Diff of the two buildlogs: -- --- b1/build.log 2025-09-10 06:38:54.302289469 +0000 +++ b2/build.log 2025-09-10 06:51:25.847269438 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 9 18:26:51 -12 2025 -I: pbuilder-time-stamp: 1757485611 +I: Current time: Wed Oct 14 03:01:56 +14 2026 +I: pbuilder-time-stamp: 1791896516 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/75240/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 13 13:02 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='fd0ff6bd99b0455c95bba598a041f482' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='75240' - PS1='# ' - PS2='> ' + INVOCATION_ID=58b3ba63ca7f4599adca8fae5429acc0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3976317 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yaC5SnRq/pbuilderrc_oaYZ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yaC5SnRq/b1 --logfile b1/build.log mmseqs2_15-6f452+ds-2.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yaC5SnRq/pbuilderrc_5Awt --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yaC5SnRq/b2 --logfile b2/build.log mmseqs2_15-6f452+ds-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/75240/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -188,7 +220,7 @@ Get: 64 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 33.3 MB in 1s (50.7 MB/s) +Fetched 33.3 MB in 2s (21.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -467,7 +499,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-15-6f452+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_15-6f452+ds-2_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 15-6f452+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -547,7 +583,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.6s) +-- Configuring done (5.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -618,7 +654,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.7s) +-- Configuring done (2.5s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -689,7 +725,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.8s) +-- Configuring done (3.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -760,7 +796,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.3s) +-- Configuring done (2.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -831,7 +867,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.5s) +-- Configuring done (3.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -904,7 +940,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.6s) +-- Configuring done (3.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -924,7 +960,7 @@ make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true - cd build_avx2 && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2//CMakeFiles/progress.marks @@ -932,129 +968,133 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/lubksb.cpp.o -MF CMakeFiles/cacode.dir/lubksb.cpp.o.d -o CMakeFiles/cacode.dir/lubksb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/lubksb.cpp +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Building CXX object lib/cacode/CMakeFiles/cacode.dir/lambda_calculator.cpp.o +[ 6%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blosum62.out -[ 11%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatmatrix.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +[ 16%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html +[ 14%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -[ 15%] Generating ../generated/easycluster.sh.h -[ 16%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstat.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated @@ -1063,17 +1103,22 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 18%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h @@ -1083,58 +1128,189 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp +[ 19%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h -[ 17%] Linking CXX static library libversion.a -[ 17%] Generating ../generated/blastpgp.sh.h -[ 17%] Generating ../generated/map.sh.h -[ 17%] Generating ../generated/rbh.sh.h -[ 18%] Generating ../generated/blastp.sh.h -[ 19%] Generating ../generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -[ 20%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +[ 19%] Generating ../generated/map.sh.h +[ 19%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +[ 20%] Generating ../generated/searchtargetprofile.sh.h +[ 21%] Generating ../generated/cascaded_clustering.sh.h +[ 22%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +[ 22%] Built target version +[ 23%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +[ 23%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/result_viz_prelude.html.zst.h +[ 24%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 24%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 20%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h +[ 25%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 25%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp +[ 26%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h +[ 26%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/linsearch.sh.h +[ 26%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +[ 26%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 27%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp +[ 27%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +[ 27%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -1170,156 +1346,16 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h -[ 21%] Generating ../generated/cascaded_clustering.sh.h -[ 21%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 21%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linclust.sh.h -[ 22%] Generating ../generated/createindex.sh.h -[ 23%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp -[ 23%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -[ 24%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -[ 24%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 25%] Generating ../generated/taxpercontig.sh.h -[ 26%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh -[ 26%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -[ 26%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 26%] Generating ../generated/blastn.sh.h -[ 27%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h -[ 27%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -[ 27%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/tsv2exprofiledb.sh.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp -[ 27%] Generating ../generated/nucleotide_clustering.sh.h [ 27%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f 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src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated 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src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -[ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -[ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1525,7 +1565,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1558,9 +1598,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1667,10 +1711,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1703,12 +1744,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1742,7 +1784,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1778,8 +1821,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1812,15 +1855,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1853,10 +1889,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1890,7 +1927,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -1923,6 +1964,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: @@ -1958,14 +2001,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2001,7 +2040,43 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2036,10 +2111,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2074,9 +2148,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2109,8 +2184,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -2149,6 +2222,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2186,10 +2261,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2222,16 +2295,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2264,8 +2334,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: @@ -2303,9 +2371,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2340,9 +2406,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2378,8 +2445,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2412,9 +2478,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2447,12 +2519,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2485,6 +2558,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -2523,9 +2597,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2558,24 +2638,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2608,11 +2675,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2645,8 +2718,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp In file included from /usr/include/string.h:548, from /usr/include/c++/14/cstring:43, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, @@ -2659,8 +2732,11 @@ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2693,9 +2769,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2728,16 +2808,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2770,6 +2845,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, @@ -2806,11 +2883,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2843,12 +2923,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2881,18 +2961,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -2925,24 +2995,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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-[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3009,13 +3078,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3049,7 +3117,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3082,6 +3151,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -3118,8 +3189,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3154,9 +3223,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3189,9 +3262,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3224,10 +3298,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3261,7 +3335,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3295,11 +3369,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3332,21 +3402,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -3376,6 +3444,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3410,10 +3480,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3446,8 +3520,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3480,14 +3556,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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&& /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3523,10 +3591,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3560,7 +3626,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3593,9 +3659,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3628,8 +3695,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3664,10 +3729,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3700,6 +3765,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -3737,8 +3807,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3772,7 +3846,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3806,12 +3880,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3845,7 +3914,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3879,7 +3948,12 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3912,10 +3986,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -3948,8 +4021,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -3984,45 +4055,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: @@ -4042,7 +4074,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -4059,12 +4090,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4133,8 +4163,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering 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-DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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+cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4169,12 +4209,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4207,14 +4243,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4283,6 +4315,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -4319,6 +4355,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4353,16 +4393,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4395,11 +4434,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4432,8 +4474,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -4468,18 +4516,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4513,15 +4554,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4554,6 +4587,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -4583,12 +4623,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4621,12 +4657,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4659,8 +4691,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4694,9 +4729,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4729,8 +4762,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4797,11 +4834,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4835,11 +4873,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4872,16 +4906,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4914,10 +4944,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -4950,6 +4988,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -4987,14 +5029,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5027,12 +5065,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5065,15 +5105,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { | ^~~~~~~~~~~~~~~~~~~~~ -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5146,8 +5182,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5180,10 +5218,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5216,14 +5254,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5256,10 +5288,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5292,12 +5324,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5330,6 +5360,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5364,16 +5396,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -5436,10 +5466,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5474,8 +5512,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5517,7 +5557,7 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5551,8 +5591,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5585,14 +5624,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5626,7 +5659,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5660,8 +5694,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5694,14 +5729,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5734,8 +5764,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5768,10 +5800,22 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5804,6 +5848,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5838,10 +5886,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -5877,10 +5921,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5913,18 +5954,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 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object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -5958,7 +6002,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6025,18 +6069,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6070,7 +6104,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6103,10 +6137,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6139,6 +6171,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -6176,7 +6212,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6209,25 +6245,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6260,6 +6279,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -6293,16 +6314,20 @@ 100 | SeqProf(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -6331,10 +6356,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6369,8 +6394,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6406,7 +6434,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6439,8 +6468,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6473,9 +6510,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6509,7 +6547,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6542,8 +6581,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6576,12 +6619,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6614,11 +6653,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6651,13 +6694,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6691,11 +6730,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6733,7 +6768,7 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6767,8 +6802,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6801,8 +6835,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -6835,8 +6877,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -6871,10 +6911,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o @@ -7021,7 +7057,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7055,9 +7093,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7182,7 +7218,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' - cd build_avx && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_avx && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E 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-MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogproblim.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp +[ 15%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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/build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +[ 17%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +[ 18%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp -[ 17%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h +[ 18%] Generating ../generated/blastpgp.sh.h +[ 18%] Generating ../generated/rbh.sh.h [ 19%] Linking CXX static library libversion.a -[ 19%] Generating ../generated/map.sh.h -[ 19%] Generating ../generated/blastpgp.sh.h -[ 19%] Generating ../generated/blastp.sh.h -[ 19%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -[ 20%] Generating ../generated/linclust.sh.h +[ 19%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] @@ -7427,259 +7458,268 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 19%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 19%] Built target version +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 19%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +[ 20%] Linking C static library libtinyexpr.a +[ 21%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 21%] Built target cacode +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -[ 20%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 20%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h +[ 21%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/easyrbh.sh.h -[ 21%] Generating ../generated/cascaded_clustering.sh.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a +[ 22%] Generating ../generated/cascaded_clustering.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 22%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h -[ 23%] Generating ../generated/createtaxdb.sh.h -[ 23%] Built target version -[ 24%] Generating ../generated/searchtargetprofile.sh.h -[ 24%] Generating ../generated/update_clustering.sh.h -[ 24%] Generating ../generated/createindex.