Diff of the two buildlogs: -- --- b1/build.log 2025-11-05 05:26:07.247631529 +0000 +++ b2/build.log 2025-11-05 05:29:55.427901166 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 4 17:21:29 -12 2025 -I: pbuilder-time-stamp: 1762320089 +I: Current time: Wed Dec 9 01:49:09 +14 2026 +I: pbuilder-time-stamp: 1796730549 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying set-zlib-after-setting-default-libs.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/136013/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 8 11:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7d0059a12b9341bdbcebaa8bd3476356' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='136013' - PS1='# ' - PS2='> ' + INVOCATION_ID=4b2872139746442c9cc5611352bd38dc + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3957969 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mLGsWqx2/pbuilderrc_u383 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mLGsWqx2/b1 --logfile b1/build.log hyphy_2.5.69+dfsg-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mLGsWqx2/pbuilderrc_MDjq --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mLGsWqx2/b2 --logfile b2/build.log hyphy_2.5.69+dfsg-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/136013/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -307,7 +339,7 @@ Get: 180 http://deb.debian.org/debian forky/main amd64 python3.13-dev amd64 3.13.9-1 [504 kB] Get: 181 http://deb.debian.org/debian forky/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 182 http://deb.debian.org/debian forky/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] -Fetched 144 MB in 4s (34.3 MB/s) +Fetched 144 MB in 6s (24.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -899,8 +931,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Nov 5 05:24:15 UTC 2025. -Universal Time is now: Wed Nov 5 05:24:15 UTC 2025. +Local time is now: Tue Dec 8 11:50:19 UTC 2026. +Universal Time is now: Tue Dec 8 11:50:19 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -1072,7 +1104,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/hyphy-2.5.69+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hyphy_2.5.69+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/hyphy-2.5.69+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../hyphy_2.5.69+dfsg-2_source.changes dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.69+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1096,7 +1132,7 @@ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info @@ -1143,11 +1179,12 @@ CMakeLists.txt:701 (makeLink) This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (1.9s) --- Generating done (0.0s) +-- Configuring done (2.4s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR @@ -1161,7 +1198,7 @@ -- Build files have been written to: /build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu dh_auto_configure --builddirectory obj-avx -- -DINSTALL_PREFIX=/usr -DNOAVX=OFF -DNOSSE3=OFF - cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=OFF -DNOSSE3=OFF .. + cd obj-avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DINSTALL_PREFIX=/usr -DNOAVX=OFF -DNOSSE3=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info @@ -1210,11 +1247,12 @@ CMakeLists.txt:701 (makeLink) This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (3.0s) --- Generating done (0.0s) +-- Configuring done (5.1s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR @@ -1228,7 +1266,7 @@ -- Build files have been written to: /build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx dh_auto_configure --builddirectory obj-sse3 -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=OFF - cd obj-sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=OFF .. + cd obj-sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=OFF .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info @@ -1275,11 +1313,12 @@ CMakeLists.txt:701 (makeLink) This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (2.3s) --- Generating done (0.0s) +-- Configuring done (3.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR @@ -1296,7 +1335,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' dh_auto_build -- MP MPI - cd obj-x86_64-linux-gnu && make -j12 INSTALL="install --strip-program=true" MP MPI VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j16 INSTALL="install --strip-program=true" MP MPI VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP @@ -1311,44 +1350,44 @@ make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o [ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -[ 10%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -MF CMakeFiles/hyphy.dir/src/core/alignment.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/alignment.cpp -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/baseobj.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o -MF CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_file_wrapper.cpp -[ 65%] Building CXX object CMakeFiles/hyphy.