Diff of the two buildlogs: -- --- b1/build.log 2025-11-01 20:10:09.701056949 +0000 +++ b2/build.log 2025-11-01 20:16:56.841418797 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 1 08:07:21 -12 2025 -I: pbuilder-time-stamp: 1762027641 +I: Current time: Sat Dec 5 16:33:11 +14 2026 +I: pbuilder-time-stamp: 1796437991 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -22,53 +22,85 @@ dpkg-source: info: unpacking libpwizlite_3.0.11-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1331650/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 5 02:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='738e0485cfc8471480f65ae073d408c8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1331650' - PS1='# ' - PS2='> ' + INVOCATION_ID=403cfbf9e92c4244905240676f19c4d7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3470670 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TQhKLkNm/pbuilderrc_uUeP --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TQhKLkNm/b1 --logfile b1/build.log libpwizlite_3.0.11-1.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TQhKLkNm/pbuilderrc_oSdX --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TQhKLkNm/b2 --logfile b2/build.log libpwizlite_3.0.11-1.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1331650/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -231,7 +263,7 @@ Get: 105 http://deb.debian.org/debian forky/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 106 http://deb.debian.org/debian forky/main amd64 python3-docutils all 0.22.2+dfsg-2 [432 kB] Get: 107 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 82.7 MB in 11s (7532 kB/s) +Fetched 82.7 MB in 24s (3400 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -594,8 +626,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Nov 1 20:09:11 UTC 2025. -Universal Time is now: Sat Nov 1 20:09:11 UTC 2025. +Local time is now: Sat Dec 5 02:36:14 UTC 2026. +Universal Time is now: Sat Dec 5 02:36:14 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -694,7 +726,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libpwizlite-3.0.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libpwizlite_3.0.11-1_source.changes +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libpwizlite-3.0.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libpwizlite_3.0.11-1_source.changes dpkg-buildpackage: info: source package libpwizlite dpkg-buildpackage: info: source version 3.0.11-1 dpkg-buildpackage: info: source distribution unstable @@ -721,7 +757,7 @@ dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DCMAKE_BUILD_TYPE=release - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=release .. -- The CXX compiler identification is GNU 15.2.0 -- The C compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info @@ -778,11 +814,12 @@ STATUS: Now managing the CPack process Including file : /build/reproducible-path/libpwizlite-3.0.11/CMakeStuff/targz-source-package-creation.cmake After file inclusion CPACK_SOURCE_IGNORE_FILES: \\.cache/;.*\\.tar\\.gz;moc_.*cxx;\\.#.*;.*\\.aux;.*\\.bbl;.*\\.blg;.*\\.log;.*\\.out;.*\\.toc;/devel_archives/;/doc\\/html/;/doc\\/latex/;Makefile;install_manifest.txt;CMakeCache.txt;CPackConfig.cmake;CPackSourceConfig.cmake;/CMakeFiles/;/_CPack_Packages/;/Debug/;/Release/;/tests/;/\\.externalToolBuilders/;/\\.git/;/\\.kdev4/;development.kdev4;/\\.settings/;Makefile;\\.cdtbuild;\\.cdtproject;\\.project;\\.cproject;/win32/;/win64/;/build/;/buildwin64/;/cbuild/;/wbuild/;/bin/;/buildmingw/;test\\.ods;buildwin32.cmd;libpwizlite.so;OpenDocument-v1.0-os.pdf;debian/;compile_commands.json --- Configuring done (0.8s) --- Generating done (0.0s) +-- Configuring done (2.6s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED @@ -791,483 +828,483 @@ -- Build files have been written to: /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu rst2man debian/libpwizlite.3.rst > debian/libpwizlite.3 sh debian/make-included-headers-hierarchy.sh -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -baseName: masscomparefunctors.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -baseName: bin1d.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' -baseName: breakspec.hpp -dirName: pwiz/utility/findmf/base/resample -'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' -baseName: determinebinwidth.hpp -dirName: pwiz/utility/findmf/base/resample/utilities -'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -baseName: copyif.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' -baseName: diff.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' -baseName: interpolate.hpp -dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' -baseName: interpolation.hpp -dirName: pwiz/utility/findmf/base/base/utilities -'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base/utilities 'pwiz/utility/findmf/base/base/utilities/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/base.hpp' +baseName: interpolation.hpp +dirName: pwiz/utility/findmf/base/base/utilities +'pwiz/utility/findmf/base/base/utilities/interpolation.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/utilities/interpolation.hpp' baseName: constants.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/constants.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/constants.hpp' -baseName: scale.hpp +baseName: interpolate.hpp dirName: pwiz/utility/findmf/base/base -'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' +'pwiz/utility/findmf/base/base/interpolate.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/interpolate.hpp' baseName: base.hpp dirName: pwiz/utility/findmf/base/base 'pwiz/utility/findmf/base/base/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/base.hpp' +baseName: scale.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/scale.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/scale.hpp' +baseName: copyif.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/copyif.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/copyif.hpp' +baseName: diff.hpp +dirName: pwiz/utility/findmf/base/base +'pwiz/utility/findmf/base/base/diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/base/diff.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample/utilities +'pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/utilities/determinebinwidth.hpp' +baseName: masscomparefunctors.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/masscomparefunctors.hpp' +baseName: breakspec.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/breakspec.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/breakspec.hpp' +baseName: determinebinwidth.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/determinebinwidth.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/determinebinwidth.hpp' +baseName: bin1d.hpp +dirName: pwiz/utility/findmf/base/resample +'pwiz/utility/findmf/base/resample/bin1d.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/resample/bin1d.hpp' baseName: preparedata.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/preparedata.hpp' baseName: gauss.hpp dirName: pwiz/utility/findmf/base/filter/utilities 'pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/utilities/gauss.hpp' -baseName: filter.hpp -dirName: pwiz/utility/findmf/base/filter -'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: gaussfilter.hpp dirName: pwiz/utility/findmf/base/filter 'pwiz/utility/findmf/base/filter/gaussfilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/gaussfilter.hpp' -baseName: XMLWriter.hpp -dirName: pwiz/utility/minimxml -'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' +baseName: filter.hpp +dirName: pwiz/utility/findmf/base/filter +'pwiz/utility/findmf/base/filter/filter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/findmf/base/filter/filter.hpp' baseName: SAXParser.hpp dirName: pwiz/utility/minimxml 'pwiz/utility/minimxml/SAXParser.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/minimxml/SAXParser.hpp' -baseName: Stats.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' -baseName: LinearLeastSquares.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' -baseName: Types.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' -baseName: LinearSolver.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' -baseName: MatchedFilter.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' -baseName: Parabola.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +baseName: XMLWriter.hpp +dirName: pwiz/utility/minimxml +'pwiz/utility/minimxml/XMLWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/minimxml/XMLWriter.hpp' baseName: round.hpp dirName: pwiz/utility/math 'pwiz/utility/math/round.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/round.hpp' +baseName: OrderedPair.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: MatrixInverse.hpp dirName: pwiz/utility/math 'pwiz/utility/math/MatrixInverse.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/MatrixInverse.hpp' baseName: HouseholderQR.hpp dirName: pwiz/utility/math 'pwiz/utility/math/HouseholderQR.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/HouseholderQR.hpp' -baseName: OrderedPair.hpp -dirName: pwiz/utility/math -'pwiz/utility/math/OrderedPair.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/OrderedPair.hpp' baseName: erf.hpp dirName: pwiz/utility/math 'pwiz/utility/math/erf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/erf.hpp' baseName: qr.hpp dirName: pwiz/utility/math 'pwiz/utility/math/qr.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/qr.hpp' -baseName: IsotopeCalculator.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' -baseName: MzMobilityWindow.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' -baseName: Chemistry.hpp -dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' +baseName: LinearSolver.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/LinearSolver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/LinearSolver.hpp' +baseName: Parabola.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Parabola.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/Parabola.hpp' +baseName: MatchedFilter.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/MatchedFilter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/MatchedFilter.hpp' +baseName: Stats.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Stats.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/Stats.hpp' +baseName: LinearLeastSquares.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/LinearLeastSquares.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/LinearLeastSquares.hpp' +baseName: Types.hpp +dirName: pwiz/utility/math +'pwiz/utility/math/Types.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/math/Types.hpp' baseName: Ion.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/Ion.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/Ion.hpp' baseName: IsotopeEnvelopeEstimator.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.hpp' -baseName: IsotopeTable.hpp +baseName: MZTolerance.hpp dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' +baseName: MzMobilityWindow.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/MzMobilityWindow.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/MzMobilityWindow.hpp' +baseName: IsotopeCalculator.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/IsotopeCalculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeCalculator.hpp' baseName: ChemistryData.hpp dirName: pwiz/utility/chemistry 'pwiz/utility/chemistry/ChemistryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/ChemistryData.hpp' -baseName: MZTolerance.hpp +baseName: IsotopeTable.hpp dirName: pwiz/utility/chemistry -'pwiz/utility/chemistry/MZTolerance.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/MZTolerance.hpp' -baseName: mru_list.hpp +'pwiz/utility/chemistry/IsotopeTable.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/IsotopeTable.hpp' +baseName: Chemistry.hpp +dirName: pwiz/utility/chemistry +'pwiz/utility/chemistry/Chemistry.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/chemistry/Chemistry.hpp' +baseName: TabReader.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' -baseName: IterationListener.hpp +'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' +baseName: endian.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' +'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' baseName: Environment.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Environment.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Environment.hpp' -baseName: Container.hpp +baseName: BinaryData.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' -baseName: Stream.hpp +'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' +baseName: IntegerSet.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' -baseName: SHA1.h +'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' +baseName: CharIndexedVector.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' +'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' +baseName: SHA1Calculator.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' baseName: almost_equal.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/almost_equal.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/almost_equal.hpp' -baseName: CharIndexedVector.hpp +baseName: automation_vector.h dirName: pwiz/utility/misc -'pwiz/utility/misc/CharIndexedVector.