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/map.sh.h +[ 22%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h -[ 24%] Generating ../generated/translated_search.sh.h -[ 26%] Generating ../generated/multihitdb.sh.h -[ 26%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h +[ 22%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +[ 23%] Generating ../generated/update_clustering.sh.h +[ 24%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +[ 24%] Generating ../generated/taxonomy.sh.h +[ 25%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/rbh.sh.h +[ 26%] Generating ../generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -[ 26%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -[ 26%] Built target microtar +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +[ 27%] Generating ../generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 27%] Generating ../generated/multihitsearch.sh.h +[ 28%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h +[ 28%] Generating ../generated/enrich.sh.h +[ 28%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -[ 26%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h +[ 28%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -[ 26%] Generating ../generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -[ 27%] Linking C static library libtinyexpr.a -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -[ 27%] Generating ../generated/taxonomy.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 27%] Built target cacode -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp +[ 28%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h -[ 28%] Generating ../generated/nucleotide_clustering.sh.h [ 28%] Generating ../generated/linsearch.sh.h -[ 28%] Generating ../generated/iterativepp.sh.h -[ 28%] Generating ../generated/tsv2exprofiledb.sh.h -[ 28%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +[ 28%] Built target ksw2 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 28%] Built target tinyexpr -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/nucleotide_clustering.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 28%] Built target ksw2 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 28%] Built target generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' [ 28%] Built target alp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' +[ 28%] Built target generated make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 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src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -7785,8 +7825,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7820,10 +7860,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7857,7 +7895,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7890,10 +7928,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7927,7 +7966,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7961,7 +8002,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -7994,11 +8035,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8034,7 +8075,9 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8047,34 +8090,20 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -8095,6 +8124,22 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -8103,11 +8148,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8143,8 +8185,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8177,14 +8218,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8221,8 +8259,8 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8257,10 +8295,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8295,9 +8333,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8331,11 +8367,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8381,6 +8413,7 @@ 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -8389,6 +8422,7 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -8405,10 +8439,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8441,11 +8478,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8480,15 +8518,13 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8524,8 +8560,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8560,7 +8596,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8595,10 +8634,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8631,13 +8669,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8670,9 +8704,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8705,7 +8743,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -8742,17 +8779,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8785,9 +8816,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -8820,8 +8858,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: @@ -8857,6 +8893,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -8887,6 +8928,7 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -8895,27 +8937,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: @@ -8951,10 +8972,25 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o @@ -9032,12 +9068,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9070,13 +9105,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9109,10 +9141,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9145,18 +9183,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9189,6 +9220,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -9224,7 +9259,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9258,7 +9293,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9291,15 +9326,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp -[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9332,29 +9360,24 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9423,7 +9446,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9457,7 +9481,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9491,7 +9515,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9516,6 +9540,7 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -9524,10 +9549,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9561,7 +9599,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9594,12 +9635,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9632,8 +9669,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9667,11 +9706,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9705,8 +9740,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9739,11 +9773,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9777,7 +9814,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9845,7 +9882,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9878,10 +9916,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9905,7 +9945,13 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -9913,20 +9959,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -9953,7 +9989,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -9986,11 +10025,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10023,19 +10061,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10068,8 +10095,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10102,11 +10133,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10173,10 +10206,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10209,10 +10243,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10245,8 +10277,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10281,6 +10315,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -10353,8 +10391,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10389,8 +10427,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -10427,10 +10467,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10463,18 +10503,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10507,8 +10539,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -10545,8 +10577,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10581,12 +10613,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10621,10 +10647,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -10693,11 +10715,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10730,12 +10755,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10810,8 +10836,25 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10844,8 +10887,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10878,10 +10923,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10915,7 +10958,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10949,8 +10994,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -10984,9 +11028,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11019,10 +11061,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11055,10 +11096,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11091,14 +11134,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11134,7 +11173,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11170,7 +11210,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11205,9 +11245,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11240,15 +11281,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11281,21 +11317,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11328,16 +11353,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11370,8 +11397,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11404,8 +11438,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11438,14 +11484,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11479,9 +11519,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11515,7 +11553,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11566,14 +11604,23 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -11581,17 +11628,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -11616,8 +11654,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11650,24 +11690,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11700,14 +11728,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11741,8 +11765,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11775,8 +11802,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11809,6 +11844,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -11843,10 +11880,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11880,11 +11919,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11917,8 +11953,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -11974,7 +12014,6 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -11987,9 +12026,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12023,9 +12067,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12058,14 +12100,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12101,10 +12141,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12137,10 +12174,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12173,18 +12217,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12220,7 +12252,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12253,12 +12285,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12291,12 +12329,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12329,10 +12365,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12366,7 +12400,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12402,7 +12436,7 @@ [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12435,10 +12469,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12471,6 +12505,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o @@ -12478,10 +12514,7 @@ [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12514,10 +12547,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -12552,9 +12581,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12587,10 +12622,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12623,8 +12657,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12657,8 +12697,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: @@ -12694,8 +12732,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12728,6 +12768,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, @@ -12748,6 +12789,7 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -12798,11 +12840,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12835,12 +12876,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12873,10 +12913,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12909,15 +12950,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -12950,12 +12984,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13023,10 +13055,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13059,8 +13093,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13094,8 +13134,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13128,12 +13167,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13166,12 +13204,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -13208,10 +13242,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13245,7 +13283,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13279,7 +13317,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13313,9 +13351,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -13440,7 +13476,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' - cd build_sse4.1 && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse4.1 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1//CMakeFiles/progress.marks @@ -13451,9 +13487,9 @@ make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/cacode/CMakeFiles/cacode.dir/DependInfo.cmake "--color=" make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend @@ -13471,113 +13507,119 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/build +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make -f 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_dynprogprobproto.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 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-msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/cacode/CMakeFiles/cacode.dir/nrutil.cpp.o -MF CMakeFiles/cacode.dir/nrutil.cpp.o.d -o CMakeFiles/cacode.dir/nrutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode/nrutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_basic.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && 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/build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated @@ -13590,210 +13632,204 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h -[ 17%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h -[ 18%] Generating ../generated/easyrbh.sh.h -[ 19%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 19%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 19%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp -[ 20%] Generating ../generated/linclust.sh.h -[ 20%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h +[ 18%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +[ 18%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h +[ 20%] Generating ../generated/rbh.sh.h +[ 22%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 21%] Generating ../generated/cascaded_clustering.sh.h [ 22%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 24%] Generating ../generated/update_clustering.sh.h -[ 24%] Generating ../generated/searchtargetprofile.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h -[ 23%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +[ 22%] Linking CXX static library libversion.a +[ 23%] Generating ../generated/searchtargetprofile.sh.h +[ 24%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 24%] Generating ../generated/clustering.sh.h +[ 24%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h +[ 25%] Generating ../generated/multihitdb.sh.h +[ 26%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h.tmp -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h +[ 26%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastp.sh.h -[ 24%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp +[ 26%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h -[ 24%] Built target version -[ 25%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h -[ 25%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h -[ 26%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh -[ 26%] Generating ../generated/blastn.sh.h -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/rbh.sh.h [ 26%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 26%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 27%] Generating ../generated/taxonomy.sh.h -[ 27%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -[ 27%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp +[ 26%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +[ 26%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h +[ 27%] Generating ../generated/databases.sh.h +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh -[ 27%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +[ 27%] Built target version cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +[ 27%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 27%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated +[ 27%] Linking C static library libmicrotar.a +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/databases.sh.h -[ 27%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' @@ -13834,7 +13870,7 @@ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 27%] Built target cacode +[ 27%] Built target ksw2 [ 28%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 @@ -13843,7 +13879,7 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' [ 28%] Built target tinyexpr make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' -[ 28%] Built target ksw2 +[ 28%] Built target cacode cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' @@ -13856,88 +13892,92 @@ make[4]: Leaving directory 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/LibraryReader.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -14007,8 +14047,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14042,7 +14084,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14076,7 +14119,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14147,7 +14194,7 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14164,28 +14211,18 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -14193,11 +14230,24 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -14216,9 +14266,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14254,8 +14304,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14289,11 +14338,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14329,7 +14374,9 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14363,7 +14410,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14397,10 +14447,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14436,9 +14483,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14473,8 +14519,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBConcat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14509,10 +14554,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14547,9 +14591,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14582,12 +14624,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14620,11 +14659,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14645,31 +14685,30 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -14696,9 +14735,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14731,11 +14771,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14769,8 +14808,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14805,9 +14843,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14841,8 +14879,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14878,9 +14915,9 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14915,8 +14952,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -14949,22 +14987,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15032,8 +15058,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: @@ -15069,8 +15093,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -15120,6 +15154,12 @@ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -15158,22 +15198,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: @@ -15238,6 +15278,31 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -15254,24 +15319,24 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15305,7 +15370,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15322,15 +15387,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -15346,10 +15402,16 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 105 | SeqProf(T first, T second) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -15375,12 +15437,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15417,8 +15479,7 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15452,10 +15513,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15488,8 +15546,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -15525,7 +15581,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.h:8, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15559,7 +15619,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15592,15 +15653,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15675,6 +15729,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o +[ 57%] Building CXX object 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: @@ -15710,8 +15774,22 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15744,8 +15822,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15778,12 +15858,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15817,7 +15893,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15850,10 +15926,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15887,7 +15965,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15921,7 +15999,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -15954,10 +16032,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -15996,11 +16072,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16033,8 +16105,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: @@ -16070,10 +16146,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16106,10 +16180,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16143,7 +16216,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16215,8 +16288,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -16251,8 +16322,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16320,10 +16396,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16357,8 +16430,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16392,7 +16464,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16426,7 +16498,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16460,7 +16532,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16493,18 +16565,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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-cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16537,10 +16606,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering 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[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp +[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16573,8 +16651,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -16613,9 +16689,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16649,11 +16723,13 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16670,7 +16746,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -16687,7 +16762,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -16724,7 +16798,40 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -16763,9 +16870,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16798,11 +16904,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16835,8 +16944,6 @@ 105 | SeqProf(T first, T second) { | ^ 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src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o @@ -16875,12 +16982,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16948,7 +17066,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -16981,21 +17099,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17065,7 +17178,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17098,10 +17211,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17134,8 +17245,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -17171,7 +17282,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17204,11 +17315,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17241,10 +17355,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17312,8 +17430,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17346,12 +17468,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17386,10 +17506,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17422,17 +17541,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17465,8 +17577,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -17503,13 +17613,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17542,14 +17649,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17584,14 +17687,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp -[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17624,20 +17721,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ +[ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -17676,8 +17770,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17711,7 +17811,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17745,7 +17845,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17779,7 +17879,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17880,8 +17980,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17915,7 +18023,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17948,14 +18058,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -17988,6 +18096,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18022,70 +18136,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && 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src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ @@ -18108,8 +18173,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18143,7 +18210,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18177,8 +18245,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18211,8 +18278,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18245,13 +18314,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18284,12 +18358,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18322,15 +18399,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18363,10 +18433,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18399,12 +18480,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18415,6 +18491,7 @@ 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -18439,8 +18516,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18475,13 +18553,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18500,38 +18571,9 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -18546,7 +18588,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18580,9 +18624,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18615,10 +18657,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18653,12 +18691,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18726,10 +18763,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18763,10 +18797,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18775,11 +18806,6 @@ 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -18788,14 +18814,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -18812,6 +18830,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { @@ -18834,7 +18867,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18867,22 +18901,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT 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CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18915,10 +18938,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -18927,7 +18958,6 @@ 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -18940,7 +18970,6 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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98 | SeqProf() {} | ^ @@ -18953,9 +18982,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -18990,8 +19016,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && 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src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: @@ -19011,22 +19039,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19061,6 +19073,24 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19095,10 +19125,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19108,7 +19138,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -19121,7 +19150,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -19135,6 +19163,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19169,6 +19199,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o @@ -19176,11 +19212,8 @@ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19213,10 +19246,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19249,11 +19284,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -19292,6 +19322,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: @@ -19327,14 +19359,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -19353,11 +19377,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -19374,6 +19393,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp +[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -19469,7 +19505,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19503,9 +19541,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19539,7 +19575,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19573,7 +19609,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19607,7 +19643,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -19698,7 +19734,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' - cd build_ssse3 && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3//CMakeFiles/progress.marks @@ -19708,124 +19744,133 @@ make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend +make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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+make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/src/version 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF 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VTML80.out +[ 2%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +[ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +[ 2%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c -cd 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CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated @@ -19833,8 +19878,6 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated @@ -19843,73 +19886,102 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp +[ 18%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp -[ 17%] Generating ../generated/easyrbh.sh.h -[ 17%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp [ 19%] Linking CXX static library libversion.a -[ 19%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -[ 19%] Generating ../generated/map.sh.