Diff of the two buildlogs:

--
--- b1/build.log	2025-10-23 05:34:00.642993266 +0000
+++ b2/build.log	2025-10-23 05:35:49.063115114 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Tue Nov 24 23:47:01 -12 2026
-I: pbuilder-time-stamp: 1795607221
+I: Current time: Thu Oct 23 19:34:02 +14 2025
+I: pbuilder-time-stamp: 1761197642
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz]
 I: copying local configuration
@@ -26,53 +26,85 @@
 dpkg-source: info: applying fix-gcc13-ftbfs.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/2303036/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos1-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Oct 23 05:34 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
-  DISTRIBUTION='forky'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.3.3(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 '
+  DIRSTACK=()
+  DISTRIBUTION=forky
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='52868c651e5b4c5fb77b4bd55f1a50f7'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='2303036'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=ee53f2a3a708476da4a6f45dd3ebdab0
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=2213037
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1GcgRxBK/pbuilderrc_2I26 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1GcgRxBK/b1 --logfile b1/build.log megahit_1.2.9-6.dsc'
-  SUDO_GID='110'
-  SUDO_HOME='/var/lib/jenkins'
-  SUDO_UID='105'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://213.165.73.152:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1GcgRxBK/pbuilderrc_CDq6 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1GcgRxBK/b2 --logfile b2/build.log megahit_1.2.9-6.dsc'
+  SUDO_GID=110
+  SUDO_HOME=/var/lib/jenkins
+  SUDO_UID=105
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://46.16.76.132:3128
 I: uname -a
-  Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Aug 10  2025 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/2303036/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -192,7 +224,7 @@
 Get: 74 http://deb.debian.org/debian forky/main amd64 dh-python all 6.20250414 [116 kB]
 Get: 75 http://deb.debian.org/debian forky/main amd64 python3-all amd64 3.13.7-1 [1048 B]
 Get: 76 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
-Fetched 39.4 MB in 6s (6956 kB/s)
+Fetched 39.4 MB in 0s (172 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libexpat1:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19898 files and directories currently installed.)
@@ -455,8 +487,8 @@
 Setting up tzdata (2025b-5) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Wed Nov 25 11:48:32 UTC 2026.
-Universal Time is now:  Wed Nov 25 11:48:32 UTC 2026.
+Local time is now:      Thu Oct 23 05:34:28 UTC 2025.
+Universal Time is now:  Thu Oct 23 05:34:28 UTC 2025.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up autotools-dev (20240727.1) ...
@@ -523,7 +555,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/megahit-1.2.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../megahit_1.2.9-6_source.changes
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for forky
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/megahit-1.2.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../megahit_1.2.9-6_source.changes
 dpkg-buildpackage: info: source package megahit
 dpkg-buildpackage: info: source version 1.2.9-6
 dpkg-buildpackage: info: source distribution unstable
@@ -567,8 +603,8 @@
 -- Found OpenMP_CXX: -fopenmp (found version "4.5")
 -- Found OpenMP: TRUE (found version "4.5")
 -- Build type: None: -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"'
--- Configuring done (5.6s)
--- Generating done (0.1s)
+-- Configuring done (0.9s)
+-- Generating done (0.0s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -585,126 +621,137 @@
 -- Build files have been written to: /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu
 make[1]: Leaving directory '/build/reproducible-path/megahit-1.2.9'
    dh_auto_build
-	cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1
+	cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1
 make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/megahit-1.2.9 -B/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
 make  -f CMakeFiles/Makefile2 all
 make[2]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 make  -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/depend
-make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
-cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core.dir/DependInfo.cmake "--color="
 make  -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/depend
 make  -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/depend
+make  -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/depend
 make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
+cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
-cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake "--color="
-make  -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/depend
 cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core_popcnt.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_toolkit.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
+cd /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9 /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu /build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake "--color="
 make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 make  -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/build
 make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
+make  -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/build
+make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 make  -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/build
+make  -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/build
 make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 /usr/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit
-make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
-make  -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/build
+make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 [  1%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o
+[  2%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o
+[  3%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o
+[  4%] Building CXX object CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main.cpp
-[  3%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o
-[  3%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o
+[  6%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o
+[  6%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o
+[  8%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o
+[  8%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_assemble.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_buildlib.cpp
-[  4%] Building CXX object CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o
+[  9%] Building CXX object CMakeFiles/megahit_core.dir/src/main.cpp.o
+[  9%] Building CXX object CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o
+[ 10%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o
+[ 10%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o
+[ 11%] Building CXX object CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o
+[ 12%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_buildlib.cpp
+[ 17%] Building CXX object CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o
+[ 17%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o
+[ 17%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o
+[ 17%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_assemble.cpp
-[  6%] Building CXX object CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o
-[  6%] Building CXX object CMakeFiles/megahit_core.dir/src/main.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_assemble.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_buildlib.cpp
+[ 18%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main.cpp
