Diff of the two buildlogs: -- --- b1/build.log 2025-10-28 20:13:27.008156380 +0000 +++ b2/build.log 2025-10-28 20:19:58.624508418 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Oct 28 08:09:28 -12 2025 -I: pbuilder-time-stamp: 1761682168 +I: Current time: Tue Dec 1 16:36:26 +14 2026 +I: pbuilder-time-stamp: 1796092586 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1646779/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 1 02:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='30d70092925847f98b7edf662123d49f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1646779' - PS1='# ' - PS2='> ' + INVOCATION_ID=e090e7e782904862909ac224c7a64a0f + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=527724 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ypVaULkt/pbuilderrc_ZXfD --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ypVaULkt/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.13.8-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ypVaULkt/pbuilderrc_vbG2 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ypVaULkt/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.13.8-1.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1646779/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -221,7 +253,7 @@ Get: 93 http://deb.debian.org/debian forky/main amd64 golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB] Get: 94 http://deb.debian.org/debian forky/main amd64 golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 95 http://deb.debian.org/debian forky/main amd64 golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 110 MB in 19s (5836 kB/s) +Fetched 110 MB in 14s (7731 kB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19902 files and directories currently installed.) @@ -542,8 +574,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Oct 28 20:12:41 UTC 2025. -Universal Time is now: Tue Oct 28 20:12:41 UTC 2025. +Local time is now: Tue Dec 1 02:41:37 UTC 2026. +Universal Time is now: Tue Dec 1 02:41:37 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -628,7 +660,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.8-1_source.changes +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.8-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.13.8-1 dpkg-buildpackage: info: source distribution unstable @@ -646,209 +682,209 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 40 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util -internal/itoa -internal/coverage/rtcov -internal/godebugs -internal/goos + cd _build && go install -trimpath -v -p 42 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util +unicode/utf16 +math/bits internal/profilerecord +cmp +crypto/internal/fips140/alias +internal/itoa +internal/asan internal/unsafeheader -vendor/golang.org/x/crypto/internal/alias internal/byteorder +vendor/golang.org/x/crypto/internal/alias +internal/msan +unicode +log/internal +internal/goarch +internal/godebugs github.com/klauspost/compress/internal/le -github.com/dsnet/compress/internal +internal/nettrace vendor/golang.org/x/crypto/cryptobyte/asn1 -github.com/ulikunitz/xz/internal/hash -log/internal -github.com/dsnet/compress/bzip2/internal/sais -unicode/utf16 -internal/asan -internal/msan container/list -internal/goarch -cmp +internal/goos +internal/coverage/rtcov +github.com/dsnet/compress/bzip2/internal/sais +github.com/ulikunitz/xz/internal/hash unicode/utf8 -internal/nettrace -crypto/internal/fips140/alias -math/bits +github.com/dsnet/compress/internal internal/goexperiment -unicode crypto/internal/boring/sig -internal/runtime/syscall -internal/cpu -sync/atomic github.com/klauspost/compress/internal/cpuinfo +internal/runtime/syscall internal/runtime/atomic -crypto/internal/fips140deps/byteorder +sync/atomic +internal/cpu crypto/internal/fips140/subtle -github.com/elliotwutingfeng/asciiset +crypto/internal/fips140deps/byteorder internal/runtime/math -internal/runtime/sys internal/chacha8rand internal/abi +internal/runtime/sys +github.com/elliotwutingfeng/asciiset +internal/runtime/exithook crypto/internal/fips140deps/cpu internal/bytealg math -internal/runtime/exithook internal/stringslite +github.com/klauspost/compress internal/race internal/sync internal/runtime/maps -github.com/klauspost/compress runtime -crypto/subtle -weak iter +weak +crypto/subtle internal/reflectlite sync maps slices errors sort -internal/bisect -internal/singleflight -internal/testlog -unique -runtime/cgo internal/oserror path vendor/golang.org/x/net/dns/dnsmessage -io math/rand/v2 strconv +internal/singleflight +unique +io +internal/bisect +internal/testlog +syscall +runtime/cgo internal/godebug bytes -syscall -internal/saferio hash -crypto/internal/randutil strings -hash/crc64 -hash/crc32 +internal/saferio +crypto/internal/randutil crypto -net/netip +hash/crc32 +hash/crc64 reflect +net/netip +vendor/golang.org/x/text/transform crypto/internal/fips140deps/godebug math/rand -vendor/golang.org/x/text/transform github.com/twotwotwo/sorts +github.com/twotwotwo/sorts/sortutil +github.com/shenwei356/bio/util +bufio github.com/dsnet/compress/internal/errors -net/http/internal/ascii -crypto/internal/fips140 crypto/internal/impl -bufio +crypto/internal/fips140 +net/http/internal/ascii regexp/syntax -github.com/twotwotwo/sorts/sortutil -github.com/shenwei356/bio/util -crypto/tls/internal/fips140tls crypto/internal/fips140/sha256 -crypto/internal/fips140/sha512 crypto/internal/fips140/sha3 -internal/syscall/execenv +crypto/tls/internal/fips140tls +crypto/internal/fips140/sha512 internal/syscall/unix time +internal/syscall/execenv github.com/dsnet/compress +regexp crypto/sha3 crypto/internal/fips140/hmac +internal/fmtsort +context +encoding/binary +io/fs +internal/poll crypto/internal/fips140/check crypto/internal/fips140hash crypto/internal/fips140/edwards25519/field -crypto/internal/fips140/hkdf crypto/internal/fips140/bigmod crypto/internal/fips140/aes +crypto/internal/fips140/hkdf crypto/internal/fips140/tls12 crypto/internal/fips140/nistec/fiat crypto/internal/fips140/tls13 +internal/filepathlite crypto/internal/fips140/edwards25519 -regexp -internal/fmtsort -encoding/binary -io/fs -context -internal/poll -encoding/base64 -vendor/golang.org/x/crypto/internal/poly1305 -github.com/zeebo/wyhash +crypto/internal/fips140/nistec github.com/cespare/xxhash +vendor/golang.org/x/crypto/internal/poly1305 github.com/klauspost/compress/internal/snapref +github.com/zeebo/wyhash +encoding/base64 golang.org/x/sys/unix -internal/filepathlite -encoding/pem -crypto/internal/fips140/nistec os -crypto/internal/sysrand +encoding/pem path/filepath fmt vendor/golang.org/x/sys/cpu +crypto/internal/sysrand +github.com/edsrzf/mmap-go crypto/internal/entropy -crypto/internal/fips140/drbg os/exec -crypto/internal/fips140only -crypto/internal/fips140/ed25519 -crypto/internal/fips140/ecdh -crypto/internal/fips140/ecdsa -crypto/internal/fips140/aes/gcm -crypto/internal/fips140/mlkem -crypto/internal/fips140/rsa -crypto/rc4 -crypto/md5 -github.com/edsrzf/mmap-go -net -crypto/cipher -github.com/dsnet/compress/internal/prefix +crypto/internal/fips140/drbg encoding/hex log -github.com/ulikunitz/xz/internal/xlog runtime/debug +github.com/shenwei356/util/byteutil +github.com/dsnet/compress/internal/prefix +compress/flate github.com/klauspost/compress/fse -mime github.com/shenwei356/bio/seqio/fai -vendor/golang.org/x/net/http2/hpack -mime/quotedprintable +github.com/ulikunitz/xz/internal/xlog net/url net/http/internal -compress/flate github.com/will-rowe/nthash -os/user -github.com/shenwei356/util/byteutil +mime +vendor/golang.org/x/net/http2/hpack +mime/quotedprintable math/big vendor/golang.org/x/text/unicode/norm -crypto/internal/boring -vendor/golang.org/x/crypto/chacha20 -crypto/des -github.com/shenwei356/bio/seq -crypto/sha256 -crypto/aes -crypto/sha512 -crypto/ecdh -crypto/hmac -crypto/sha1 -github.com/ulikunitz/xz/lzma +crypto/internal/fips140only +crypto/internal/fips140/ecdh +crypto/internal/fips140/ecdsa +crypto/internal/fips140/aes/gcm +crypto/internal/fips140/ed25519 +crypto/internal/fips140/mlkem +crypto/internal/fips140/rsa vendor/golang.org/x/text/unicode/bidi -vendor/golang.org/x/crypto/chacha20poly1305 +crypto/rc4 +crypto/md5 +github.com/ulikunitz/xz/lzma github.com/klauspost/compress/huff0 github.com/dsnet/compress/bzip2 compress/gzip github.com/klauspost/compress/flate -github.com/shenwei356/bio/sketches -vendor/golang.org/x/text/secure/bidirule -vendor/golang.org/x/net/idna -github.com/ulikunitz/xz -crypto/internal/boring/bbig +github.com/shenwei356/bio/seq crypto/dsa crypto/elliptic encoding/asn1 +github.com/shenwei356/bio/sketches +vendor/golang.org/x/text/secure/bidirule +crypto/cipher +os/user +net +vendor/golang.org/x/crypto/cryptobyte +crypto/x509/pkix +vendor/golang.org/x/net/idna +github.com/klauspost/pgzip +crypto/des +crypto/internal/boring +vendor/golang.org/x/crypto/chacha20 +crypto/sha256 +crypto/aes crypto/rand -crypto/internal/hpke +crypto/ecdh +crypto/internal/boring/bbig +crypto/sha512 +crypto/hmac +crypto/sha1 +github.com/ulikunitz/xz +vendor/golang.org/x/crypto/chacha20poly1305 crypto/ed25519 crypto/rsa github.com/klauspost/compress/zstd -github.com/klauspost/pgzip -crypto/x509/pkix -vendor/golang.org/x/crypto/cryptobyte crypto/ecdsa -net/textproto +crypto/internal/hpke vendor/golang.org/x/net/http/httpproxy +net/textproto crypto/x509 vendor/golang.org/x/net/http/httpguts mime/multipart @@ -861,7 +897,7 @@ github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/featio/gtf dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 40 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 42 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF {140 Twinscan inter 5141 8522 0xc000124500 []} {140 Twinscan inter_CNS 8523 9711 0xc000124520 []} @@ -879,27 +915,27 @@ {140 Twinscan 5UTR 73223 73504 0xc0001245e0 []} --- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0xc00021e060 []} -{381 Twinscan exon 300 401 0xc00021e080 []} -{381 Twinscan CDS 380 401 0xc00021e090 0xc000214080 []} -{381 Twinscan exon 501 650 0xc00021e0a0 []} -{381 Twinscan CDS 501 650 0xc00021e0b0 0xc000214088 []} -{381 Twinscan exon 700 800 0xc00021e0c0 []} -{381 Twinscan CDS 700 707 0xc00021e0d0 0xc000214090 []} -{381 Twinscan exon 900 1000 0xc00021e0e0 []} -{381 Twinscan start_codon 380 382 0xc00021e0f0 0xc000214098 []} -{381 Twinscan stop_codon 708 710 0xc00021e100 0xc0002140a0 []} +{381 Twinscan exon 150 200 0xc000124650 []} +{381 Twinscan exon 300 401 0xc000124670 []} +{381 Twinscan CDS 380 401 0xc000124680 0xc00011a370 []} +{381 Twinscan exon 501 650 0xc000124690 []} +{381 Twinscan CDS 501 650 0xc0001246a0 0xc00011a378 []} +{381 Twinscan exon 700 800 0xc0001246b0 []} +{381 Twinscan CDS 700 707 0xc0001246c0 0xc00011a380 []} +{381 Twinscan