Diff of the two buildlogs: -- --- b1/build.log 2025-09-05 17:36:34.056126246 +0000 +++ b2/build.log 2025-09-05 18:16:14.739028561 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 8 11:36:34 -12 2026 -I: pbuilder-time-stamp: 1791502594 +I: Current time: Sat Sep 6 07:36:36 +14 2025 +I: pbuilder-time-stamp: 1757093796 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -32,53 +32,85 @@ dpkg-source: info: applying openmm_version_skip.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2390347/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 5 17:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0402e4b4b759404192b70b394f5ba9c8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2390347' - PS1='# ' - PS2='> ' + INVOCATION_ID=e909067147f34db68504834506674063 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1469876 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QKG1X7KZ/pbuilderrc_AQnJ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QKG1X7KZ/b1 --logfile b1/build.log mdtraj_1.11.0-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QKG1X7KZ/pbuilderrc_2WCw --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QKG1X7KZ/b2 --logfile b2/build.log mdtraj_1.11.0-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2390347/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -482,7 +514,7 @@ Get: 306 http://deb.debian.org/debian forky/main amd64 python3-tables-lib amd64 3.10.2-2+b1 [503 kB] Get: 307 http://deb.debian.org/debian forky/main amd64 python3-tables all 3.10.2-2 [353 kB] Get: 308 http://deb.debian.org/debian forky/main amd64 python3-versioneer all 0.29-1 [43.0 kB] -Fetched 221 MB in 8s (28.4 MB/s) +Fetched 221 MB in 4s (54.8 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -1473,8 +1505,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Oct 8 23:39:45 UTC 2026. -Universal Time is now: Thu Oct 8 23:39:45 UTC 2026. +Local time is now: Fri Sep 5 17:42:30 UTC 2025. +Universal Time is now: Fri Sep 5 17:42:30 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1757,7 +1789,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mdtraj-1.11.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mdtraj_1.11.0-1_source.changes +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mdtraj-1.11.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mdtraj_1.11.0-1_source.changes dpkg-buildpackage: info: source package mdtraj dpkg-buildpackage: info: source version 1.11.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1994,107 +2030,107 @@ running build running build_py creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj -copying mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj -copying mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj copying mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj -creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats -creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils -creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr -copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr -copying mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr -copying mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr +copying mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj +copying mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj +creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core +copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core +copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core +copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core +copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core +copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core +copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry +copying mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry copying mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -copying mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry -creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core -copying mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core -copying mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core -copying mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core -copying mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core -copying mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core -copying mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts -copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts copying mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts +copying mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts +creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats +copying mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters -copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters -copying mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters -copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters +copying mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters +copying mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters +copying mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters copying mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters +creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr +copying mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr +copying mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr +copying mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr +creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils +copying mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing -copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing +copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing copying mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing -copying mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing +copying mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx -copying mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx -copying mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx -copying mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx copying mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx +copying mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx +copying mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx +copying mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb -copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb copying mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb +copying mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit -copying mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit copying mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit +copying mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data -copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data copying mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data +copying mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data UPDATING /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py set /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py to '1.11.0' running build_ext @@ -3564,7 +3600,7 @@ XFAIL tests/test_trajectory.py::test_unitcell[lammpstrj] - reason: lammpstrj seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[ncrst] - reason: ncrst seems to need unit vectors XFAIL tests/test_trajectory.py::test_unitcell[rst7] - reason: rst7 seems to need unit vectors -= 975 passed, 103 skipped, 22 deselected, 61 xfailed, 1 warning in 355.84s (0:05:55) = += 975 passed, 103 skipped, 22 deselected, 61 xfailed, 1 warning in 442.36s (0:07:22) = lugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness @@ -3583,7 +3619,7 @@ dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) dcdplugin) detected standard 32-bit DCD file of native endianness dcdplugin) CHARMM format DCD file (also NAMD 2.1 and later) - rm -fr -- /tmp/dh-xdg-rundir-8kYQo_ft + rm -fr -- /tmp/dh-xdg-rundir-VOe6h0JJ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -3865,315 +3901,315 @@ running install_lib creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/element.