-[  7%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o
-[  8%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o
-[  9%] Building CXX object CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp
-[ 10%] Building CXX object CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_iterate.cpp
-[  7%] Building CXX object CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/utils/options_description.cpp
-[ 11%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o
-[ 12%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o
+[ 20%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o
+[ 20%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_buildlib.cpp
+[ 21%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o
+[ 22%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o
+[ 23%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_iterate.cpp
+[ 25%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o
+[ 25%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o
+[ 27%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_iterate.cpp
-[ 14%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp
+[ 28%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_iterate.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp
+[ 26%] Building CXX object CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o
+[ 30%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o
+[ 17%] Building CXX object CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o
+[ 30%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp
-[ 14%] Built target megahit_toolkit
-[ 14%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o
-[ 15%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp
-[ 16%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp
-[ 13%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp
-[ 18%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o
-[ 19%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o
-[ 20%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp
-[ 17%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp
-[ 21%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o
-[ 22%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o
-[ 23%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp
-[ 24%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o
-[ 26%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o
-[ 26%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o
-[ 27%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o
-make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
-make  -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/build
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/utils/options_description.cpp
-make[3]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
+[ 30%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o
+[ 32%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o
+[ 32%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp
+[ 33%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o
+[ 34%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/utils/options_description.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/utils/options_description.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp
+[ 34%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp
-[ 28%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o
-[ 30%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp
+[ 35%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp
+[ 35%] Built target megahit_toolkit
+[ 36%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp
+[ 37%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o
+[ 38%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp
-[ 31%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o
-[ 32%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o
+[ 39%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp
+[ 40%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp
+[ 41%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp
-[ 33%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o
+[ 42%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp
+[ 43%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp
+[ 44%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp
-[ 34%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o
+[ 45%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp
-[ 35%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o
-[ 36%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o
-[ 36%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o
-[ 36%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp
-[ 37%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o
-[ 38%] Building CXX object CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o
-[ 39%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp
-[ 40%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp
-[ 41%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o
 In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
                  from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
@@ -719,7 +766,6 @@
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:24:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    24 | struct Hash<int8_t> : public std::unary_function<int8_t, uint64_t> {
       |                                   ^~~~~~~~~~~~~~
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_assemble.cpp
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -765,14 +811,15 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9:
+In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
 In file included from /usr/include/c++/15/bits/refwrap.h:41,
                  from /usr/include/c++/15/deque:69,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14:
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -824,15 +871,15 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9:
+In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
 In file included from /usr/include/c++/15/bits/refwrap.h:41,
-                 from /usr/include/c++/15/deque:69,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13:
+                 from /usr/include/c++/15/vector:70,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -884,15 +931,14 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9:
+In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
 In file included from /usr/include/c++/15/bits/refwrap.h:41,
                  from /usr/include/c++/15/deque:69,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13:
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -944,17 +990,15 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 42%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_buildlib.cpp
-In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9:
+In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
 In file included from /usr/include/c++/15/bits/refwrap.h:41,
-                 from /usr/include/c++/15/vector:70,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13:
+                 from /usr/include/c++/15/deque:69,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -1006,8 +1050,14 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 43%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_iterate.cpp
+[ 46%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp
+[ 47%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp
+[ 48%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp
+[ 49%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp
 In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
                  from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15,
                  from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9:
@@ -1068,24 +1118,31 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 43%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp
-[ 44%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp
-[ 44%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_local_assemble.cpp
