies of target tiledb_array_update_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build +Consolidate compiler generated dependencies of target tiledb_array_update_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledb_ls -Consolidate compiler generated dependencies of target tiledb_metadata_iterator -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build -Consolidate compiler generated dependencies of target tiledb_delete -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_filter_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_consolidate make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_ls_workspaces -Consolidate compiler generated dependencies of target tiledb_metadata_create -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_read_sparse_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_write -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build -Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_1.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_read -Consolidate compiler generated dependencies of target tiledb_metadata_update +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_dense_sorted.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_update_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/main/CMakeFiles/GenomicsDB_library_object_files.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_1.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 60%] Built target tiledb_array_parallel_read_mpi_io_dense +[ 60%] Built target tiledb_array_parallel_read_dense_1 +[ 60%] Built target tiledb_array_parallel_read_sparse_1 +[ 60%] Built target tiledb_array_parallel_write_dense_2 +[ 61%] Built target tiledb_array_parallel_read_sparse_2 +[ 62%] Built target tiledb_array_parallel_write_sparse_1 +[ 63%] Built target tiledb_array_parallel_read_dense_2 +[ 64%] Built target tiledb_array_parallel_write_dense_1 +[ 65%] Built target tiledb_array_read_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/depend +[ 65%] Built target tiledb_array_parallel_write_sparse_2 +[ 65%] Built target tiledb_array_read_sparse_1 +[ 66%] Built target tiledb_array_primitive +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/depend +[ 67%] Built target tiledb_array_read_dense_3 +[ 67%] Built target tiledb_array_read_dense_2 +[ 68%] Built target tiledb_array_read_sparse_2 +[ 69%] Built target tiledb_array_write_dense_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build'. +[ 70%] Built target tiledb_array_read_sparse_filter_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/DependInfo.cmake "--color=" +[ 71%] Built target tiledb_array_read_dense_sorted +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/depend +[ 71%] Built target tiledb_array_read_sparse_filter_2 +[ 72%] Built target tiledb_array_read_sparse_sorted +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/DependInfo.cmake "--color=" +[ 72%] Built target tiledb_array_write_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/depend +[ 73%] Built target tiledb_array_write_dense_sorted +[ 73%] Built target tiledb_array_update_sparse_1 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/DependInfo.cmake "--color=" +[ 74%] Built target tiledb_array_update_dense_2 +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/depend +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/src/tiledb_delete.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/depend +[ 75%] Built target tiledb_array_write_sparse_1 +[ 75%] Built target tiledb_array_update_dense_1 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/DependInfo.cmake "--color=" +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/depend +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/depend +make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/DependInfo.cmake "--color=" +Consolidate compiler generated dependencies of target tiledb_delete +[ 76%] Built target tiledb_array_update_sparse_2 +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/src/tiledb_array_write_sparse_2.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/src/tiledb_config.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_2 make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/src/tiledb_array_write_sparse_4.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/src/tiledb_array_write_sparse_3.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/src/tiledb_clear_delete_move.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build'. -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_4 +Consolidate compiler generated dependencies of target tiledb_array_write_sparse_3 +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_clear_delete_move +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/src/tiledb_catching_errors.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target tiledb_metadata_primitive -Consolidate compiler generated dependencies of target tiledb_workspace_group_create +Consolidate compiler generated dependencies of target tiledb_config +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build'. +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/src/tiledb_ls.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build'. +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/src/tiledb_ls_workspaces.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/compiler_depend.internal". +make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_4.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_clear_delete_move.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_2.