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o -MF CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o.d -o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bgm2.cpp +[ 90%] Building CXX object CMakeFiles/hyphy.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/hyphy.dir/src/new/scfg.cpp.o -MF CMakeFiles/hyphy.dir/src/new/scfg.cpp.o.d -o CMakeFiles/hyphy.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/scfg.cpp [ 90%] Building CXX object CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/batchlanruntime.cpp -[ 20%] Building CXX object 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/dataset_filter_numeric.cpp @@ -1523,8 +1562,8 @@ [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/global_object_lists.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/hyFile.cpp @@ -1561,16 +1600,16 @@ [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/stack.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/string_buffer.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/strings.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/time_difference.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/topology.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/topology.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/translation_table.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree.cpp @@ -1625,7 +1664,7 @@ make[3]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' dh_auto_build --builddirectory obj-avx -- MP MPI - cd obj-avx && make -j12 INSTALL="install --strip-program=true" MP MPI VERBOSE=1 + cd obj-avx && make -j16 INSTALL="install --strip-program=true" MP MPI VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP @@ -1640,48 +1679,48 @@ make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o +[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -MF 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o -MF CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/tree_evaluator.cpp -[ 75%] Building CXX object CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" 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CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefuncocl.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o @@ -1873,10 +1912,10 @@ /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS 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-I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/operation.cpp +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS 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-D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -c 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/vector.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bayesgraph.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bayesgraph2.cpp @@ -1926,9 +1965,9 @@ [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o 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CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/bgm2.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/scfg.cpp [ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/utils/hyphyunixutils.cpp -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/scfg.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_AVX_INTRINSICS -D_SLKP_USE_FMA3_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -mavx2 -mfma -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib/mersenne_twister.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o @@ -1954,7 +1993,7 @@ make[3]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-avx' dh_auto_build --builddirectory obj-sse3 -- MP MPI - cd obj-sse3 && make -j12 INSTALL="install --strip-program=true" MP MPI VERBOSE=1 + cd obj-sse3 && make -j16 INSTALL="install --strip-program=true" MP MPI VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP @@ -1969,58 +2008,58 @@ make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/build make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -[ 0%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ 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Building CXX object CMakeFiles/hyphy.dir/src/core/constant.cpp.o +[ 20%] Building CXX object CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/alignment.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllistxl_iterator.cpp.o +[ 5%] Building CXX object CMakeFiles/hyphy.dir/src/core/category.cpp.o +[ 20%] Building CXX object CMakeFiles/hyphy.dir/src/core/avllist.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include 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-Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc.cpp -[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefunc2.