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/CharIndexedVector.hpp' -baseName: shared_map.hpp +'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' +baseName: Container.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' +'pwiz/utility/misc/Container.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Container.hpp' +baseName: optimized_lexical_cast.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' baseName: Exception.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/Exception.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Exception.hpp' +baseName: shared_map.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/shared_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/shared_map.hpp' baseName: VendorReaderTestHarness.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/VendorReaderTestHarness.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/VendorReaderTestHarness.hpp' -baseName: Filesystem.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' -baseName: IntegerSet.hpp +baseName: mru_list.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/IntegerSet.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/IntegerSet.hpp' -baseName: endian.hpp +'pwiz/utility/misc/mru_list.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/mru_list.hpp' +baseName: Export.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/endian.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/endian.hpp' +'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' baseName: SHA1_ostream.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/SHA1_ostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/SHA1_ostream.hpp' -baseName: Base64.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' -baseName: COMInitializer.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' -baseName: Singleton.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' -baseName: Once.hpp -dirName: pwiz/utility/misc -'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' baseName: MSIHandler.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/MSIHandler.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/MSIHandler.hpp' -baseName: Export.hpp +baseName: virtual_map.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Export.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Export.hpp' -baseName: SHA1Calculator.hpp +'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' +baseName: IterationListener.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/SHA1Calculator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/SHA1Calculator.hpp' -baseName: ClickwrapPrompter.hpp +'pwiz/utility/misc/IterationListener.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/IterationListener.hpp' +baseName: random_access_compressed_ifstream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' -baseName: BinaryData.hpp +'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' +baseName: Image.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/BinaryData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/BinaryData.hpp' -baseName: TabReader.hpp +'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' +baseName: unit.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/TabReader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/TabReader.hpp' -baseName: Timer.hpp +'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' +baseName: Stream.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' -baseName: virtual_map.hpp +'pwiz/utility/misc/Stream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Stream.hpp' +baseName: Filesystem.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/virtual_map.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/virtual_map.hpp' -baseName: String.hpp +'pwiz/utility/misc/Filesystem.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Filesystem.hpp' +baseName: COMInitializer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +'pwiz/utility/misc/COMInitializer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/COMInitializer.hpp' +baseName: Std.hpp +dirName: pwiz/utility/misc +'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' +baseName: SHA1.h +dirName: pwiz/utility/misc +'pwiz/utility/misc/SHA1.h' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/SHA1.h' baseName: cpp_cli_utilities.hpp dirName: pwiz/utility/misc 'pwiz/utility/misc/cpp_cli_utilities.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/cpp_cli_utilities.hpp' -baseName: Std.hpp +baseName: Timer.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Std.hpp' -baseName: DateTime.hpp +'pwiz/utility/misc/Timer.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Timer.hpp' +baseName: String.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' -baseName: random_access_compressed_ifstream.hpp +'pwiz/utility/misc/String.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/String.hpp' +baseName: Base64.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/random_access_compressed_ifstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/random_access_compressed_ifstream.hpp' -baseName: unit.hpp +'pwiz/utility/misc/Base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Base64.hpp' +baseName: Once.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/unit.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/unit.hpp' -baseName: Image.hpp +'pwiz/utility/misc/Once.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Once.hpp' +baseName: ClickwrapPrompter.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/Image.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Image.hpp' -baseName: automation_vector.h +'pwiz/utility/misc/ClickwrapPrompter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/ClickwrapPrompter.hpp' +baseName: Singleton.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/automation_vector.h' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/automation_vector.h' -baseName: optimized_lexical_cast.hpp +'pwiz/utility/misc/Singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/Singleton.hpp' +baseName: DateTime.hpp dirName: pwiz/utility/misc -'pwiz/utility/misc/optimized_lexical_cast.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp' -baseName: Version.hpp -dirName: pwiz -'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/Version.hpp' -baseName: DemuxDataProcessingStrings.hpp -dirName: pwiz/analysis/demux -'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' +'pwiz/utility/misc/DateTime.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/utility/misc/DateTime.hpp' baseName: SpectrumList_Demux.hpp dirName: pwiz/analysis/spectrum_processing 'pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp' -baseName: SpectrumList_MGF.hpp +baseName: DemuxDataProcessingStrings.hpp +dirName: pwiz/analysis/demux +'pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/analysis/demux/DemuxDataProcessingStrings.hpp' +baseName: Version.hpp +dirName: pwiz +'pwiz/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/Version.hpp' +baseName: Index.hpp +dirName: pwiz/data/common +'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/Index.hpp' +baseName: obo.hpp +dirName: pwiz/data/common +'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/obo.hpp' +baseName: CVTranslator.hpp +dirName: pwiz/data/common +'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' +baseName: MemoryIndex.hpp +dirName: pwiz/data/common +'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' +baseName: cv.hpp +dirName: pwiz/data/common +'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/cv.hpp' +baseName: BinaryIndexStream.hpp +dirName: pwiz/data/common +'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' +baseName: Unimod.hpp +dirName: pwiz/data/common +'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' +baseName: diff_std.hpp +dirName: pwiz/data/common +'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' +baseName: ParamTypes.hpp +dirName: pwiz/data/common +'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' +baseName: SHA1OutputObserver.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' -baseName: MSDataFile.hpp +'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' +baseName: IO.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' -baseName: SpectrumList_MSn.hpp +'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' +baseName: Connection_mzMLb.hpp +dirName: pwiz/data/msdata/mzmlb +'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' +baseName: SpectrumListCache.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' -baseName: SpectrumList_mzML.hpp +'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' +baseName: DefaultReaderList.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' -baseName: ChromatogramListBase.hpp +'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' +baseName: examples.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' +baseName: References.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' baseName: BinaryDataEncoder.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/BinaryDataEncoder.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/BinaryDataEncoder.hpp' -baseName: SpectrumListBase.hpp +baseName: RAMPAdapter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' -baseName: Serializer_mzXML.hpp +'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' +baseName: Reader.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' -baseName: SpectrumList_mzXML.hpp +'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' +baseName: Serializer_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' -baseName: Serializer_MGF.hpp +'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' +baseName: SpectrumIterator.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' +'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' baseName: MemoryMRUCache.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/MemoryMRUCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MemoryMRUCache.hpp' -baseName: Diff.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' -baseName: SpectrumInfo.hpp -dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' -baseName: Index_mzML.hpp +baseName: Serializer_MGF.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' -baseName: TextWriter.hpp +'pwiz/data/msdata/Serializer_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MGF.hpp' +baseName: SpectrumList_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' -baseName: MSDataMerger.hpp +'pwiz/data/msdata/SpectrumList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzML.hpp' +baseName: SpectrumList_MSn.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' -baseName: SpectrumList_mz5.hpp +'pwiz/data/msdata/SpectrumList_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MSn.hpp' +baseName: Serializer_mzXML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' -baseName: Serializer_MSn.hpp +'pwiz/data/msdata/Serializer_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzXML.hpp' +baseName: ChromatogramListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' -baseName: IO.hpp +'pwiz/data/msdata/ChromatogramListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramListBase.hpp' +baseName: MSDataFile.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/IO.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/IO.hpp' -baseName: DefaultReaderList.hpp +'pwiz/data/msdata/MSDataFile.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSDataFile.hpp' +baseName: MSData.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/DefaultReaderList.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp' -baseName: SHA1OutputObserver.hpp +'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' +baseName: SpectrumList_mzXML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SHA1OutputObserver.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SHA1OutputObserver.hpp' -baseName: ChromatogramList_mzML.hpp +'pwiz/data/msdata/SpectrumList_mzXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mzXML.hpp' +baseName: SpectrumInfo.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' -baseName: SpectrumIterator.hpp +'pwiz/data/msdata/SpectrumInfo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp' +baseName: MSDataMerger.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumIterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumIterator.hpp' -baseName: examples.hpp +'pwiz/data/msdata/MSDataMerger.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSDataMerger.hpp' +baseName: SpectrumList_BTDX.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/examples.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/examples.hpp' -baseName: MSNumpress.hpp +'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' +baseName: Diff.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' -baseName: Connection_mzMLb.hpp -dirName: pwiz/data/msdata/mzmlb -'pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/mzmlb/Connection_mzMLb.hpp' -baseName: RAMPAdapter.hpp +'pwiz/data/msdata/Diff.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Diff.hpp' +baseName: SpectrumList_MGF.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/RAMPAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/RAMPAdapter.hpp' -baseName: Version.hpp +'pwiz/data/msdata/SpectrumList_MGF.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_MGF.hpp' +baseName: SpectrumWorkerThreads.