-[ 45%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/main_sdbg_build.cpp
-[ 46%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp
-In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10:
+[ 50%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp
+[ 51%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp
+[ 52%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp
+[ 53%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp
+[ 54%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp
+[ 54%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp
+[ 55%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp
+[ 56%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp
+In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
-In file included from /usr/include/c++/15/string:51,
-                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25,
-                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1:
+In file included from /usr/include/c++/15/bits/refwrap.h:41,
+                 from /usr/include/c++/15/deque:69,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -1137,40 +1194,14 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 47%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp
-[ 48%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp
-[ 49%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/utils/options_description.cpp
-[ 50%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp
-[ 51%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/bubble_remover.cpp
-[ 52%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/contig_output.cpp
-[ 53%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/low_depth_remover.cpp
-[ 54%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp
-[ 55%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/sdbg_pruning.cpp
-[ 56%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/tip_remover.cpp
-[ 57%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp
-[ 58%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp
-[ 59%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp
 In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10:
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
-In file included from /usr/include/c++/15/string:51,
-                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25,
-                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1:
+In file included from /usr/include/c++/15/bits/refwrap.h:41,
+                 from /usr/include/c++/15/deque:69,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -1222,36 +1253,21 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 60%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o
-[ 61%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp
-[ 62%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/unitig_graph.cpp
-[ 63%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/assembly/weak_link_remover.cpp
-[ 64%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp
-[ 65%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp
-[ 66%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp
-[ 67%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp
-[ 68%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp
-[ 69%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/idba/sequence.cpp
-[ 69%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp
+[ 57%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_meta.cpp
+[ 57%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp
+[ 58%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp
 In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.cpp:9:
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
 In file included from /usr/include/c++/15/bits/refwrap.h:41,
-                 from /usr/include/c++/15/deque:69,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:14:
+                 from /usr/include/c++/15/vector:70,
+                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -1303,25 +1319,30 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 70%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp
-[ 71%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp
-[ 72%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp
-[ 72%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp
-[ 73%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp
-In file included from /build/reproducible-path/megahit-1.2.9/src/idba/hash_table.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:20,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.cpp:9:
+[ 59%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp
+[ 60%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp
+[ 61%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp
+[ 62%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp
+[ 63%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp
+[ 64%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp
+[ 65%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp
+[ 66%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sdbg/sdbg_writer.cpp
+In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
+                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
-In file included from /usr/include/c++/15/bits/refwrap.h:41,
-                 from /usr/include/c++/15/deque:69,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/hash_graph.h:13:
+In file included from /usr/include/c++/15/string:51,
+                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25,
+                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -1373,27 +1394,36 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 74%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp
-[ 75%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp
-[ 76%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp
-[ 77%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp
-[ 78%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp
-[ 79%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp
+[ 67%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp
+[ 68%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp
+[ 69%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o
+[ 70%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/hash_mapper.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp
+[ 71%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp
+[ 72%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp
+[ 73%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o
+[ 74%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp
+[ 75%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp
+[ 76%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp
+[ 77%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp
 In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:15,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp:9:
+                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
    19 | struct Hash : public std::unary_function<T, uint64_t> {
       |                           ^~~~~~~~~~~~~~
-In file included from /usr/include/c++/15/bits/refwrap.h:41,
-                 from /usr/include/c++/15/vector:70,
-                 from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph_branch_group.h:13:
+In file included from /usr/include/c++/15/string:51,
+                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.h:25,
+                 from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:1:
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
@@ -1445,34 +1475,10 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 80%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp
-[ 81%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp
-[ 82%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/filter_by_len.cpp
-[ 83%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp
-[ 84%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/filter_by_len.cpp
-[ 85%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp
-[ 86%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp