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/core/likefuncocl.cpp +[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o +/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -Weffc++ -Wextra -Wall -MD -MT CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/new/scfg.cpp -[ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/utils/hyphyunixutils.cpp [ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.69+dfsg/src/new/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.69+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2 -Wall -std=c++14 -msse4.1 -g -w -Weffc++ -Wextra -Wall -fopenmp -MD -MT CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o -c /build/reproducible-path/hyphy-2.5.69+dfsg/src/contrib/mersenne_twister.cpp @@ -2283,345 +2322,11 @@ make[3]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-sse3' make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg' -set -e ; for SIMD in avx sse3 ; do \ - if lscpu | grep -q ${SIMD} ; then \ - find "obj-${SIMD}/" \ - -not -path "*/CMakeFiles/*" \ - -type f,l \ - -executable \ - -exec cp -v '{}' . \; && \ - ./run_unit_tests.sh ; \ - fi ; \ -done -'obj-avx/HYPHYMPI' -> './HYPHYMPI' -'obj-avx/HYPHYMP' -> './HYPHYMP' -'obj-avx/hyphy' -> './hyphy' -./tests/hbltests/UnitTests/HBLCommands/Abs.bf -./tests/hbltests/UnitTests/HBLCommands/Add.bf -./tests/hbltests/UnitTests/HBLCommands/Ampersand.bf -./tests/hbltests/UnitTests/HBLCommands/Arctan.bf -./tests/hbltests/UnitTests/HBLCommands/BayesianGraphicalModel.bf -./tests/hbltests/UnitTests/HBLCommands/Beta.bf -./tests/hbltests/UnitTests/HBLCommands/BranchLength.bf -./tests/hbltests/UnitTests/HBLCommands/Branchcount.bf -./tests/hbltests/UnitTests/HBLCommands/Branchname.bf -./tests/hbltests/UnitTests/HBLCommands/CChi2.bf -./tests/hbltests/UnitTests/HBLCommands/CGammaDist.bf -./tests/hbltests/UnitTests/HBLCommands/Call.bf -./tests/hbltests/UnitTests/HBLCommands/Caret.bf -./tests/hbltests/UnitTests/HBLCommands/Category.bf -./tests/hbltests/UnitTests/HBLCommands/Columns.bf -./tests/hbltests/UnitTests/HBLCommands/Continue.bf -./tests/hbltests/UnitTests/HBLCommands/Cos.bf -./tests/hbltests/UnitTests/HBLCommands/DataSet.bf -./tests/hbltests/UnitTests/HBLCommands/DataSetFilter.bf -./tests/hbltests/UnitTests/HBLCommands/DeleteObject.bf -./tests/hbltests/UnitTests/HBLCommands/Differentiate.bf -./tests/hbltests/UnitTests/HBLCommands/Divide.bf -./tests/hbltests/UnitTests/HBLCommands/Do.bf -./tests/hbltests/UnitTests/HBLCommands/DoSQL.bf -./tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleEquals.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf -./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf -./tests/hbltests/UnitTests/HBLCommands/Erf.bf -./tests/hbltests/UnitTests/HBLCommands/Eval.bf -./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf -./tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf -./tests/hbltests/UnitTests/HBLCommands/ExecuteAFile.bf -./tests/hbltests/UnitTests/HBLCommands/ExecuteCommands.bf -./tests/hbltests/UnitTests/HBLCommands/Exp.bf -./tests/hbltests/UnitTests/HBLCommands/Export.bf -./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf -./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf -./tests/hbltests/UnitTests/HBLCommands/For.bf -./tests/hbltests/UnitTests/HBLCommands/Format.bf -./tests/hbltests/UnitTests/HBLCommands/Function.bf -./tests/hbltests/UnitTests/HBLCommands/Gamma.bf -./tests/hbltests/UnitTests/HBLCommands/GammaDist.bf -./tests/hbltests/UnitTests/HBLCommands/GetDataInfo.bf -./tests/hbltests/UnitTests/HBLCommands/GetInformation.bf -./tests/hbltests/UnitTests/HBLCommands/GetString.bf -./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf -./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf -./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf -./tests/hbltests/UnitTests/HBLCommands/IBeta.bf -./tests/hbltests/UnitTests/HBLCommands/IGamma.bf -./tests/hbltests/UnitTests/HBLCommands/If.bf -./tests/hbltests/UnitTests/HBLCommands/Integrate.bf -./tests/hbltests/UnitTests/HBLCommands/Inverse.bf -./tests/hbltests/UnitTests/HBLCommands/JSON.bf -./tests/hbltests/UnitTests/HBLCommands/Join.bf -./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf -./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf -./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf -./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf -./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf -./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf -./tests/hbltests/UnitTests/HBLCommands/Log.bf -./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf -./tests/hbltests/UnitTests/HBLCommands/Max.bf -./tests/hbltests/UnitTests/HBLCommands/Min.bf -./tests/hbltests/UnitTests/HBLCommands/Model.bf -./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf -./tests/hbltests/UnitTests/HBLCommands/Random.bf -./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf -./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf -./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf -./tests/hbltests/UnitTests/HBLCommands/Return.bf -./tests/hbltests/UnitTests/HBLCommands/Rows.bf -./tests/hbltests/UnitTests/HBLCommands/Simplex.bf -./tests/hbltests/UnitTests/HBLCommands/Simplify.bf -./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf -./tests/hbltests/UnitTests/HBLCommands/Sin.bf -./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf -./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf -./tests/hbltests/UnitTests/HBLCommands/Subtract.bf -./tests/hbltests/UnitTests/HBLCommands/Tan.bf -./tests/hbltests/UnitTests/HBLCommands/Time.bf -./tests/hbltests/UnitTests/HBLCommands/TipCount.bf -./tests/hbltests/UnitTests/HBLCommands/TipName.bf -./tests/hbltests/UnitTests/HBLCommands/Topology.bf -./tests/hbltests/UnitTests/HBLCommands/Transpose.bf -./tests/hbltests/UnitTests/HBLCommands/Tree.bf -./tests/hbltests/UnitTests/HBLCommands/Type.bf -./tests/hbltests/UnitTests/HBLCommands/While.bf -./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf -./tests/hbltests/UnitTests/HBLCommands/assert.bf -./tests/hbltests/UnitTests/HBLCommands/break.bf -./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf -./tests/hbltests/UnitTests/HBLCommands/include.bf -./tests/hbltests/UnitTests/HBLCommands/lfunction.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf -./tests/hbltests/UnitTests/HBLCommands/namespace.bf -\n\n------------------------ALL TEST PASSED------------------------------------\n -'obj-sse3/HYPHYMPI' -> './HYPHYMPI' -'obj-sse3/HYPHYMP' -> './HYPHYMP' -'obj-sse3/hyphy' -> './hyphy' -./tests/hbltests/UnitTests/HBLCommands/Abs.bf -./tests/hbltests/UnitTests/HBLCommands/Add.bf -./tests/hbltests/UnitTests/HBLCommands/Ampersand.bf -./tests/hbltests/UnitTests/HBLCommands/Arctan.bf -./tests/hbltests/UnitTests/HBLCommands/BayesianGraphicalModel.bf -./tests/hbltests/UnitTests/HBLCommands/Beta.bf -./tests/hbltests/UnitTests/HBLCommands/BranchLength.bf -./tests/hbltests/UnitTests/HBLCommands/Branchcount.bf -./tests/hbltests/UnitTests/HBLCommands/Branchname.bf -./tests/hbltests/UnitTests/HBLCommands/CChi2.bf -./tests/hbltests/UnitTests/HBLCommands/CGammaDist.bf -./tests/hbltests/UnitTests/HBLCommands/Call.bf -./tests/hbltests/UnitTests/HBLCommands/Caret.bf -./tests/hbltests/UnitTests/HBLCommands/Category.bf -./tests/hbltests/UnitTests/HBLCommands/Columns.bf -./tests/hbltests/UnitTests/HBLCommands/Continue.bf -./tests/hbltests/UnitTests/HBLCommands/Cos.bf -./tests/hbltests/UnitTests/HBLCommands/DataSet.bf -./tests/hbltests/UnitTests/HBLCommands/DataSetFilter.bf -./tests/hbltests/UnitTests/HBLCommands/DeleteObject.bf -./tests/hbltests/UnitTests/HBLCommands/Differentiate.bf -./tests/hbltests/UnitTests/HBLCommands/Divide.bf -./tests/hbltests/UnitTests/HBLCommands/Do.bf -./tests/hbltests/UnitTests/HBLCommands/DoSQL.bf -./tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleEquals.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf -./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf -./tests/hbltests/UnitTests/HBLCommands/Erf.bf -./tests/hbltests/UnitTests/HBLCommands/Eval.bf -./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf -./tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf -./tests/hbltests/UnitTests/HBLCommands/ExecuteAFile.bf -./tests/hbltests/UnitTests/HBLCommands/ExecuteCommands.bf -./tests/hbltests/UnitTests/HBLCommands/Exp.bf -./tests/hbltests/UnitTests/HBLCommands/Export.bf -./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf -./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf -./tests/hbltests/UnitTests/HBLCommands/For.bf -./tests/hbltests/UnitTests/HBLCommands/Format.bf -./tests/hbltests/UnitTests/HBLCommands/Function.bf -./tests/hbltests/UnitTests/HBLCommands/Gamma.bf -./tests/hbltests/UnitTests/HBLCommands/GammaDist.bf -./tests/hbltests/UnitTests/HBLCommands/GetDataInfo.bf -./tests/hbltests/UnitTests/HBLCommands/GetInformation.bf -./tests/hbltests/UnitTests/HBLCommands/GetString.bf -./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf -./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf -./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf -./tests/hbltests/UnitTests/HBLCommands/IBeta.bf -./tests/hbltests/UnitTests/HBLCommands/IGamma.bf -./tests/hbltests/UnitTests/HBLCommands/If.bf -./tests/hbltests/UnitTests/HBLCommands/Integrate.bf -./tests/hbltests/UnitTests/HBLCommands/Inverse.bf -./tests/hbltests/UnitTests/HBLCommands/JSON.bf -./tests/hbltests/UnitTests/HBLCommands/Join.bf -./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf -./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf -./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf -./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf -./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf -./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf -./tests/hbltests/UnitTests/HBLCommands/Log.bf -./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf -./tests/hbltests/UnitTests/HBLCommands/Max.bf -./tests/hbltests/UnitTests/HBLCommands/Min.bf -./tests/hbltests/UnitTests/HBLCommands/Model.bf -./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf -./tests/hbltests/UnitTests/HBLCommands/Random.bf -./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf -./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf -./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf -./tests/hbltests/UnitTests/HBLCommands/Return.bf -./tests/hbltests/UnitTests/HBLCommands/Rows.bf -./tests/hbltests/UnitTests/HBLCommands/Simplex.bf -./tests/hbltests/UnitTests/HBLCommands/Simplify.bf -./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf -./tests/hbltests/UnitTests/HBLCommands/Sin.bf -./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf -./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf -./tests/hbltests/UnitTests/HBLCommands/Subtract.bf -./tests/hbltests/UnitTests/HBLCommands/Tan.bf -./tests/hbltests/UnitTests/HBLCommands/Time.bf -./tests/hbltests/UnitTests/HBLCommands/TipCount.bf -./tests/hbltests/UnitTests/HBLCommands/TipName.bf -./tests/hbltests/UnitTests/HBLCommands/Topology.bf -./tests/hbltests/UnitTests/HBLCommands/Transpose.bf -./tests/hbltests/UnitTests/HBLCommands/Tree.bf -./tests/hbltests/UnitTests/HBLCommands/Type.bf -./tests/hbltests/UnitTests/HBLCommands/While.bf -./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf -./tests/hbltests/UnitTests/HBLCommands/assert.bf -./tests/hbltests/UnitTests/HBLCommands/break.bf -./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf -./tests/hbltests/UnitTests/HBLCommands/include.bf -./tests/hbltests/UnitTests/HBLCommands/lfunction.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf -./tests/hbltests/UnitTests/HBLCommands/namespace.bf -\n\n------------------------ALL TEST PASSED------------------------------------\n -find "obj-x86_64-linux-gnu/" \ - -not -path "*/CMakeFiles/*" \ - -type f,l \ - -executable \ - -exec cp -v '{}' . \; -'obj-x86_64-linux-gnu/HYPHYMPI' -> './HYPHYMPI' -'obj-x86_64-linux-gnu/HYPHYMP' -> './HYPHYMP' -'obj-x86_64-linux-gnu/hyphy' -> './hyphy' -./run_unit_tests.sh -./tests/hbltests/UnitTests/HBLCommands/Abs.bf -./tests/hbltests/UnitTests/HBLCommands/Add.bf -./tests/hbltests/UnitTests/HBLCommands/Ampersand.bf -./tests/hbltests/UnitTests/HBLCommands/Arctan.bf -./tests/hbltests/UnitTests/HBLCommands/BayesianGraphicalModel.bf -./tests/hbltests/UnitTests/HBLCommands/Beta.bf -./tests/hbltests/UnitTests/HBLCommands/BranchLength.bf -./tests/hbltests/UnitTests/HBLCommands/Branchcount.bf -./tests/hbltests/UnitTests/HBLCommands/Branchname.bf -./tests/hbltests/UnitTests/HBLCommands/CChi2.bf -./tests/hbltests/UnitTests/HBLCommands/CGammaDist.bf -./tests/hbltests/UnitTests/HBLCommands/Call.bf -./tests/hbltests/UnitTests/HBLCommands/Caret.bf -./tests/hbltests/UnitTests/HBLCommands/Category.bf -./tests/hbltests/UnitTests/HBLCommands/Columns.bf -./tests/hbltests/UnitTests/HBLCommands/Continue.bf -./tests/hbltests/UnitTests/HBLCommands/Cos.bf -./tests/hbltests/UnitTests/HBLCommands/DataSet.bf -./tests/hbltests/UnitTests/HBLCommands/DataSetFilter.bf -./tests/hbltests/UnitTests/HBLCommands/DeleteObject.bf -./tests/hbltests/UnitTests/HBLCommands/Differentiate.bf -./tests/hbltests/UnitTests/HBLCommands/Divide.bf -./tests/hbltests/UnitTests/HBLCommands/Do.bf -./tests/hbltests/UnitTests/HBLCommands/DoSQL.bf -./tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleEquals.bf -./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf -./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf -./tests/hbltests/UnitTests/HBLCommands/Erf.bf -./tests/hbltests/UnitTests/HBLCommands/Eval.bf -./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf -./tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf -./tests/hbltests/UnitTests/HBLCommands/ExecuteAFile.bf -./tests/hbltests/UnitTests/HBLCommands/ExecuteCommands.bf -./tests/hbltests/UnitTests/HBLCommands/Exp.bf -./tests/hbltests/UnitTests/HBLCommands/Export.bf -./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf -./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf -./tests/hbltests/UnitTests/HBLCommands/For.bf -./tests/hbltests/UnitTests/HBLCommands/Format.bf -./tests/hbltests/UnitTests/HBLCommands/Function.bf -./tests/hbltests/UnitTests/HBLCommands/Gamma.bf -./tests/hbltests/UnitTests/HBLCommands/GammaDist.bf -./tests/hbltests/UnitTests/HBLCommands/GetDataInfo.bf -./tests/hbltests/UnitTests/HBLCommands/GetInformation.bf -./tests/hbltests/UnitTests/HBLCommands/GetString.bf -./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf -./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf -./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf -./tests/hbltests/UnitTests/HBLCommands/IBeta.bf -./tests/hbltests/UnitTests/HBLCommands/IGamma.bf -./tests/hbltests/UnitTests/HBLCommands/If.bf -./tests/hbltests/UnitTests/HBLCommands/Integrate.bf -./tests/hbltests/UnitTests/HBLCommands/Inverse.bf -./tests/hbltests/UnitTests/HBLCommands/JSON.bf -./tests/hbltests/UnitTests/HBLCommands/Join.bf -./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf -./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf -./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf -./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf -./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf -./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf -./tests/hbltests/UnitTests/HBLCommands/Log.bf -./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf -./tests/hbltests/UnitTests/HBLCommands/Max.bf -./tests/hbltests/UnitTests/HBLCommands/Min.bf -./tests/hbltests/UnitTests/HBLCommands/Model.bf -./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf -./tests/hbltests/UnitTests/HBLCommands/Random.bf -./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf -./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf -./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf -./tests/hbltests/UnitTests/HBLCommands/Return.bf -./tests/hbltests/UnitTests/HBLCommands/Rows.bf -./tests/hbltests/UnitTests/HBLCommands/Simplex.bf -./tests/hbltests/UnitTests/HBLCommands/Simplify.bf -./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf -./tests/hbltests/UnitTests/HBLCommands/Sin.bf -./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf -./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf -./tests/hbltests/UnitTests/HBLCommands/Subtract.bf -./tests/hbltests/UnitTests/HBLCommands/Tan.bf -./tests/hbltests/UnitTests/HBLCommands/Time.bf -./tests/hbltests/UnitTests/HBLCommands/TipCount.bf -./tests/hbltests/UnitTests/HBLCommands/TipName.bf -./tests/hbltests/UnitTests/HBLCommands/Topology.bf -./tests/hbltests/UnitTests/HBLCommands/Transpose.bf -./tests/hbltests/UnitTests/HBLCommands/Tree.bf -./tests/hbltests/UnitTests/HBLCommands/Type.bf -./tests/hbltests/UnitTests/HBLCommands/While.bf -./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf -./tests/hbltests/UnitTests/HBLCommands/assert.bf -./tests/hbltests/UnitTests/HBLCommands/break.bf -./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf -./tests/hbltests/UnitTests/HBLCommands/include.bf -./tests/hbltests/UnitTests/HBLCommands/lfunction.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf -./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf -./tests/hbltests/UnitTests/HBLCommands/namespace.bf -\n\n------------------------ALL TEST PASSED------------------------------------\n -make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.69+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/hyphy-2.5.69\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/reproducible-path/hyphy-2.5.69\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.69+dfsg -B/build/reproducible-path/hyphy-2.5.69+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2632,487 +2337,487 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf +-- 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf +-- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3 --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf --- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_GTR.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mapping.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mapping.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf --- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf --- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex --- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf --- Installing: 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--- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf -- 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa -- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf --- Installing: 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Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf --- Installing: 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/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69 +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-joint-fitter.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190 --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/BranchAPriori.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf --- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod +-- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set non-toolchain portion of runtime path of "/build/reproducible-path/hyphy-2.5.69+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" @@ -3179,8 +2884,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.69+dfsg-2_amd64.deb'. dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.69+dfsg-2_amd64.deb'. +dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.69+dfsg-2_amd64.deb'. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.69+dfsg-2_amd64.deb'. dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.69+dfsg-2_amd64.deb'. dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.69+dfsg-2_all.deb'. @@ -3191,12 +2896,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3957969/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/136013 and its subdirectories -I: Current time: Tue Nov 4 17:26:06 -12 2025 -I: pbuilder-time-stamp: 1762320366 +I: removing directory /srv/workspace/pbuilder/3957969 and its subdirectories +I: Current time: Wed Dec 9 01:52:54 +14 2026 +I: pbuilder-time-stamp: 1796730774