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/sasa.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dihedral.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/order.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/internal.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/pi_stacking.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdconvert.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdinspect.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lammpstrj.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxReader.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbxfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbx.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbxfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/PdbxContainers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/PdbxReader.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/pdbx.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/pdbx.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdbx/PdbxContainers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/openmmxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/psf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/arc.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/registry.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/prmtop.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/netcdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/lh5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/xyzfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hoomdxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/prmtop.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mol2.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/mdcrd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/registry.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lammpstrj.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/psf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/amberrst.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gsd.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/hdf5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/arc.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/xyzfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/netcdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/openmmxml.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/lh5.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/__pycache__/gro.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mol2.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbstructure.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/pdbfile.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__pycache__ creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/pdbNames.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbstructure.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/pdbfile.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/pdb/data/residues.xml -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/data +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gro.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hoomdxml.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/mdcrd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/hdf5.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/amberrst.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/formats/gsd.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/io.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/basedimension.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_math.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/standard_dimensions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/doctests.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/baseunit.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/prefix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_math.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/mymatrix.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/basedimension.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_definitions.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/unit_operators.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__pycache__/quantity.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/mymatrix.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_definitions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_math.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/prefix.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/baseunit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/constants.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/unit_operators.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/quantity.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/doctests.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unit/standard_dimensions.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/delay_import.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/singleton.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/validation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/zipped.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/unitcell.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils +creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/rotation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/contextmanagers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/unitcell.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/validation.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/delay_import.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/__pycache__/zipped.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/contextmanagers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__pycache__ -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/scalar_couplings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/shift_wrappers.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/scalar_couplings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__pycache__/shift_wrappers.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/nmr/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/contact.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rdf.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/thermodynamic_properties.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/pi_stacking.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rg.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/thermodynamic_properties.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dihedral.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/shape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/contact.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/hbond.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/internal.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/rdf.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/angle.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/sasa.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/order.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/shape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/pi_stacking.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/hbond.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dihedral.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/dssp.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/sasa.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/internal.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/rg.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/angle.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/alignment.