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build'. +Consolidate compiler generated dependencies of target tiledb_ls +Consolidate compiler generated dependencies of target tiledb_catching_errors make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build +Consolidate compiler generated dependencies of target tiledb_ls_workspaces make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build'. +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/src/tiledb_metadata_consolidate.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_config.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/src/tiledb_metadata_iterator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_metadata_consolidate +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_array_write_sparse_3.dir/build'. +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/compiler_depend.internal". make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build +Consolidate compiler generated dependencies of target tiledb_metadata_iterator +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_catching_errors.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_delete.dir/build'. +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/src/tiledb_metadata_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/src/tiledb_metadata_update.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/compiler_depend.internal". +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/src/tiledb_metadata_read.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_metadata_update +Dependencies file "src/main/CMakeFiles/tiledbgenomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/src/tiledb_metadata_primitive.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target tiledb_metadata_read +Consolidate compiler generated dependencies of target tiledb_metadata_create make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_ls_workspaces.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_iterator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_consolidate.dir/build'. +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Consolidate compiler generated dependencies of target tiledb_metadata_primitive +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build +Consolidate compiler generated dependencies of target tiledbgenomicsdb +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build +[ 77%] Built target tiledb_delete make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_read.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/src/tiledb_metadata_write.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/compiler_depend.internal". +[ 77%] Built target tiledb_array_write_sparse_4 +Consolidate compiler generated dependencies of target tiledb_metadata_write make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_update.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 77%] Built target tiledb_config +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/src/tiledb_workspace_group_create.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". +Dependencies file "genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/compiler_depend.internal". +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 78%] Built target tiledb_array_write_sparse_3 +make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_primitive.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 50%] Built target tiledb_array_read_sparse_filter_1 -[ 52%] Built target tiledb_array_read_dense_sorted -[ 52%] Built target tiledb_array_read_sparse_1 -[ 52%] Built target tiledb_array_read_dense_1 -[ 67%] Built target GenomicsDB_library_object_files -[ 68%] Built target tiledb_array_read_dense_3 -[ 69%] Built target tiledb_array_update_dense_2 -[ 69%] Built target tiledb_array_update_dense_1 -make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/depend -[ 69%] Built target tiledb_array_read_dense_2 -make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/depend -[ 70%] Built target tiledb_array_read_sparse_2 -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/DependInfo.cmake "--color=" -[ 71%] Built target tiledb_array_read_sparse_sorted make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdb.dir/DependInfo.cmake "--color=" -[ 72%] Built target tiledb_array_read_sparse_filter_2 -[ 72%] Built target tiledb_array_write_sparse_2 -[ 73%] Built target tiledb_array_write_sparse_1 -[ 73%] Built target tiledb_array_write_dense_2 -[ 74%] Built target tiledb_array_write_dense_1 -[ 75%] Built target tiledb_array_update_sparse_2 -[ 75%] Built target tiledb_array_update_sparse_1 -[ 76%] Built target tiledb_array_write_dense_sorted -[ 77%] Built target tiledb_array_write_sparse_3 -[ 78%] Built target tiledb_clear_delete_move -[ 80%] Built target tiledb_metadata_iterator -[ 80%] Built target tiledb_metadata_consolidate -[ 80%] Built target tiledb_metadata_write -[ 80%] Built target tiledb_ls_workspaces -[ 80%] Built target tiledb_array_write_sparse_4 -[ 82%] Built target tiledb_metadata_update -[ 82%] Built target tiledb_catching_errors -[ 83%] Built target tiledb_ls -[ 83%] Built target tiledb_config -[ 83%] Built target tiledb_metadata_create -[ 84%] Built target tiledb_delete -[ 84%] Built target tiledb_metadata_read -[ 85%] Built target tiledb_workspace_group_create -[ 86%] Built target tiledb_metadata_primitive -Dependencies file "src/main/CMakeFiles/tiledbgenomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/tiledbgenomicsdb.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tiledbgenomicsdb +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_metadata_write.