exon 900 1000 0xc0001246d0 []} +{381 Twinscan start_codon 380 382 0xc0001246e0 0xc00011a388 []} +{381 Twinscan stop_codon 708 710 0xc0001246f0 0xc00011a390 []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0xc00021e170 0xc000214110 []} -{NC_002516.2 genbank CDS 6261828 6263564 0xc00021e190 0xc000214118 []} -{NC_002516.2 genbank gene 6263805 6264212 0xc00021e1a0 0xc000214120 []} -{NC_002516.2 genbank CDS 6263805 6264212 0xc00021e1b0 0xc000214128 []} -{NC_002516.2 genbank gene 6264227 6264361 0xc00021e1c0 0xc000214130 []} -{NC_002516.2 genbank CDS 6264227 6264361 0xc00021e1d0 0xc000214138 []} +{NC_002516.2 genbank gene 6261828 6263564 0xc000124760 0xc00011a400 []} +{NC_002516.2 genbank CDS 6261828 6263564 0xc000124780 0xc00011a408 []} +{NC_002516.2 genbank gene 6263805 6264212 0xc000124790 0xc00011a410 []} +{NC_002516.2 genbank CDS 6263805 6264212 0xc0001247a0 0xc00011a418 []} +{NC_002516.2 genbank gene 6264227 6264361 0xc0001247b0 0xc00011a420 []} +{NC_002516.2 genbank CDS 6264227 6264361 0xc0001247c0 0xc00011a428 []} --- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.006s +ok github.com/shenwei356/bio/featio/gtf 0.017s === RUN TestAlphabet --- PASS: TestAlphabet (0.00s) === RUN TestAlphabet2 @@ -923,39 +959,39 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.032s +ok github.com/shenwei356/bio/seq 0.059s === RUN TestFastaReader --- PASS: TestFastaReader (0.00s) === RUN TestFastaReaderNotMapWholeFile --- PASS: TestFastaReaderNotMapWholeFile (0.00s) === RUN TestFastaReader2NotMapWholeFile ---- PASS: TestFastaReader2NotMapWholeFile (0.02s) +--- PASS: TestFastaReader2NotMapWholeFile (0.03s) === RUN TestFastaReader2 --- PASS: TestFastaReader2 (0.02s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.162s +ok github.com/shenwei356/bio/seqio/fai 0.128s === RUN TestFastaReader2 --- PASS: TestFastaReader2 (0.01s) === RUN TestFastaReader3 --- PASS: TestFastaReader3 (0.00s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.02s) +--- PASS: TestFastqReadern (0.03s) === RUN TestFastaReader ---- PASS: TestFastaReader (0.02s) +--- PASS: TestFastaReader (0.03s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.01s) +--- PASS: TestFastqReader (0.02s) === RUN TestFastqReader2 ---- PASS: TestFastqReader2 (0.09s) +--- PASS: TestFastqReader2 (0.01s) === RUN TestFastqReader3 ---- PASS: TestFastqReader3 (0.05s) +--- PASS: TestFastqReader3 (0.02s) === RUN TestBlankFile ---- PASS: TestBlankFile (0.09s) +--- PASS: TestBlankFile (0.01s) === RUN TestBlankFile2 ---- PASS: TestBlankFile2 (0.04s) +--- PASS: TestBlankFile2 (0.01s) === RUN TestEmptyFile ---- PASS: TestEmptyFile (0.01s) +--- PASS: TestEmptyFile (0.02s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.362s +ok github.com/shenwei356/bio/seqio/fastx 0.278s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -971,15 +1007,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.020s +ok github.com/shenwei356/bio/sketches 0.065s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.005s +ok github.com/shenwei356/bio/taxdump 0.017s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.003s +ok github.com/shenwei356/bio/util 0.016s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -1011,12 +1047,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/527724/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1646779 and its subdirectories -I: Current time: Tue Oct 28 08:13:26 -12 2025 -I: pbuilder-time-stamp: 1761682406 +I: removing directory /srv/workspace/pbuilder/527724 and its subdirectories +I: Current time: Tue Dec 1 16:42:57 +14 2026 +I: pbuilder-time-stamp: 1796092977