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/distance.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/geometry/order.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/element.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/topology.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/residue_names.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/selection.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/element.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__pycache__/trajectory.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/trajectory.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/topology.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/residue_names.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/libtheobald.a -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/theobald_rmsd.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/lib/center.h -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/lib -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/core/selection.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdinspect.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__pycache__/mdconvert.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdinspect.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/scripts/mdconvert.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/basereporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/netcdfreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/dcdreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/hdf5reporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__pycache__/xtcreporter.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/netcdfreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/dcdreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/basereporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/xtcreporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/reporters/hdf5reporter.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_version.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/utils/rotation.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docstrings.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/testing.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/docscrape.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docscrape.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__pycache__ copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/testing.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/testing/docstrings.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/mdtraj/__init__.py -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/README.md -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/.gitignore -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/io.py to io.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbxfile.py to pdbxfile.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxReader.py to PdbxReader.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbx.py to pdbx.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxContainers.py to PdbxContainers.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-313.pyc +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/mdtraj-1.11.0/.pybuild/cpython3_3.13_mdtraj/build/.pytest_cache/README.md -> /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/.pytest_cache +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/topology.py to topology.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/selection.py to selection.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/element.py to element.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/pi_stacking.py to pi_stacking.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/order.py to order.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/shape.py to shape.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/distance.py to distance.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rg.py to rg.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/internal.py to internal.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/angle.py to angle.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/contact.py to contact.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/registry.py to registry.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/openmmxml.py to openmmxml.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/psf.py to psf.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/arc.py to arc.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/registry.py to registry.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lammpstrj.py to lammpstrj.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxContainers.py to PdbxContainers.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/PdbxReader.py to PdbxReader.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbxfile.py to pdbxfile.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdbx/pdbx.py to pdbx.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/prmtop.py to prmtop.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/netcdf.py to netcdf.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gro.py to gro.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/lh5.py to lh5.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/xyzfile.py to xyzfile.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mol2.py to mol2.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbfile.py to pdbfile.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/pdb/pdbstructure.py to pdbstructure.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gro.py to gro.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hoomdxml.py to hoomdxml.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/mdcrd.py to mdcrd.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/hdf5.py to hdf5.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/amberrst.py to amberrst.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/formats/gsd.py to gsd.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/_version.py to _version.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/io.py to io.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit.py to unit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/constants.py to constants.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_operators.py to unit_operators.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/quantity.py to quantity.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/doctests.py to doctests.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/standard_dimensions.py to standard_dimensions.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/delay_import.py to delay_import.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/basedimension.py to basedimension.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/mymatrix.py to mymatrix.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_definitions.py to unit_definitions.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/unit_math.py to unit_math.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/prefix.py to prefix.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unit/baseunit.py to baseunit.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/singleton.py to singleton.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/validation.py to validation.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/zipped.py to zipped.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/unitcell.py to unitcell.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/contextmanagers.py to contextmanagers.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/scalar_couplings.py to scalar_couplings.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/shift_wrappers.py to shift_wrappers.