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/main/CMakeFiles/genomicsdb.dir/build.make src/main/CMakeFiles/genomicsdb.dir/build +make[4]: Nothing to be done for 'src/main/CMakeFiles/tiledbgenomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/main/CMakeFiles/tiledbgenomicsdb.dir/build.make src/main/CMakeFiles/tiledbgenomicsdb.dir/build +Consolidate compiler generated dependencies of target tiledb_workspace_group_create +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build.make genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build +[ 78%] Built target tiledb_array_write_sparse_2 make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/main/CMakeFiles/tiledbgenomicsdb.dir/build'. +make[4]: Nothing to be done for 'genomicsdb-tiledb/examples/CMakeFiles/tiledb_workspace_group_create.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +[ 79%] Built target tiledb_catching_errors +[ 80%] Built target tiledb_clear_delete_move +[ 81%] Built target tiledb_ls +[ 82%] Built target tiledb_metadata_consolidate +[ 82%] Built target tiledb_metadata_create +[ 83%] Built target tiledb_metadata_iterator +[ 83%] Built target tiledb_metadata_read +[ 82%] Built target tiledb_ls_workspaces +[ 83%] Built target tiledb_metadata_write +[ 84%] Built target tiledb_workspace_group_create +[ 86%] Built target tiledb_metadata_update +[ 86%] Built target tiledbgenomicsdb +[ 85%] Built target tiledb_metadata_primitive +make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend [ 86%] Built target genomicsdb make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/depend +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake "--color=" make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/depend -[ 86%] Built target tiledbgenomicsdb make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/depend make -f tools/CMakeFiles/create_genomicsdb_workspace.dir/build.make tools/CMakeFiles/create_genomicsdb_workspace.dir/depend make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" +make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend +make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" -make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/DependInfo.cmake "--color=" make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/depend -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/DependInfo.cmake "--color=" -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/DependInfo.cmake "--color=" -make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/depend +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/gt_mpi_gather.dir/DependInfo.cmake "--color=" +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/depend make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/depend cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf_histogram.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/genomicsdb-1.5.5 /build/reproducible-path/genomicsdb-1.5.5/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example /build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/DependInfo.cmake "--color=" +Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". +Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". +Dependencies file 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"/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/create_genomicsdb_workspace.dir/src/create_genomicsdb_workspace.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". +Dependencies file "tools/CMakeFiles/vcf2genomicsdb_init.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb_init.dir/compiler_depend.internal". +Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". +Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/ctest_main.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/create_genomicsdb_workspace.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/create_genomicsdb_workspace.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/src/test_genomicsdb_api.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". +Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_alleles_combiner.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "tools/CMakeFiles/consolidate_genomicsdb_array.dir/src/consolidate_genomicsdb_array.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/consolidate_genomicsdb_array.dir/compiler_depend.internal". -Dependencies file "src/test/cpp/CMakeFiles/api_tests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/api_tests.dir/compiler_depend.internal". Dependencies file "tools/CMakeFiles/vcf2genomicsdb.dir/src/vcf2genomicsdb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/compiler_depend.internal". +Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". +Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". 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Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_logger.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQuery.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target vcf2genomicsdb -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBQueryStream.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_mem_utils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target test_genomicsdb_demo -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_GenomicsDBUtils.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target vcf_histogram -Consolidate compiler generated dependencies of target vcfdiff Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_multid_vector.