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' -baseName: References.hpp +'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' +baseName: SpectrumListWrapper.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/References.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/References.hpp' -baseName: LegacyAdapter.hpp +'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' +baseName: Serializer_MSn.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' -baseName: SpectrumList_BTDX.hpp +'pwiz/data/msdata/Serializer_MSn.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_MSn.hpp' +baseName: SpectrumList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumList_BTDX.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_BTDX.hpp' -baseName: SpectrumListWrapper.hpp +'pwiz/data/msdata/SpectrumList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumList_mz5.hpp' +baseName: ChromatogramList_mz5.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListWrapper.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListWrapper.hpp' +'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' baseName: Serializer_mzML.hpp dirName: pwiz/data/msdata 'pwiz/data/msdata/Serializer_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mzML.hpp' -baseName: ChromatogramList_mz5.hpp +baseName: SpectrumListBase.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/ChromatogramList_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mz5.hpp' -baseName: Serializer_mz5.hpp +'pwiz/data/msdata/SpectrumListBase.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListBase.hpp' +baseName: Version.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Serializer_mz5.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Serializer_mz5.hpp' -baseName: MSData.hpp +'pwiz/data/msdata/Version.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Version.hpp' +baseName: LegacyAdapter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/MSData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSData.hpp' -baseName: Reader.hpp +'pwiz/data/msdata/LegacyAdapter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/LegacyAdapter.hpp' +baseName: Index_mzML.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/Reader.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Reader.hpp' -baseName: SpectrumListCache.hpp +'pwiz/data/msdata/Index_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/Index_mzML.hpp' +baseName: MSNumpress.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumListCache.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumListCache.hpp' -baseName: SpectrumWorkerThreads.hpp +'pwiz/data/msdata/MSNumpress.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/MSNumpress.hpp' +baseName: TextWriter.hpp dirName: pwiz/data/msdata -'pwiz/data/msdata/SpectrumWorkerThreads.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/SpectrumWorkerThreads.hpp' -baseName: Unimod.hpp -dirName: pwiz/data/common -'pwiz/data/common/Unimod.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/Unimod.hpp' -baseName: obo.hpp -dirName: pwiz/data/common -'pwiz/data/common/obo.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/obo.hpp' -baseName: MemoryIndex.hpp -dirName: pwiz/data/common -'pwiz/data/common/MemoryIndex.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/MemoryIndex.hpp' -baseName: CVTranslator.hpp -dirName: pwiz/data/common -'pwiz/data/common/CVTranslator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/CVTranslator.hpp' -baseName: ParamTypes.hpp -dirName: pwiz/data/common -'pwiz/data/common/ParamTypes.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/ParamTypes.hpp' -baseName: cv.hpp -dirName: pwiz/data/common -'pwiz/data/common/cv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/cv.hpp' -baseName: BinaryIndexStream.hpp -dirName: pwiz/data/common -'pwiz/data/common/BinaryIndexStream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/BinaryIndexStream.hpp' -baseName: Index.hpp -dirName: pwiz/data/common -'pwiz/data/common/Index.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/Index.hpp' -baseName: diff_std.hpp -dirName: pwiz/data/common -'pwiz/data/common/diff_std.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/common/diff_std.hpp' +'pwiz/data/msdata/TextWriter.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/TextWriter.hpp' +baseName: ChromatogramList_mzML.hpp +dirName: pwiz/data/msdata +'pwiz/data/msdata/ChromatogramList_mzML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/msdata/ChromatogramList_mzML.hpp' +baseName: CalibrationParameters.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: MinimumPepXML.hpp dirName: pwiz/data/misc 'pwiz/data/misc/MinimumPepXML.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/MinimumPepXML.hpp' +baseName: FrequencyData.hpp +dirName: pwiz/data/misc +'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' baseName: PeakData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/PeakData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/PeakData.hpp' baseName: FrequencyDataTestData.hpp dirName: pwiz/data/misc 'pwiz/data/misc/FrequencyDataTestData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/FrequencyDataTestData.hpp' -baseName: CalibrationParameters.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/CalibrationParameters.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/CalibrationParameters.hpp' baseName: SampleDatum.hpp dirName: pwiz/data/misc 'pwiz/data/misc/SampleDatum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/SampleDatum.hpp' -baseName: FrequencyData.hpp -dirName: pwiz/data/misc -'pwiz/data/misc/FrequencyData.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/pwiz/data/misc/FrequencyData.hpp' -baseName: singleton.hpp -dirName: boost/utility -'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/singleton.hpp' baseName: mutexed_singleton.hpp dirName: boost/utility 'boost/utility/mutexed_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/mutexed_singleton.hpp' baseName: thread_specific_singleton.hpp dirName: boost/utility 'boost/utility/thread_specific_singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/thread_specific_singleton.hpp' -baseName: restricted.hpp -dirName: boost/utility/detail -'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' baseName: member_dereference.hpp dirName: boost/utility/detail 'boost/utility/detail/member_dereference.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/detail/member_dereference.hpp' baseName: singleton_manager.hpp dirName: boost/utility/detail 'boost/utility/detail/singleton_manager.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/detail/singleton_manager.hpp' -baseName: foreach_field.hpp -dirName: boost -'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/foreach_field.hpp' -baseName: arbitrary_positional_facade.hpp -dirName: boost/iostreams -'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' -baseName: base64.hpp -dirName: boost/iostreams/filter -'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' -baseName: enum.hpp -dirName: boost -'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum.hpp' -baseName: iterator.hpp -dirName: boost/enum -'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/iterator.hpp' -baseName: bitfield.hpp -dirName: boost/enum -'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/bitfield.hpp' -baseName: macros.hpp -dirName: boost/enum -'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/macros.hpp' -baseName: base.hpp -dirName: boost/enum -'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/base.hpp' +baseName: restricted.hpp +dirName: boost/utility/detail +'boost/utility/detail/restricted.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/detail/restricted.hpp' +baseName: singleton.hpp +dirName: boost/utility +'boost/utility/singleton.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/utility/singleton.hpp' +baseName: args.hpp +dirName: boost/nowide +'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/args.hpp' baseName: filebuf.hpp dirName: boost/nowide 'boost/nowide/filebuf.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/filebuf.hpp' -baseName: iostream.hpp -dirName: boost/nowide -'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/iostream.hpp' -baseName: system.hpp -dirName: boost/nowide -'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/system.hpp' baseName: convert.hpp dirName: boost/nowide 'boost/nowide/convert.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/convert.hpp' -baseName: fstream.hpp +baseName: cstdio.hpp dirName: boost/nowide -'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/fstream.hpp' -baseName: cenv.hpp +'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/cstdio.hpp' +baseName: cstdlib.hpp dirName: boost/nowide -'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/cenv.hpp' +'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' baseName: config.hpp dirName: boost/nowide 'boost/nowide/config.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/config.hpp' +baseName: stackstring.hpp +dirName: boost/nowide +'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/stackstring.hpp' baseName: windows.hpp dirName: boost/nowide 'boost/nowide/windows.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/windows.hpp' -baseName: cstdlib.hpp +baseName: fstream.hpp dirName: boost/nowide -'boost/nowide/cstdlib.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/cstdlib.hpp' -baseName: args.hpp +'boost/nowide/fstream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/fstream.hpp' +baseName: system.hpp dirName: boost/nowide -'boost/nowide/args.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/args.hpp' -baseName: stackstring.hpp +'boost/nowide/system.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/system.hpp' +baseName: iostream.hpp dirName: boost/nowide -'boost/nowide/stackstring.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/stackstring.hpp' -baseName: cstdio.hpp +'boost/nowide/iostream.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/iostream.hpp' +baseName: cenv.hpp dirName: boost/nowide -'boost/nowide/cstdio.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/cstdio.hpp' +'boost/nowide/cenv.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/nowide/cenv.hpp' +baseName: macros.hpp +dirName: boost/enum +'boost/enum/macros.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/macros.hpp' +baseName: iterator.hpp +dirName: boost/enum +'boost/enum/iterator.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/iterator.hpp' +baseName: bitfield.hpp +dirName: boost/enum +'boost/enum/bitfield.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/bitfield.hpp' +baseName: base.hpp +dirName: boost/enum +'boost/enum/base.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum/base.hpp' +baseName: foreach_field.hpp +dirName: boost +'boost/foreach_field.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/foreach_field.hpp' +baseName: base64.hpp +dirName: boost/iostreams/filter +'boost/iostreams/filter/base64.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/iostreams/filter/base64.hpp' +baseName: arbitrary_positional_facade.hpp +dirName: boost/iostreams +'boost/iostreams/arbitrary_positional_facade.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/iostreams/arbitrary_positional_facade.hpp' +baseName: enum.hpp +dirName: boost +'boost/enum.hpp' -> '/build/reproducible-path/libpwizlite-3.0.11/debian/includes/pwizlite/boost/enum.hpp' make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.11' dh_auto_build -O--build-system=cmake - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.11 -B/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1280,101 +1317,118 @@ make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libpwizlite-3.0.11 /build/reproducible-path/libpwizlite-3.0.11/src /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src/CMakeFiles/pwizlite-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build +make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/pwizlite-static.dir/build.make src/CMakeFiles/pwizlite-static.dir/build +make -f src/CMakeFiles/pwizlite-shared.dir/build.make src/CMakeFiles/pwizlite-shared.dir/build make[3]: Entering directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -[ 2%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/cv.cpp.o -[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/LegacyAdapter.cpp.o -[ 5%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -[ 6%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/diff_std.cpp.o -[ 7%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/MSNumpress.cpp.o -[ 8%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/References.cpp.o -[ 10%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o -[ 11%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/ParamTypes.cpp -[ 12%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -[ 13%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/common/CVTranslator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp +[ 1%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/common/ParamTypes.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/ParamTypes.cpp +[ 2%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o +[ 3%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/ChromatogramList_mzML.