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/nmr/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/contact.py to contact.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rdf.py to rdf.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/thermodynamic_properties.py to thermodynamic_properties.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/shape.py to shape.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/pi_stacking.py to pi_stacking.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/hbond.py to hbond.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dihedral.py to dihedral.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/dssp.py to dssp.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/sasa.py to sasa.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/internal.py to internal.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/rg.py to rg.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/angle.py to angle.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/alignment.py to alignment.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/distance.py to distance.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/geometry/order.py to order.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/element.py to element.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/trajectory.py to trajectory.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/topology.py to topology.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/residue_names.py to residue_names.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/core/selection.py to selection.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdinspect.py to mdinspect.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/scripts/mdconvert.py to mdconvert.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/netcdfreporter.py to netcdfreporter.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/dcdreporter.py to dcdreporter.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/basereporter.py to basereporter.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/xtcreporter.py to xtcreporter.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/reporters/hdf5reporter.py to hdf5reporter.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/_version.py to _version.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/utils/rotation.py to rotation.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docscrape.py to docscrape.cpython-313.pyc byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/testing.py to testing.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/mdtraj-1.11.0/debian/python3-mdtraj/usr/lib/python3.13/dist-packages/mdtraj/testing/docstrings.py to docstrings.cpython-313.pyc running install_egg_info running egg_info creating mdtraj.egg-info @@ -4530,9 +4566,9 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/basic.css +Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/mdtraj-1.11.0/build/html/_static/js/versions.js copying static files: done copying extra files... @@ -4795,29 +4831,29 @@ debian/rules override_dh_sphinxdoc-indep make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' dh_sphinxdoc -i - ln -sf ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css - ln -sf ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css ln -sf ../../../../../sphinx_rtd_theme/static/js/theme.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/js/theme.js - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.ttf + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.woff2 - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf - ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot + ln -sf ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + ln -sf ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css + ln -sf ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js + ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/jquery/jquery.min.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/language_data.js - ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/.buildinfo mv debian/python-mdtraj-doc.substvars.new debian/python-mdtraj-doc.substvars mv debian/python-mdtraj-doc.substvars.new debian/python-mdtraj-doc.substvars @@ -4831,10 +4867,10 @@ dh_sphinxdoc -O--buildsystem=pybuild -Npython-mdtraj-doc dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -O--buildsystem=pybuild - install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj - install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian install -m0755 -d debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc install -p -m0644 debian/.debhelper/generated/python-mdtraj-doc/dh_installchangelogs.dch.trimmed debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/changelog.Debian + install -m0755 -d debian/python3-mdtraj/usr/share/doc/python3-mdtraj + install -p -m0644 debian/.debhelper/generated/python3-mdtraj/dh_installchangelogs.dch.trimmed debian/python3-mdtraj/usr/share/doc/python3-mdtraj/changelog.Debian dh_installexamples -O--buildsystem=pybuild dh_installexamples: warning: Cannot auto-detect main package for python-mdtraj-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/examples @@ -4864,10 +4900,10 @@ install -p -m0644 ./debian/mdinspect.1 debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 - mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 - chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 mv debian/python3-mdtraj/usr/share/man/man1/mdinspect.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdinspect.1 + mv debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1.dh-new debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 + chmod 0644 -- debian/python3-mdtraj/usr/share/man/man1/mdconvert-mdtraj.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250414 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] @@ -4878,8 +4914,8 @@ D: dh_python3 dh_python3:205: processing package python3-mdtraj... D: dh_python3 fs:50: moving files from debian/python3-mdtraj/usr/lib/python3.13/dist-packages to debian/python3-mdtraj/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache -I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdconvert-mdtraj +I: dh_python3 tools:114: replacing shebang in debian/python3-mdtraj/usr/bin/mdinspect D: dh_python3 fs:338: package python3-mdtraj details = {'requires.txt': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj-1.11.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-mdtraj D: dh_python3 pydist:175: trying to find dependency for numpy<3,>=1.25.0 (python=None) @@ -4894,7 +4930,7 @@ D: dh_python3 pydist:175: trying to find dependency for scipy (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3 (<< 3.14)', 'python3-numpy (>= 2.0.0~)', 'python3-packaging', 'python3:any', 'python3-scipy', 'python3 (>= 3.13~)', 'python3-pyparsing'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3 (>= 3.13~)', 'python3 (<< 3.14)', 'python3:any', 'python3-packaging', 'python3-pyparsing', 'python3-scipy', 'python3-numpy (>= 2.0.0~)'}; R=[]; S=[]; E=[], B=[]; RT=[] rm -f debian/python-mdtraj-doc.debhelper.log debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/mdtraj-1.11.0' @@ -4904,81 +4940,81 @@ # So clean up manually (assume the binary difference is not an issue) rm -f debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib/libtheobald.a for d in debian/python3-mdtraj/usr/lib/python3.