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target vcf2genomicsdb_init -Consolidate compiler generated dependencies of target test_genomicsdb_bcf_generator -Consolidate compiler generated dependencies of target api_tests -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/jni/src/genomicsdb_jni_init.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -Dependencies file "src/main/CMakeFiles/genomicsdbjni.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/main/CMakeFiles/genomicsdbjni.dir/compiler_depend.internal". -make -f tools/CMakeFiles/consolidate_genomicsdb_array.dir/build.make tools/CMakeFiles/consolidate_genomicsdb_array.dir/build -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target gt_mpi_gather -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build -Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target test_genomicsdb_importer +Dependencies file "tools/CMakeFiles/vcf2genomicsdb.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcf2genomicsdb.dir/compiler_depend.internal". make -f src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build.make src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/create_genomicsdb_workspace.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/src/test_genomicsdb_bcf_generator.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". +Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_non_diploid_mapper.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target genomicsdbjni +Dependencies file "example/CMakeFiles/test_genomicsdb_bcf_generator.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_bcf_generator.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target gt_mpi_gather +Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_pb.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/src/test_query_variants.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". -make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build Dependencies file "src/test/cpp/CMakeFiles/ctests.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/src/test/cpp/CMakeFiles/ctests.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target vcf_histogram make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f tools/CMakeFiles/vcf2genomicsdb_init.dir/build.make tools/CMakeFiles/vcf2genomicsdb_init.dir/build -make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build -make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build -make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build +Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/src/test_genomicsdb_importer.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/consolidate_genomicsdb_array.dir/build'. +make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb_init.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb.dir/build'. +Dependencies file "example/CMakeFiles/test_genomicsdb_importer.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/example/CMakeFiles/test_genomicsdb_importer.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target vcf2genomicsdb make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/test_genomicsdb_demo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f src/test/cpp/CMakeFiles/api_tests.dir/build.make src/test/cpp/CMakeFiles/api_tests.dir/build +make -f tools/CMakeFiles/gt_mpi_gather.dir/build.make tools/CMakeFiles/gt_mpi_gather.dir/build +make -f tools/CMakeFiles/vcf_histogram.dir/build.make tools/CMakeFiles/vcf_histogram.dir/build +Consolidate compiler generated dependencies of target test_genomicsdb_bcf_generator +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcf2genomicsdb.dir/build.make tools/CMakeFiles/vcf2genomicsdb.dir/build +Consolidate compiler generated dependencies of target test_genomicsdb_importer +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "tools/CMakeFiles/vcfdiff.dir/src/vcfdiff.cc.o.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/compiler_depend.internal". +make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +Dependencies file "tools/CMakeFiles/vcfdiff.dir/link.d" is newer than depends file "/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu/tools/CMakeFiles/vcfdiff.dir/compiler_depend.internal". make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/vcfdiff.dir/build'. +make[4]: Nothing to be done for 'tools/CMakeFiles/gt_mpi_gather.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'tools/CMakeFiles/vcf_histogram.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build.make example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb_init.dir/build'. +make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/api_tests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'tools/CMakeFiles/gt_mpi_gather.dir/build'. +make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdbjni.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target genomicsdbjni -make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build'. +make -f example/CMakeFiles/test_genomicsdb_importer.dir/build.make example/CMakeFiles/test_genomicsdb_importer.dir/build +[ 87%] Built target consolidate_genomicsdb_array +Consolidate compiler generated dependencies of target vcfdiff make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/api_tests.dir/build'. +make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_bcf_generator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make -f tools/CMakeFiles/vcfdiff.dir/build.make tools/CMakeFiles/vcfdiff.dir/build +[ 87%] Built target create_genomicsdb_workspace make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'example/CMakeFiles/test_genomicsdb_importer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for 'tools/CMakeFiles/vcfdiff.