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/common/CVTranslator.cpp.o.d -o 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/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.cpp +[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/SHA1Calculator.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp: In function 'void pwiz::msdata::MSNumpress::encodeInt(int, unsigned char*, size_t*)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp:114:21: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 114 | } else if (init == mask) { | ~~~~~^~~~~~~ +[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.cpp In file included from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp:27: @@ -1396,6 +1450,36 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:24: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ In file included from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp:27: @@ -1417,31 +1501,37 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSNumpress.cpp:347:15: note: 'y' was declared here 347 | long long y; | ^ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/References.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.cpp -[ 53%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumInfo.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: @@ -1453,8 +1543,10 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:26: +[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1463,60 +1555,126 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.cpp:27: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.cpp:25: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] - 40 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:24: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] - 88 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] - 124 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:25: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.hpp:31: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:30: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} @@ -1525,7 +1683,28 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:28: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:24: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -1560,19 +1739,43 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] - 40 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] - 88 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] - 124 | const BaseDiffConfig& config) - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1581,13 +1784,8 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.hpp:28: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.cpp:27: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1596,14 +1794,20 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1612,6 +1816,17 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:28: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -1637,9 +1852,19 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] 593 | virtual Status endElement(const std::string& name, | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] 594 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] 596 | virtual Status characters(const SAXParser::saxstring& text, @@ -1647,34 +1872,21 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:30: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:32: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -1709,39 +1921,29 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.cpp:27: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.cpp:27: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:39: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:87:119: warning: unused parameter 'config' [-Wunused-parameter] + 87 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1750,20 +1952,28 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:39: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, + from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/ParamTypes.hpp:33, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/bind.hpp: At global scope: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -1798,6 +2008,106 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:28: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.hpp:31: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 86 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] + 87 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:28: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] + 95 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] + 120 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] + 165 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] + 201 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 86 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] + 87 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] + 95 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] + 120 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] + 165 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] + 201 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] + 40 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] + 88 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] + 124 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:32: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] 586 | const std::string& data, | ~~~~~~~~~~~~~~~~~~~^~~~ @@ -1828,26 +2138,25 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 55%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:27: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:25: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.cpp:25: +In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, + from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, + from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/ParamTypes.hpp:33, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:30: +/usr/include/boost/bind.hpp: At global scope: +/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' + 36 | BOOST_PRAGMA_MESSAGE( + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1856,11 +2165,23 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/ChromatogramList_mzML.cpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const std::string&, const std::string&, std::string&, std::string&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:40:33: warning: unused parameter 'config' [-Wunused-parameter] + 40 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(const boost::logic::tribool&, const boost::logic::tribool&, boost::logic::tribool&, boost::logic::tribool&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:88:33: warning: unused parameter 'config' [-Wunused-parameter] + 88 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp: In function 'void pwiz::data::diff_impl::diff(pwiz::cv::CVID, pwiz::cv::CVID, pwiz::cv::CVID&, pwiz::cv::CVID&, const pwiz::data::BaseDiffConfig&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/diff_std.cpp:124:33: warning: unused parameter 'config' [-Wunused-parameter] + 124 | const BaseDiffConfig& config) + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1134:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] + 1134 | if ((result >= 0 && result < size()) || s == 0) + | ~~~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -1895,47 +2216,14 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] - 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) - | ~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1948,7 +2236,14 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 278 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] + 279 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -1983,8 +2278,10 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +[ 57%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -1994,115 +2291,93 @@ 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:87:119: warning: unused parameter 'config' [-Wunused-parameter] - 87 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:28: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.hpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 86 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] - 87 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] - 95 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] - 120 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] - 165 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] - 201 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] - 85 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] - 136 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] - 195 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 278 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] - 279 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] - 267 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 504 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] - 505 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 697 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] - 698 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] - 970 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.hpp:30, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/LegacyAdapter.cpp:27: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] - 1083 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 1359 | const Attributes& attributes, +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:28: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] + 585 | virtual Status processingInstruction(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] + 586 | const std::string& data, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] + 587 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] + 589 | virtual Status startElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 590 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] - 1360 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] + 591 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:28: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] + 593 | virtual Status endElement(const std::string& name, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] + 594 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] + 596 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] + 597 | stream_offset position) {return Status::Ok;} + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldIgnore(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:145:53: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:147:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:148:40: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2137,6 +2412,38 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp: In function 'bool pwiz::data::shouldReplace(const std::string&, pwiz::cv::CVID, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:34: warning: unused parameter 'key' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:44: warning: unused parameter 'value' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/CVTranslator.cpp:153:56: warning: unused parameter 'cvid' [-Wunused-parameter] + 153 | bool shouldReplace(const string& key, CVID value, CVID cvid) + | ~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1245:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1245 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2172,17 +2479,17 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1312:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1312 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:456:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] - 456 | const SpectrumListPtr spectrumListPtr, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -2217,6 +2524,95 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1134:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] + 1134 | if ((result >= 0 && result < size()) || s == 0) + | ~~~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] + 85 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] + 136 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:30: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] + 195 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] + 267 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 504 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] + 505 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 697 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] + 698 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] + 970 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] + 1083 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 1359 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] + 1360 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1245:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1245 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1312:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] + 1312 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const + | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2641:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 2641 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") @@ -2229,51 +2625,14 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3087:47: warning: unused parameter 'position' [-Wunused-parameter] 3087 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1037:47: warning: unused parameter 'position' [-Wunused-parameter] - 1037 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3417:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 3417 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3335:47: warning: unused parameter 'position' [-Wunused-parameter] - 3335 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1166:47: warning: unused parameter 'position' [-Wunused-parameter] - 1166 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] + 121 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1247:45: warning: unused parameter 'position' [-Wunused-parameter] - 1247 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] + 162 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1295:47: warning: unused parameter 'position' [-Wunused-parameter] - 1295 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1363:47: warning: unused parameter 'position' [-Wunused-parameter] - 1363 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray]': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2106:49: required from here - 2106 | readMzMLbBinaryDataArray(this->binaryDataArray); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] - 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray]': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2132:49: required from here - 2132 | readMzMLbBinaryDataArray(this->integerDataArray); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] - 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1134:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] - 1134 | if ((result >= 0 && result < size()) || s == 0) - | ~~~~~~~^~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] @@ -2316,45 +2675,106 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] + 356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1245:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1245 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_BTDX.