-[ 87%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/fastx_reader.cpp
-[ 88%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp
-[ 89%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sequence/io/sequence_lib.cpp
-[ 90%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp
-[ 91%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o
+[ 78%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp
-[ 92%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o
+[ 79%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp
-[ 93%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o
-/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp
 In file included from /build/reproducible-path/megahit-1.2.9/src/idba/contig_graph.h:22,
                  from /build/reproducible-path/megahit-1.2.9/src/localasm/local_assemble.cpp:10:
 /build/reproducible-path/megahit-1.2.9/src/idba/hash.h:19:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
@@ -1532,26 +1538,56 @@
 /usr/include/c++/15/bits/stl_function.h:117:12: note: declared here
   117 |     struct unary_function
       |            ^~~~~~~~~~~~~~
-[ 94%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o
+[ 80%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/base_engine.cpp
+[ 81%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp
+[ 82%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp
-[ 94%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o
-[ 95%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o
+[ 83%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp
+[ 83%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp
+[ 83%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmer_counter.cpp
+[ 84%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp
+[ 85%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/kmsort_selector.cpp
+[ 86%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp
+[ 87%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp
+[ 88%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp
-[ 96%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o
+[ 89%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/filter_by_len.cpp
-[ 97%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o
+[ 90%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o
+[ 91%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/filter_by_len.cpp
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp
+[ 92%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o
 /usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp
-[ 98%] Linking CXX executable megahit_core_no_hw_accel
-/usr/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_no_hw_accel.dir/link.txt --verbose=1
-/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -Wl,-z,relro -Wl,-z,now   -rdynamic -Wl,--dependency-file=CMakeFiles/megahit_core_no_hw_accel.dir/link.d CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o megahit_core_no_hw_accel  -lz
-make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
-[ 98%] Built target megahit_core_no_hw_accel
-[ 99%] Linking CXX executable megahit_core_popcnt
+[ 93%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp
+[ 94%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp
+[ 95%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/contigs_to_fastg.cpp
+[ 96%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/filter_by_len.cpp
+[ 97%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o
+/usr/bin/c++  -I/build/reproducible-path/megahit-1.2.9/src -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -c /build/reproducible-path/megahit-1.2.9/src/tools/read_stat.cpp
+[ 98%] Linking CXX executable megahit_core_popcnt
 /usr/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_popcnt.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -Wl,-z,relro -Wl,-z,now   -rdynamic -Wl,--dependency-file=CMakeFiles/megahit_core_popcnt.dir/link.d CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -o megahit_core_popcnt  -lz
 make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
-[ 99%] Built target megahit_core_popcnt
+[ 98%] Built target megahit_core_popcnt
+[ 99%] Linking CXX executable megahit_core_no_hw_accel
+/usr/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_no_hw_accel.dir/link.txt --verbose=1
+/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -Wl,-z,relro -Wl,-z,now   -rdynamic -Wl,--dependency-file=CMakeFiles/megahit_core_no_hw_accel.dir/link.d CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o megahit_core_no_hw_accel  -lz
+make[3]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
+[ 99%] Built target megahit_core_no_hw_accel
 [100%] Linking CXX executable megahit_core
 /usr/bin/cmake -E cmake_link_script CMakeFiles/megahit_core.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/megahit-1.2.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/build/reproducible-path/megahit-1.2.9/src"' -Wl,-z,relro -Wl,-z,now   -rdynamic -Wl,--dependency-file=CMakeFiles/megahit_core.dir/link.d CMakeFiles/megahit_core.dir/src/main.cpp.o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -o megahit_core  -lz
@@ -1573,7 +1609,7 @@
    create-stamp debian/debhelper-build-stamp
    dh_prep
    dh_auto_install --destdir=debian/megahit/
-	cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/megahit-1.2.9/debian/megahit AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true"
+	cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/megahit-1.2.9/debian/megahit AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true"
 make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/megahit-1.2.9 -B/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -1589,15 +1625,15 @@
 -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit
 -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/bin/megahit_toolkit
 -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data
--- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r2.il.fa.bz2
--- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/empty.fa
+-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/loop.fa
 -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r4.fa
--- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r1.il.fa.gz
+-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r2.il.fa.bz2
 -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/generate_random_fasta.py
--- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/ref.fa
--- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_2.fa
--- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/loop.fa
 -- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_1.fa
+-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r3_2.fa
+-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/ref.fa
+-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/empty.fa
+-- Installing: /build/reproducible-path/megahit-1.2.9/debian/megahit/usr/share/megahit/test_data/r1.il.fa.gz
 make[1]: Leaving directory '/build/reproducible-path/megahit-1.2.9/obj-x86_64-linux-gnu'
    debian/rules override_dh_install
 make[1]: Entering directory '/build/reproducible-path/megahit-1.2.9'
@@ -1623,8 +1659,8 @@
    dh_gencontrol
    dh_md5sums
    dh_builddeb
-dpkg-deb: building package 'megahit-dbgsym' in '../megahit-dbgsym_1.2.9-6_amd64.deb'.
 dpkg-deb: building package 'megahit' in '../megahit_1.2.9-6_amd64.deb'.
+dpkg-deb: building package 'megahit-dbgsym' in '../megahit-dbgsym_1.2.9-6_amd64.deb'.
  dpkg-genbuildinfo --build=binary -O../megahit_1.2.9-6_amd64.buildinfo
  dpkg-genchanges --build=binary -O../megahit_1.2.9-6_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1632,12 +1668,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2213037/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/2303036 and its subdirectories
-I: Current time: Tue Nov 24 23:56:59 -12 2026
-I: pbuilder-time-stamp: 1795607819
+I: removing directory /srv/workspace/pbuilder/2213037 and its subdirectories
+I: Current time: Thu Oct 23 19:35:48 +14 2025
+I: pbuilder-time-stamp: 1761197748