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make -f src/main/CMakeFiles/genomicsdbjni.dir/build.make src/main/CMakeFiles/genomicsdbjni.dir/build make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for 'src/main/CMakeFiles/genomicsdbjni.dir/build'. +make[4]: Nothing to be done for 'tools/CMakeFiles/vcf2genomicsdb.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' -[ 86%] Built target create_genomicsdb_workspace -[ 87%] Built target consolidate_genomicsdb_array -[ 88%] Built target vcf2genomicsdb -[ 88%] Built target test_genomicsdb_demo -[ 89%] Built target vcfdiff -[ 90%] Built target vcf_histogram -[ 90%] Built target vcf2genomicsdb_init -[ 91%] Built target test_genomicsdb_bcf_generator -[ 92%] Built target api_tests -[ 93%] Built target gt_mpi_gather -[ 94%] Built target test_genomicsdb_importer +[ 88%] Built target api_tests +[ 89%] Built target genomicsdbjni +[ 87%] Built target test_genomicsdb_demo Consolidate compiler generated dependencies of target ctests +[ 90%] Built target vcf2genomicsdb_init +[ 90%] Built target gt_mpi_gather make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make -f src/test/cpp/CMakeFiles/ctests.dir/build.make src/test/cpp/CMakeFiles/ctests.dir/build -[ 95%] Built target genomicsdbjni +[ 91%] Built target vcfdiff +[ 92%] Built target vcf_histogram +[ 93%] Built target vcf2genomicsdb +[ 94%] Built target test_genomicsdb_bcf_generator +[ 95%] Built target test_genomicsdb_importer make[4]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/test/cpp/CMakeFiles/ctests.dir/build'. make[4]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' @@ -9560,15 +9596,15 @@ ERROR StatusLogger Reconfiguration failed: No configuration found for '639fee48' at 'null' in 'null' GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB GenomicsDB: org.genomicsdb.importer.extensions.VidMapExtensions VCF header has 2 lines with the same field name test_field and header line type -- only the first line is considered by GenomicsDB -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.0032692619999999998,Cpu time(s),0.003283516 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.0013322490000000002,Cpu time(s),0.001441302 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),6.022E-4,Cpu time(s),7.00428E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.63661E-4,Cpu time(s),4.4376400000000003E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.99684E-4,Cpu time(s),4.72084E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),2.61366E-4,Cpu time(s),2.69077E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),2.4558E-4,Cpu time(s),2.20819E-4 -GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.0622E-4,Cpu time(s),3.74968E-4 -[INFO] Tests run: 46, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.065 s - in TestSuite +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.007736639,Cpu time(s),0.007255402 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.0046706149999999995,Cpu time(s),0.002848105 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),0.001033332,Cpu time(s),8.70937E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),6.31897E-4,Cpu time(s),6.85723E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),8.62552E-4,Cpu time(s),9.06909E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.41059E-4,Cpu time(s),4.55684E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),4.37615E-4,Cpu time(s),4.49585E-4 +GENOMICSDB_TIMER,GenomicsDB iterator next() timer,Wall-clock time(s),8.694600000000001E-4,Cpu time(s),7.209429999999999E-4 +[INFO] Tests run: 46, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 36.52 s - in TestSuite [INFO] [INFO] Results: [INFO] @@ -9577,8 +9613,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 40.775 s -[INFO] Finished at: 2025-10-30T22:44:51-12:00 +[INFO] Total time: 01:39 min +[INFO] Finished at: 2026-12-04T07:32:13+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' create-stamp debian/debhelper-build-stamp @@ -9607,15 +9643,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.438 s -[INFO] Finished at: 2025-10-30T22:44:53-12:00 +[INFO] Total time: 2.609 s +[INFO] Finished at: 2026-12-04T07:32:25+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibgenomicsdb-java --base-directory=/build/reproducible-path/genomicsdb-1.5.5 --non-explore Analysing pom.xml... mh_unpatchpoms -plibgenomicsdb-java make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' dh_auto_install -O--buildsystem=cmake -Nlibgenomicsdb-java - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/genomicsdb-1.5.5/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/genomicsdb-1.5.5/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/genomicsdb-1.5.5 -B/build/reproducible-path/genomicsdb-1.5.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -9627,33 +9663,33 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/klist.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hfile.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/ksort.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/thread_pool.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_defs.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kfunc.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/khash.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/klist.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcfutils.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_log.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcf_sweep.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/faidx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/synced_bcf_reader.