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1312:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1312 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -[ 57%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.cpp -In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, - from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/ParamTypes.hpp:33, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/bind.hpp: At global scope: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3417:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 3417 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3335:47: warning: unused parameter 'position' [-Wunused-parameter] + 3335 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] + 85 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] + 136 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] + 195 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:39: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] + 267 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumInfo.cpp:27: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 504 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] + 505 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] + 121 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 697 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] + 698 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] + 162 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] + 970 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] + 356 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] + 1083 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 1359 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] + 1360 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] + 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } + | ~~~~~~~~~~~~~~~~~~~^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2363,15 +2783,39 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -[ 58%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:456:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] + 456 | const SpectrumListPtr spectrumListPtr, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray]': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2106:49: required from here + 2106 | readMzMLbBinaryDataArray(this->binaryDataArray); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] + 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray]': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2132:49: required from here + 2132 | readMzMLbBinaryDataArray(this->integerDataArray); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] + 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1037:47: warning: unused parameter 'position' [-Wunused-parameter] + 1037 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2641:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 2641 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const @@ -2380,9 +2824,25 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] 133 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2957:47: warning: unused parameter 'position' [-Wunused-parameter] + 2957 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] 136 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1166:47: warning: unused parameter 'position' [-Wunused-parameter] + 1166 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_msInstrument::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1247:45: warning: unused parameter 'position' [-Wunused-parameter] + 1247 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_dataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1295:47: warning: unused parameter 'position' [-Wunused-parameter] + 1295 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const @@ -2391,6 +2851,14 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] 216 | const std::string& head, | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::Handler_mzXML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1363:47: warning: unused parameter 'position' [-Wunused-parameter] + 1363 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3087:47: warning: unused parameter 'position' [-Wunused-parameter] + 3087 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] 219 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ @@ -2483,8 +2951,30 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] 536 | const Config& config) const | ~~~~~~~~~~~~~~^~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/References.cpp:25: +[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3417:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 3417 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3335:47: warning: unused parameter 'position' [-Wunused-parameter] + 3335 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray]': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2106:49: required from here + 2106 | readMzMLbBinaryDataArray(this->binaryDataArray); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] + 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray]': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2132:49: required from here + 2132 | readMzMLbBinaryDataArray(this->integerDataArray); + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] + 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2493,20 +2983,124 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.cpp:27380: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] - 103 | for (int o=0;o >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] + 296 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] + 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] + 317 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] + 320 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] + 353 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] + 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] + 380 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] + 383 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] + 410 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] + 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] + 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] + 463 | const string& head, + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] + 464 | MSData& result, + | ~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] + 465 | int runIndex, + | ~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] + 466 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] + 488 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzMLb::identify(const std::string&, const std::string&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:507:64: warning: unused parameter 'filename' [-Wunused-parameter] + 507 | PWIZ_API_DECL std::string Reader_mzMLb::identify(const string& filename, const string& head) const + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:532:58: warning: unused parameter 'filename' [-Wunused-parameter] + 532 | PWIZ_API_DECL void Reader_mzMLb::read(const std::string& filename, + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] + 533 | const std::string& head, + | ~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:534:13: warning: unused parameter 'result' [-Wunused-parameter] + 534 | MSData& result, + | ~~~~~~~~^~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:535:9: warning: unused parameter 'runIndex' [-Wunused-parameter] + 535 | int runIndex, + | ~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] + 536 | const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) @@ -2514,20 +3108,81 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:587:9: note: here 587 | case MS_Bruker_Agilent_YEP_nativeID_format: | ^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] + 84 | } catch (index_not_found e){ + | ^ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:131:47: warning: unused parameter 'position' [-Wunused-parameter] + 131 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:215:45: warning: unused parameter 'position' [-Wunused-parameter] + 215 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:243:47: warning: unused parameter 'position' [-Wunused-parameter] + 243 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:286:45: warning: unused parameter 'position' [-Wunused-parameter] + 286 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:306:70: warning: unused parameter 'position' [-Wunused-parameter] + 306 | virtual Status endElement(const std::string& name, stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:704:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 704 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:705:47: warning: unused parameter 'position' [-Wunused-parameter] + 705 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:713:45: warning: unused parameter 'position' [-Wunused-parameter] + 713 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:739:47: warning: unused parameter 'position' [-Wunused-parameter] + 739 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:757:45: warning: unused parameter 'position' [-Wunused-parameter] + 757 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:781:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 781 | const Attributes& attributes, + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:782:47: warning: unused parameter 'position' [-Wunused-parameter] + 782 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:799:59: warning: unused parameter 'text' [-Wunused-parameter] + 799 | virtual Status characters(const SAXParser::saxstring& text, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:800:45: warning: unused parameter 'position' [-Wunused-parameter] + 800 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:896:45: warning: unused parameter 'position' [-Wunused-parameter] + 896 | stream_offset position) + | ~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] + 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) + | ^~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:587:9: note: here + 587 | case MS_Bruker_Agilent_YEP_nativeID_format: + | ^~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.cpp:27380: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 103 | for (int o=0;o >&, const Config&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:87:119: warning: unused parameter 'config' [-Wunused-parameter] + 87 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const + | ~~~~~~~~~~~~~~^~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.hpp:29: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] + 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} + | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] 84 | } catch (index_not_found e){ @@ -2597,10 +3261,216 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:896:45: warning: unused parameter 'position' [-Wunused-parameter] 896 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -[ 60%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/String.cpp.o +[ 61%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.cpp:27380: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.inl: In function 'const pwiz::cv::CVTermInfo& pwiz::cv::cvTermInfo(const char*)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/cv.inl:103:23: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] + 103 | for (int o=0;o::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here @@ -2770,8 +3640,10 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.hpp:85:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 85 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.hpp:27, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.cpp:25: +[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/XMLWriter.