*/dist-packages/mdtraj/core/lib; do if [-d $d]; then rmdir -p --ignore-fail-on-non-empty $d; fi; done -/bin/sh: 1: [-d: not found +/bin/sh: line 1: [-d: command not found make[1]: Leaving directory '/build/reproducible-path/mdtraj-1.11.0' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css + ln -s ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css + ln -s ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot + ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff2 ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff - ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.woff2 ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.ttf ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.ttf + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.woff2 ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff + ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.woff debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.woff rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.ttf ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.ttf - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg - ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Bold.woff2 - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf - ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Italic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Italic.ttf - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot - ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.eot debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.eot rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-Regular.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-Regular.ttf + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Bold.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Bold.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 + ln -s ../../../../../sphinx_rtd_theme/static/fonts/RobotoSlab-Regular.woff2 debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/RobotoSlab-Regular.woff2 + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf + ln -s ../../../../../sphinx_rtd_theme/static/fonts/Lato-BoldItalic.ttf debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/Lato-BoldItalic.ttf + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg + ln -s ../../../../../sphinx_rtd_theme/static/fonts/fontawesome-webfont.svg debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/fonts/fontawesome-webfont.svg rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/js/theme.js ln -s ../../../../../sphinx_rtd_theme/static/js/theme.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/js/theme.js - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css - ln -s ../../../../../sphinx_rtd_theme/static/css/theme.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/theme.css - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css - ln -s ../../../../../sphinx_rtd_theme/static/css/badge_only.css debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/css/badge_only.css - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js - ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js - rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js - ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/searchtools.js + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js + ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/sphinx_highlight.js + rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js + ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/doctools.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/language_data.js rm -f debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js ln -s ../../../../javascript/jquery/jquery.min.js debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/jquery.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1754933451 as canonical time - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_rmsd-drift_7_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_pca_9_0.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_clustering_11_0.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_ramachandran-plot_7_1.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/file.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo-small.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_hbonds_9_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_clustering_11_0.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_solvent-accessible-surface-area_10_0.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_native-contact_6_0.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_solvent-accessible-surface-area_8_0.png using File::StripNondeterminism::handlers::png Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_pca_12_0.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_hbonds_9_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo-small.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_pca_9_0.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_ramachandran-plot_7_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_rmsd-drift_7_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-mdtraj-doc/usr/share/doc/python-mdtraj-doc/html/_images/notebook-examples_solvent-accessible-surface-area_8_0.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-mdtraj cd debian/python-mdtraj-doc chmod a-x usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 - gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 - cd '/build/reproducible-path/mdtraj-1.11.0' chmod a-x usr/share/doc/python-mdtraj-doc/changelog.Debian usr/share/doc/python-mdtraj-doc/html/_static/example-trajectoryview-data.json usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo.xcf usr/share/doc/python-mdtraj-doc/html/notebook-examples/atom-selection.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/clustering.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/hbonds.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/iterload.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/native-contact.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/pca.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/pi_stacking.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/ramachandran-plot.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/rmsd-benchmark.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/rmsd-drift.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/solvent-accessible-surface-area.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/two-pass-clustering.ipynb + gzip -9nf usr/share/doc/python3-mdtraj/changelog.Debian usr/share/man/man1/mdconvert-mdtraj.1 usr/share/man/man1/mdinspect.1 gzip -9nf usr/share/doc/python-mdtraj-doc/changelog.Debian usr/share/doc/python-mdtraj-doc/html/_static/example-trajectoryview-data.json usr/share/doc/python-mdtraj-doc/html/_static/mdtraj_logo.xcf usr/share/doc/python-mdtraj-doc/html/notebook-examples/atom-selection.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/clustering.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/hbonds.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/iterload.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/native-contact.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/pca.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/pi_stacking.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/ramachandran-plot.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/rmsd-benchmark.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/rmsd-drift.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/solvent-accessible-surface-area.ipynb usr/share/doc/python-mdtraj-doc/html/notebook-examples/two-pass-clustering.ipynb cd '/build/reproducible-path/mdtraj-1.11.0' + cd '/build/reproducible-path/mdtraj-1.11.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-mdtraj ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-mdtraj-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s @@ -4998,41 +5034,16 @@ objcopy --compress-debug-sections debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug chmod 0644 -- debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-mdtraj.debug dh_strip -a -O--buildsystem=pybuild - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3/99757eec2f16632e08b48d075c869a70131e8d.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3/99757eec2f16632e08b48d075c869a70131e8d.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3/99757eec2f16632e08b48d075c869a70131e8d.