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kseq.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kbitset.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_endian.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/knetfile.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcf.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/cram.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kroundup.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcfutils.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_defs.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/tbx.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kfunc.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/cram.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/faidx.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_log.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/sam.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_endian.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kstring.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcf_sweep.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hfile.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/khash_str2int.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/regidx.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/bgzf.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/ksort.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/vcf.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_os.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kseq.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kstring.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/khash_str2int.h --- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/thread_pool.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/sam.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/kbitset.h +-- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/htslib/hts_os.h -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.a -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.so -- Installing: /build/reproducible-path/genomicsdb-1.5.5/debian/tmp/usr/include/genomicsdb/tiledb/tiledb.h @@ -9700,7 +9736,7 @@ /build/reproducible-path/genomicsdb-1.5.5/debian/libgenomicsdb-jni/usr/lib/jni/libgenomicsdbjni.so: new RUNPATH: /usr/lib/x86_64-linux-gnu/genomicsdb make[1]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.5' jh_installjavadoc -O--buildsystem=cmake -Duplicate specification "A" for option "A" +Duplicate specification "author|A=s" for option "A" dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake @@ -9713,7 +9749,7 @@ jh_classpath -O--buildsystem=cmake Duplicate specification "version|V" for option "V" jh_manifest -O--buildsystem=cmake -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" jh_exec -O--buildsystem=cmake jh_depends -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake @@ -9739,34 +9775,34 @@ dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' +dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' +dpkg-shlibdeps: warning: debian/libgenomicsdb1/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so contains an unresolvable reference to symbol exp: it's probably a plugin +dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged -dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' -dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-hts.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libgenomicsdb-tiledb.so' -dpkg-shlibdeps: warning: debian/libgenomicsdb1/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so contains an unresolvable reference to symbol log: it's probably a plugin -dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libgenomicsdb-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libgenomicsdb-java: substitution variable ${maven:CompileDepends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'libgenomicsdb-java' in '../libgenomicsdb-java_1.5.5-2_all.deb'. -dpkg-deb: building package 'libgenomicsdb-jni-dbgsym' in '../libgenomicsdb-jni-dbgsym_1.5.5-2_amd64.deb'. dpkg-deb: building package 'libgenomicsdb-jni' in '../libgenomicsdb-jni_1.5.5-2_amd64.deb'. +dpkg-deb: building package 'libgenomicsdb-jni-dbgsym' in '../libgenomicsdb-jni-dbgsym_1.5.5-2_amd64.deb'. dpkg-deb: building package 'genomicsdb-tools' in '../genomicsdb-tools_1.5.5-2_amd64.deb'. -dpkg-deb: building package 'genomicsdb-tools-dbgsym' in '../genomicsdb-tools-dbgsym_1.5.5-2_amd64.deb'. -dpkg-deb: building package 'libgenomicsdb1' in '../libgenomicsdb1_1.5.5-2_amd64.deb'. dpkg-deb: building package 'libgenomicsdb1-dbgsym' in '../libgenomicsdb1-dbgsym_1.5.5-2_amd64.deb'. +dpkg-deb: building package 'libgenomicsdb1' in '../libgenomicsdb1_1.5.5-2_amd64.deb'. +dpkg-deb: building package 'libgenomicsdb-java' in '../libgenomicsdb-java_1.5.5-2_all.deb'. +dpkg-deb: building package 'genomicsdb-tools-dbgsym' in '../genomicsdb-tools-dbgsym_1.5.5-2_amd64.deb'. dpkg-deb: building package 'libgenomicsdb-dev' in '../libgenomicsdb-dev_1.5.5-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../genomicsdb_1.5.5-2_amd64.buildinfo dpkg-genchanges --build=binary -O../genomicsdb_1.5.5-2_amd64.changes @@ -9775,12 +9811,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25376/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4101407 and its subdirectories -I: Current time: Thu Oct 30 22:46:12 -12 2025 -I: pbuilder-time-stamp: 1761907572 +I: removing directory /srv/workspace/pbuilder/25376 and its subdirectories +I: Current time: Fri Dec 4 07:38:34 +14 2026 +I: pbuilder-time-stamp: 1796319514