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2780,21 +3652,6 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -[ 62%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp -[ 63%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -[ 65%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Version.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Version.cpp -[ 66%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/BinaryDataEncoder.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp -[ 67%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/DefaultReaderList.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] 337 | mru_list taskMRU_; @@ -2805,63 +3662,13 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) | ^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:28: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Index_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp -[ 68%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/IO.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp -[ 71%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:51:21: warning: WIN32 is NOT defined - 51 | #pragma GCC warning "WIN32 is NOT defined" - | ^~~~~~~~~~~~~~~~~~~~~~ -[ 72%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/MSDataFile.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] + 552 | bool useWorkerThreads, bool continueOnError) const + | ~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp: In member function 'std::streampos pwiz::util::random_access_compressed_streambuf::my_seekg(std::streampos, std::ios_base::seekdir, std::ios_base::openmode)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:824:138: warning: unused parameter 'Mode' [-Wunused-parameter] 824 | std::streampos random_access_compressed_streambuf::my_seekg(std::streampos offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { @@ -2870,97 +3677,12 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -[ 73%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.cpp -[ 75%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Reader.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp -[ 77%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object 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-Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/Serializer_mzXML.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp -[ 80%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumListBase.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.cpp -[ 81%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MGF.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:121:47: warning: unused parameter 'position' [-Wunused-parameter] - 121 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:162:45: warning: unused parameter 'position' [-Wunused-parameter] - 162 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_BTDX.cpp:356:45: warning: unused parameter 'position' [-Wunused-parameter] - 356 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -[ 82%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumList_MSn.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:27: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzML.cpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:25: +[ 86%] Building CXX object src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -Dpwizlite_shared_EXPORTS -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -fPIC -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-shared.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp +[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Base64.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -2969,81 +3691,12 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:26: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:28: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:25: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -[ 83%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/data/msdata/SpectrumWorkerThreads.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp -In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, - from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, - from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/common/ParamTypes.hpp:33, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:30: -/usr/include/boost/bind.hpp: At global scope: -/usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' - 36 | BOOST_PRAGMA_MESSAGE( - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:28: +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3078,299 +3731,16 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 85%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/SAXParser.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.hpp:30: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp: In member function 'bool pwiz::chemistry::MzMobilityWindow::mobilityValueInBounds(double) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual size_t pwiz::msdata::SpectrumList::findAbbreviated(const std::string&, char) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1134:21: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] - 1134 | if ((result >= 0 && result < size()) || s == 0) - | ~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:24: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:28: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] + 278 | const Attributes& attributes, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] + 279 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:25: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSDataFile.cpp:39: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.hpp:30: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::SpectrumPtr pwiz::msdata::SpectrumListSimple::spectrum(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1245:75: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1245 | PWIZ_API_DECL SpectrumPtr SpectrumListSimple::spectrum(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp: In member function 'virtual std::string pwiz::msdata::Reader_MS2::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:53: warning: unused parameter 'filename' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.hpp:98:82: warning: unused parameter 'head' [-Wunused-parameter] - 98 | virtual std::string identify(const std::string& filename, const std::string& head) const { return ""; } - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In member function 'virtual pwiz::msdata::ChromatogramPtr pwiz::msdata::ChromatogramListSimple::chromatogram(size_t, bool) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:1312:87: warning: unused parameter 'getBinaryData' [-Wunused-parameter] - 1312 | PWIZ_API_DECL ChromatogramPtr ChromatogramListSimple::chromatogram(size_t index, bool getBinaryData) const - | ~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.hpp:31: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzML::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:126:68: warning: unused parameter 'filename' [-Wunused-parameter] - 126 | PWIZ_API_DECL std::string Reader_mzML::identify(const std::string& filename, const std::string& head) const - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:133:57: warning: unused parameter 'head' [-Wunused-parameter] - 133 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:136:52: warning: unused parameter 'config' [-Wunused-parameter] - 136 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzXML::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:201:69: warning: unused parameter 'filename' [-Wunused-parameter] - 201 | PWIZ_API_DECL std::string Reader_mzXML::identify(const std::string& filename, const std::string& head) const - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzXML::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:216:58: warning: unused parameter 'head' [-Wunused-parameter] - 216 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:219:53: warning: unused parameter 'config' [-Wunused-parameter] - 219 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MGF::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:267:86: warning: unused parameter 'head' [-Wunused-parameter] - 267 | PWIZ_API_DECL std::string Reader_MGF::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:273:51: warning: unused parameter 'head' [-Wunused-parameter] - 273 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:276:51: warning: unused parameter 'config' [-Wunused-parameter] - 276 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MGF::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:296:51: warning: unused parameter 'config' [-Wunused-parameter] - 296 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_MSn::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:307:86: warning: unused parameter 'head' [-Wunused-parameter] - 307 | PWIZ_API_DECL std::string Reader_MSn::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:317:51: warning: unused parameter 'head' [-Wunused-parameter] - 317 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:320:51: warning: unused parameter 'config' [-Wunused-parameter] - 320 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_MSn::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:353:51: warning: unused parameter 'config' [-Wunused-parameter] - 353 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.cpp:25: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_BTDX::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:364:63: warning: unused parameter 'filename' [-Wunused-parameter] - 364 | PWIZ_API_DECL std::string Reader_BTDX::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:380:52: warning: unused parameter 'head' [-Wunused-parameter] - 380 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:383:52: warning: unused parameter 'config' [-Wunused-parameter] - 383 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_BTDX::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:410:52: warning: unused parameter 'config' [-Wunused-parameter] - 410 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mz5::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:429:62: warning: unused parameter 'filename' [-Wunused-parameter] - 429 | PWIZ_API_DECL std::string Reader_mz5::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:462:51: warning: unused parameter 'filename' [-Wunused-parameter] - 462 | PWIZ_API_DECL void Reader_mz5::read(const string& filename, - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:463:51: warning: unused parameter 'head' [-Wunused-parameter] - 463 | const string& head, - | ~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:464:45: warning: unused parameter 'result' [-Wunused-parameter] - 464 | MSData& result, - | ~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:465:41: warning: unused parameter 'runIndex' [-Wunused-parameter] - 465 | int runIndex, - | ~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:466:51: warning: unused parameter 'config' [-Wunused-parameter] - 466 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mz5::read(const std::string&, const std::string&, std::vector >&, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:488:51: warning: unused parameter 'config' [-Wunused-parameter] - 488 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual std::string pwiz::msdata::Reader_mzMLb::identify(const std::string&, const std::string&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:507:64: warning: unused parameter 'filename' [-Wunused-parameter] - 507 | PWIZ_API_DECL std::string Reader_mzMLb::identify(const string& filename, const string& head) const - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp: In member function 'virtual void pwiz::msdata::Reader_mzMLb::read(const std::string&, const std::string&, pwiz::msdata::MSData&, int, const pwiz::msdata::Reader::Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:532:58: warning: unused parameter 'filename' [-Wunused-parameter] - 532 | PWIZ_API_DECL void Reader_mzMLb::read(const std::string& filename, - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:533:24: warning: unused parameter 'head' [-Wunused-parameter] - 533 | const std::string& head, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:534:13: warning: unused parameter 'result' [-Wunused-parameter] - 534 | MSData& result, - | ~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:535:9: warning: unused parameter 'runIndex' [-Wunused-parameter] - 535 | int runIndex, - | ~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/DefaultReaderList.cpp:536:19: warning: unused parameter 'config' [-Wunused-parameter] - 536 | const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:25: + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] 769 | virtual void warn_once(const char* msg) const {} @@ -3379,82 +3749,41 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] 853 | virtual void warn_once(const char* msg) const {} | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:32: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:32: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.hpp:28: +[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.cpp +[ 90%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/SHA1.