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/25/7069b27bd3fb843ca2556c8fa93d6897dd963b.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/25/7069b27bd3fb843ca2556c8fa93d6897dd963b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/25/7069b27bd3fb843ca2556c8fa93d6897dd963b.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9/cee1ca75e9827b18f5220a47ffe386829108ac.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9/cee1ca75e9827b18f5220a47ffe386829108ac.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9/cee1ca75e9827b18f5220a47ffe386829108ac.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39/76c549034e00e88ae33b9380054a44522214e0.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39/76c549034e00e88ae33b9380054a44522214e0.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39/76c549034e00e88ae33b9380054a44522214e0.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02/674ee4fe3d36b1c4952af6fe970e63ae8149df.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02/674ee4fe3d36b1c4952af6fe970e63ae8149df.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02/674ee4fe3d36b1c4952af6fe970e63ae8149df.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43/1f3053bc69444329a5c5abc6990807b5e00a42.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43/1f3053bc69444329a5c5abc6990807b5e00a42.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43/1f3053bc69444329a5c5abc6990807b5e00a42.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so - install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72 - objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72/8051b59e9c89fe17af1d6809b8d94520367e60.debug - chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72/8051b59e9c89fe17af1d6809b8d94520367e60.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72/8051b59e9c89fe17af1d6809b8d94520367e60.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3/99757eec2f16632e08b48d075c869a70131e8d.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3/99757eec2f16632e08b48d075c869a70131e8d.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/e3/99757eec2f16632e08b48d075c869a70131e8d.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/fb/ca600d8c3cb975bb3570b836b8231d488369c5.debug chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/fb/ca600d8c3cb975bb3570b836b8231d488369c5.debug @@ -5048,6 +5059,31 @@ chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/36/9e899a60393cb54faca869743d50f2c2693423.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/36/9e899a60393cb54faca869743d50f2c2693423.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72/8051b59e9c89fe17af1d6809b8d94520367e60.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72/8051b59e9c89fe17af1d6809b8d94520367e60.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/72/8051b59e9c89fe17af1d6809b8d94520367e60.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9/cee1ca75e9827b18f5220a47ffe386829108ac.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9/cee1ca75e9827b18f5220a47ffe386829108ac.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/a9/cee1ca75e9827b18f5220a47ffe386829108ac.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02/674ee4fe3d36b1c4952af6fe970e63ae8149df.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02/674ee4fe3d36b1c4952af6fe970e63ae8149df.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/02/674ee4fe3d36b1c4952af6fe970e63ae8149df.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43/1f3053bc69444329a5c5abc6990807b5e00a42.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43/1f3053bc69444329a5c5abc6990807b5e00a42.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/43/1f3053bc69444329a5c5abc6990807b5e00a42.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39 + objcopy --only-keep-debug --compress-debug-sections debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39/76c549034e00e88ae33b9380054a44522214e0.debug + chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39/76c549034e00e88ae33b9380054a44522214e0.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.build-id/39/76c549034e00e88ae33b9380054a44522214e0.debug debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/core/lib/libtheobald.a install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-mdtraj/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-mdtraj/dbgsym-root/usr/lib/debug/.dwz @@ -5060,7 +5096,7 @@ rm -f debian/python3-mdtraj/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN - dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-mdtraj.substvars debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_rmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/_lprmsd.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/drid.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighborlist.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/_geometry.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/geometry/neighbors.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/trr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/xtc.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dtr.cpython-313-x86_64-linux-gnu.so debian/python3-mdtraj/usr/lib/python3/dist-packages/mdtraj/formats/dcd.cpython-313-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-mdtraj/DEBIAN/postinst @@ -5083,10 +5119,10 @@ echo misc:Pre-Depends= >> debian/python3-mdtraj.substvars install -m0755 -d debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/.debhelper/python3-mdtraj/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-mdtraj-dbgsym "-DDepends=python3-mdtraj (= \${binary:Version})" "-DDescription=debug symbols for python3-mdtraj" "-DBuild-Ids=02674ee4fe3d36b1c4952af6fe970e63ae8149df 257069b27bd3fb843ca2556c8fa93d6897dd963b 369e899a60393cb54faca869743d50f2c2693423 3976c549034e00e88ae33b9380054a44522214e0 431f3053bc69444329a5c5abc6990807b5e00a42 728051b59e9c89fe17af1d6809b8d94520367e60 a9cee1ca75e9827b18f5220a47ffe386829108ac d9e59f7b0a8561a7e6ac86685f0e75ed0f021f4c e399757eec2f16632e08b48d075c869a70131e8d fbca600d8c3cb975bb3570b836b8231d488369c5" -DSection=debug -UMulti-Arch -UReplaces -UBreaks -dpkg-gencontrol: warning: package python-mdtraj-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined - chmod 0644 -- debian/python-mdtraj-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-mdtraj/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-mdtraj -ldebian/changelog -Tdebian/python3-mdtraj.substvars -cdebian/control -Pdebian/python3-mdtraj +dpkg-gencontrol: warning: package python-mdtraj-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined + chmod 0644 -- debian/python-mdtraj-doc/DEBIAN/control chmod 0644 -- debian/python3-mdtraj/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-mdtraj/DEBIAN @@ -5103,8 +5139,8 @@ dpkg-deb --root-owner-group --build debian/.debhelper/python3-mdtraj/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-mdtraj-doc .. dpkg-deb: building package 'python3-mdtraj' in '../python3-mdtraj_1.11.0-1_amd64.deb'. -dpkg-deb: building package 'python-mdtraj-doc' in '../python-mdtraj-doc_1.11.0-1_all.deb'. dpkg-deb: building package 'python3-mdtraj-dbgsym' in '../python3-mdtraj-dbgsym_1.11.0-1_amd64.deb'. +dpkg-deb: building package 'python-mdtraj-doc' in '../python-mdtraj-doc_1.11.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../mdtraj_1.11.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../mdtraj_1.11.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -5113,12 +5149,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1469876/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2390347 and its subdirectories -I: Current time: Thu Oct 8 11:59:33 -12 2026 -I: pbuilder-time-stamp: 1791503973 +I: removing directory /srv/workspace/pbuilder/1469876 and its subdirectories +I: Current time: Sat Sep 6 08:16:14 +14 2025 +I: pbuilder-time-stamp: 1757096174