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'bool pwiz::util::IntegerSet::Iterator::operator==(const pwiz::util::IntegerSet::Iterator&) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp:325:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 325 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp: In static member function 'static size_t pwiz::msdata::{anonymous}::SpectrumList_MGFImpl::FindEndTag(const std::string&, size_t)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp:353:27: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] + 353 | for (int i = 0; i < sizeof(endTagsCCSInTitle) / sizeof(endTagsCCSInTitle[0]); i++) + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:51:21: warning: WIN32 is NOT defined + 51 | #pragma GCC warning "WIN32 is NOT defined" + | ^~~~~~~~~~~~~~~~~~~~~~ +[ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/SHA1Calculator.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.cpp:27: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:26: +[ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:456:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] + 456 | const SpectrumListPtr spectrumListPtr, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.cpp +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:28: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] 585 | virtual Status processingInstruction(const std::string& name, @@ -3489,217 +3818,6 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] 597 | stream_offset position) {return Status::Ok;} | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp: In member function 'virtual void pwiz::msdata::Reader::readIds(const std::string&, const std::string&, std::vector >&, const Config&) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Reader.cpp:87:119: warning: unused parameter 'config' [-Wunused-parameter] - 87 | PWIZ_API_DECL void Reader::readIds(const string& filename, const string& head, vector& results, const Config& config) const - | ~~~~~~~~~~~~~~^~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In constructor 'pwiz::msdata::{anonymous}::SpectrumList_mzXMLImpl::SpectrumList_mzXMLImpl(boost::shared_ptr >, const pwiz::msdata::MSData&, bool)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:84:30: warning: catching polymorphic type 'struct pwiz::msdata::SpectrumList_mzXML::index_not_found' by value [-Wcatch-value=] - 84 | } catch (index_not_found e){ - | ^ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:131:47: warning: unused parameter 'position' [-Wunused-parameter] - 131 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPrecursor::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:215:45: warning: unused parameter 'position' [-Wunused-parameter] - 215 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:243:47: warning: unused parameter 'position' [-Wunused-parameter] - 243 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:286:45: warning: unused parameter 'position' [-Wunused-parameter] - 286 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerPeaks::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:306:70: warning: unused parameter 'position' [-Wunused-parameter] - 306 | virtual Status endElement(const std::string& name, stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:704:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 704 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:705:47: warning: unused parameter 'position' [-Wunused-parameter] - 705 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:713:45: warning: unused parameter 'position' [-Wunused-parameter] - 713 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:739:47: warning: unused parameter 'position' [-Wunused-parameter] - 739 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:757:45: warning: unused parameter 'position' [-Wunused-parameter] - 757 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:781:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 781 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:782:47: warning: unused parameter 'position' [-Wunused-parameter] - 782 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndex::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:799:59: warning: unused parameter 'text' [-Wunused-parameter] - 799 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:800:45: warning: unused parameter 'position' [-Wunused-parameter] - 800 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexCreator::endElement(const std::string&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_mzXML.cpp:896:45: warning: unused parameter 'position' [-Wunused-parameter] - 896 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] - 305 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here - 131 | size_t byteCount; - | ^~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] - 305 | filterArray(byteBuffer, byteCount,compressed); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here - 132 | const void* byteBuffer; - | ^~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.hpp:30, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCV::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:85:47: warning: unused parameter 'position' [-Wunused-parameter] - 85 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerUserParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:136:47: warning: unused parameter 'position' [-Wunused-parameter] - 136 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerCVParam::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:195:47: warning: unused parameter 'position' [-Wunused-parameter] - 195 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerParamContainer::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:267:47: warning: unused parameter 'position' [-Wunused-parameter] - 267 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerFileDescription::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:504:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 504 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:505:47: warning: unused parameter 'position' [-Wunused-parameter] - 505 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerComponentList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:697:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 697 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:698:47: warning: unused parameter 'position' [-Wunused-parameter] - 698 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerDataProcessing::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:970:47: warning: unused parameter 'position' [-Wunused-parameter] - 970 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerScanSettings::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1083:47: warning: unused parameter 'position' [-Wunused-parameter] - 1083 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.hpp:32, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:28: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerProduct::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1359:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 1359 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:1360:47: warning: unused parameter 'position' [-Wunused-parameter] - 1360 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumListBase.hpp:28, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.hpp:29, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MSn.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:86:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 86 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:87:47: warning: unused parameter 'position' [-Wunused-parameter] - 87 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexListOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:95:45: warning: unused parameter 'position' [-Wunused-parameter] - 95 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:120:47: warning: unused parameter 'position' [-Wunused-parameter] - 120 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerOffset::characters(const pwiz::minimxml::SAXParser::saxstring&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:165:45: warning: unused parameter 'position' [-Wunused-parameter] - 165 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerIndexList::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Index_mzML.cpp:201:47: warning: unused parameter 'position' [-Wunused-parameter] - 201 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::HandlerIndexedMZML::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:278:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 278 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzML.cpp:279:47: warning: unused parameter 'position' [-Wunused-parameter] - 279 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp: In function 'std::string pwiz::msdata::id::translateNativeIDToScanNumber(pwiz::cv::CVID, const std::string&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:582:13: warning: this statement may fall through [-Wimplicit-fallthrough=] - 582 | if (id.find("controllerType=0 controllerNumber=1") != 0) - | ^~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.cpp:587:9: note: here - 587 | case MS_Bruker_Agilent_YEP_nativeID_format: - | ^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrum::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2641:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 2641 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerSpectrumListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2957:47: warning: unused parameter 'position' [-Wunused-parameter] - 2957 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerChromatogramListSimple::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3087:47: warning: unused parameter 'position' [-Wunused-parameter] - 3087 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::IO::HandlerMSData::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3417:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 3417 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:3335:47: warning: unused parameter 'position' [-Wunused-parameter] - 3335 | stream_offset position) - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In function 'std::vector pwiz::msdata::{anonymous}::getPrecursorInfo(const pwiz::msdata::Spectrum&, pwiz::msdata::SpectrumListPtr, pwiz::cv::CVID)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:456:62: warning: unused parameter 'spectrumListPtr' [-Wunused-parameter] - 456 | const SpectrumListPtr spectrumListPtr, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::msdata::{anonymous}::HandlerScanFileContent::startElement(const std::string&, const pwiz::minimxml::SAXParser::Handler::Attributes&, pwiz::minimxml::SAXParser::Handler::stream_offset)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1037:47: warning: unused parameter 'position' [-Wunused-parameter] 1037 | stream_offset position) @@ -3720,132 +3838,21 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_mzXML.cpp:1363:47: warning: unused parameter 'position' [-Wunused-parameter] 1363 | stream_offset position) | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::BinaryDataArray]': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2106:49: required from here - 2106 | readMzMLbBinaryDataArray(this->binaryDataArray); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] - 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp: In instantiation of 'void pwiz::msdata::IO::HandlerBinaryDataArray::readMzMLbBinaryDataArray(BinaryDataArrayType*) [with BinaryDataArrayType = pwiz::msdata::IntegerDataArray]': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2132:49: required from here - 2132 | readMzMLbBinaryDataArray(this->integerDataArray); - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/IO.cpp:2409:56: warning: unused parameter 'binaryDataArray' [-Wunused-parameter] - 2409 | void readMzMLbBinaryDataArray(BinaryDataArrayType* binaryDataArray) - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp: In member function 'void pwiz::msdata::Serializer_MSn::write(std::ostream&, const pwiz::msdata::MSData&, const pwiz::util::IterationListenerRegistry*, bool, bool) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:10: warning: unused parameter 'useWorkerThreads' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MSn.cpp:552:33: warning: unused parameter 'continueOnError' [-Wunused-parameter] - 552 | bool useWorkerThreads, bool continueOnError) const - | ~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.hpp:27, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.cpp:25: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:28: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::processingInstruction(const std::string&, const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:585:61: warning: unused parameter 'name' [-Wunused-parameter] - 585 | virtual Status processingInstruction(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/Serializer_MGF.hpp:29: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:586:61: warning: unused parameter 'data' [-Wunused-parameter] - 586 | const std::string& data, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:587:56: warning: unused parameter 'position' [-Wunused-parameter] - 587 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::startElement(const std::string&, const Attributes&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:589:52: warning: unused parameter 'name' [-Wunused-parameter] - 589 | virtual Status startElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:590:51: warning: unused parameter 'attributes' [-Wunused-parameter] - 590 | const Attributes& attributes, - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:591:47: warning: unused parameter 'position' [-Wunused-parameter] - 591 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::endElement(const std::string&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:593:50: warning: unused parameter 'name' [-Wunused-parameter] - 593 | virtual Status endElement(const std::string& name, - | ~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:594:45: warning: unused parameter 'position' [-Wunused-parameter] - 594 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp: In member function 'virtual pwiz::minimxml::SAXParser::Handler::Status pwiz::minimxml::SAXParser::Handler::characters(const pwiz::minimxml::SAXParser::saxstring&, stream_offset)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:596:59: warning: unused parameter 'text' [-Wunused-parameter] - 596 | virtual Status characters(const SAXParser::saxstring& text, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.hpp:597:45: warning: unused parameter 'position' [-Wunused-parameter] - 597 | stream_offset position) {return Status::Ok;} - | ~~~~~~~~~~~~~~^~~~~~~~ -[ 86%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/minimxml/XMLWriter.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/XMLWriter.cpp -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp: In static member function 'static size_t pwiz::msdata::{anonymous}::SpectrumList_MGFImpl::FindEndTag(const std::string&, size_t)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumList_MGF.cpp:353:27: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] - 353 | for (int i = 0; i < sizeof(endTagsCCSInTitle) / sizeof(endTagsCCSInTitle[0]); i++) - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 87%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IterationListener.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.cpp -[ 88%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Base64.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Base64.cpp -[ 90%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/SHA1.cpp -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, - from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] - 769 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] - 853 | virtual void warn_once(const char* msg) const {} - | ~~~~~~~~~~~~^~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:303:52: warning: unused parameter 'filepath' [-Wunused-parameter] - 303 | force_close_handles_to_filepath(const std::string &filepath, - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:304:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] - 304 | bool closeMemoryMappedSections) noexcept(true) - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:859:33: warning: unused parameter 'path' [-Wunused-parameter] - 859 | check_path_length(const string &path) - | ~~~~~~~~~~~~~~^~~~ -[ 91%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/SHA1Calculator.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/SHA1Calculator.cpp -[ 92%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/random_access_compressed_ifstream.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp -[ 93%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/BinaryData.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.cpp [ 95%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/IntegerSet.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] - 337 | mru_list taskMRU_; - | ^~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] - 334 | bool continueOnError_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] - 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) - | ^~~~ -[ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/String.cpp -[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] + 305 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:131:12: note: 'byteCount' was declared here + 131 | size_t byteCount; + | ^~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteBuffer' may be used uninitialized [-Wmaybe-uninitialized] + 305 | filterArray(byteBuffer, byteCount,compressed); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here + 132 | const void* byteBuffer; + | ^~~~~~~~~~ In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.cpp:24: /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.hpp: In instantiation of 'const T& pwiz::util::BinaryData::at(size_type) const [with T = double; const_reference = const double&; size_type = long unsigned int]': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.cpp:498:30: required from here @@ -4015,14 +4022,23 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/BinaryData.hpp:85:9: note: because 'pwiz::util::BinaryData::const_iterator' has user-provided 'pwiz::util::BinaryData::const_iterator::const_iterator(const pwiz::util::BinaryData::const_iterator&) [with T = long int]' 85 | const_iterator(const const_iterator& rhs) : current_(rhs.current_) {} | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.cpp:27: -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp: In member function 'virtual pwiz::util::IterationListener::Status pwiz::util::IterationListener::update(const UpdateMessage&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IterationListener.hpp:60:48: warning: unused parameter 'updateMessage' [-Wunused-parameter] - 60 | virtual Status update(const UpdateMessage& updateMessage) {return Status_Ok;} - | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +[ 96%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/String.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/String.cpp +[ 97%] Building CXX object src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o +cd /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DWITHOUT_MZ5 -DWITHOUT_MZMLB -I/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/src -I/build/reproducible-path/libpwizlite-3.0.11/src -I/build/reproducible-path/libpwizlite-3.0.11/src/boost -g -O2 -ffile-prefix-map=/build/reproducible-path/libpwizlite-3.0.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++17 -Wno-unknown-pragmas -Wall -Wextra -fPIC -Wall -MD -MT src/CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -MF CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o.d -o CMakeFiles/pwizlite-static.dir/pwiz/utility/misc/Filesystem.cpp.o -c /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:51:21: warning: WIN32 is NOT defined 51 | #pragma GCC warning "WIN32 is NOT defined" | ^~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.hpp:26, + from /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:26: +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::SpectrumListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:769:40: warning: unused parameter 'msg' [-Wunused-parameter] + 769 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp: In member function 'virtual void pwiz::msdata::ChromatogramListSimple::warn_once(const char*) const': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/MSData.hpp:853:40: warning: unused parameter 'msg' [-Wunused-parameter] + 853 | virtual void warn_once(const char* msg) const {} + | ~~~~~~~~~~~~^~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp: In member function 'void pwiz::msdata::BinaryDataEncoder::Impl::encode(const double*, size_t, std::string&, size_t*)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:305:37: warning: 'byteCount' may be used uninitialized [-Wmaybe-uninitialized] 305 | filterArray(byteBuffer, byteCount,compressed); @@ -4036,6 +4052,16 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/BinaryDataEncoder.cpp:132:17: note: 'byteBuffer' was declared here 132 | const void* byteBuffer; | ^~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp: In constructor 'pwiz::msdata::SpectrumWorkerThreads::Impl::Impl(const pwiz::msdata::SpectrumList&, bool, bool)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:337:22: warning: 'pwiz::msdata::SpectrumWorkerThreads::Impl::taskMRU_' will be initialized after [-Wreorder] + 337 | mru_list taskMRU_; + | ^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:334:10: warning: 'bool pwiz::msdata::SpectrumWorkerThreads::Impl::continueOnError_' [-Wreorder] + 334 | bool continueOnError_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/data/msdata/SpectrumWorkerThreads.cpp:60:5: warning: when initialized here [-Wreorder] + 60 | Impl(const SpectrumList& sl, bool useWorkerThreads, bool continueOnError) + | ^~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp: In member function 'void pwiz::util::IntegerSet::insert(Interval)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/IntegerSet.cpp:138:79: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 138 | if (eraseBegin != intervals_.end() && eraseBegin->begin <= interval.begin && eraseBegin->end >= interval.end || @@ -4052,13 +4078,6 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/random_access_compressed_ifstream.cpp:1199:137: warning: unused parameter 'Mode' [-Wunused-parameter] 1199 | std::streampos chunky_streambuf::my_seekg(boost::iostreams::stream_offset offset, std::ios_base::seekdir whence,std::ios_base::openmode Mode) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] - 549 | if (inCDATA) - | ^~ -/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here - 501 | bool inCDATA; - | ^~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:303:52: warning: unused parameter 'filepath' [-Wunused-parameter] 303 | force_close_handles_to_filepath(const std::string &filepath, @@ -4070,6 +4089,24 @@ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:859:33: warning: unused parameter 'path' [-Wunused-parameter] 859 | check_path_length(const string &path) | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::force_close_handles_to_filepath(const std::string&, bool)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:303:52: warning: unused parameter 'filepath' [-Wunused-parameter] + 303 | force_close_handles_to_filepath(const std::string &filepath, + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:304:38: warning: unused parameter 'closeMemoryMappedSections' [-Wunused-parameter] + 304 | bool closeMemoryMappedSections) noexcept(true) + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp: In function 'void pwiz::util::check_path_length(const std::string&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/misc/Filesystem.cpp:859:33: warning: unused parameter 'path' [-Wunused-parameter] + 859 | check_path_length(const string &path) + | ~~~~~~~~~~~~~~^~~~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] + 549 | if (inCDATA) + | ^~ +/build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:501:14: note: 'inCDATA' was declared here + 501 | bool inCDATA; + | ^~~~~~~ /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp: In function 'void pwiz::minimxml::SAXParser::parse(std::istream&, Handler&)': /build/reproducible-path/libpwizlite-3.0.11/src/pwiz/utility/minimxml/SAXParser.cpp:549:17: warning: 'inCDATA' may be used uninitialized [-Wmaybe-uninitialized] 549 | if (inCDATA) @@ -4093,12 +4130,12 @@ make[2]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' - dh_auto_test -O--build-system=cmake +dh: command-omitted: The call to "dh_auto_test -O--build-system=cmake" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--build-system=cmake dh_prep -O--build-system=cmake dh_auto_install -O--build-system=cmake - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.11/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/libpwizlite-3.0.11/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libpwizlite-3.0.11 -B/build/reproducible-path/libpwizlite-3.0.11/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4135,9 +4172,9 @@ dh_gencontrol -O--build-system=cmake dh_md5sums -O--build-system=cmake dh_builddeb -O--build-system=cmake -dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.11-1_amd64.deb'. -dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.11-1_amd64.deb'. dpkg-deb: building package 'libpwizlite3t64-dbgsym' in '../libpwizlite3t64-dbgsym_3.0.11-1_amd64.deb'. +dpkg-deb: building package 'libpwizlite3t64' in '../libpwizlite3t64_3.0.11-1_amd64.deb'. +dpkg-deb: building package 'libpwizlite-dev' in '../libpwizlite-dev_3.0.11-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libpwizlite_3.0.11-1_amd64.buildinfo dpkg-genchanges --build=binary -O../libpwizlite_3.0.11-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4145,12 +4182,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3470670/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1331650 and its subdirectories -I: Current time: Sat Nov 1 08:10:09 -12 2025 -I: pbuilder-time-stamp: 1762027809 +I: removing directory /srv/workspace/pbuilder/3470670 and its subdirectories +I: Current time: Sat Dec 5 16:39:56 +14 2026 +I: pbuilder-time-stamp: 1796438396