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h +[ 20%] Generating ../generated/linclust.sh.h +[ 20%] Generating ../generated/map.sh.h +[ 20%] Generating ../generated/rbh.sh.h +[ 20%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +[ 21%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +[ 23%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easysearch.sh.h +[ 22%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easycluster.sh.h +[ 23%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh -[ 19%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ @@ -19944,264 +20016,229 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 19%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 19%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -[ 20%] Generating ../generated/linclust.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -[ 20%] Built target microtar -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 21%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp -[ 21%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp -[ 23%] Generating ../generated/cascaded_clustering.sh.h -[ 25%] Generating ../generated/searchtargetprofile.sh.h -[ 25%] Generating ../generated/clustering.sh.h -[ 24%] Generating ../generated/update_clustering.sh.h -[ 25%] Generating ../generated/createindex.sh.h -[ 25%] Built target cacode -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +[ 24%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +[ 24%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/map.sh.h +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +[ 24%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +[ 24%] Built target version cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h +[ 25%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 26%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 25%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h +[ 26%] Built target microtar cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh -[ 25%] Generating ../generated/translated_search.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp -[ 27%] Built target tinyexpr -[ 27%] Generating ../generated/taxpercontig.sh.h -[ 27%] Generating ../generated/multihitdb.sh.h -[ 27%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh +[ 26%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 27%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 27%] Generating ../generated/taxonomy.sh.h -[ 27%] Generating ../generated/linsearch.sh.h -[ 27%] Generating ../generated/searchslicedtargetprofile.sh.h -[ 27%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 26%] Generating ../generated/blastn.sh.h +[ 26%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp +[ 26%] Generating ../generated/taxonomy.sh.h +[ 26%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/createindex.sh.h +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +[ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +[ 26%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +[ 27%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -[ 28%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h -[ 28%] Generating ../generated/iterativepp.sh.h -[ 28%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h -[ 28%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/databases.sh.h +[ 28%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +[ 28%] Built target tinyexpr +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' +[ 28%] Built target cacode +[ 28%] Built target ksw2 cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated/K4000.crf.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' -[ 28%] Built target generated [ 28%] Built target alp +[ 28%] Built target generated make -f 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src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20234,8 +20271,7 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20269,8 +20305,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20304,7 +20339,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Command.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20338,7 +20373,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20372,8 +20410,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20407,8 +20448,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20443,8 +20484,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20478,7 +20521,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20513,9 +20560,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20549,10 +20594,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20587,9 +20629,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20625,8 +20667,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20699,15 +20740,32 @@ from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -20715,6 +20773,11 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { @@ -20724,6 +20787,9 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -20733,10 +20799,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20769,26 +20832,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -20804,10 +20847,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20843,7 +20885,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20860,7 +20903,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -20877,15 +20919,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/UniprotKB.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20921,8 +20957,9 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20956,7 +20993,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -20992,8 +21031,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21027,8 +21066,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21066,7 +21104,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21101,7 +21140,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21135,11 +21176,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21172,12 +21210,17 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.h:12, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/AlignmentSymmetry.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21210,11 +21253,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21247,13 +21290,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/rescorediagonal.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21286,17 +21325,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21329,6 +21361,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o @@ -21337,6 +21373,22 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -21346,6 +21398,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -21359,6 +21413,7 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -21375,27 +21430,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21428,9 +21467,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21463,12 +21509,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: @@ -21479,6 +21521,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -21505,11 +21549,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21542,18 +21582,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp -[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21586,15 +21616,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21629,9 +21652,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21652,18 +21674,6 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -21686,14 +21696,26 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -21703,7 +21725,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21737,8 +21762,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21771,6 +21799,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -21806,7 +21840,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21839,8 +21876,27 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated 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src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21873,28 +21929,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp -[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21927,8 +21967,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -21961,14 +22003,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22001,13 +22040,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22040,12 +22082,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22078,6 +22119,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22113,10 +22157,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22150,8 +22191,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22184,8 +22227,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22219,7 +22264,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22253,7 +22299,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22321,7 +22367,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22354,12 +22400,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22393,12 +22435,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22432,7 +22469,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22465,17 +22502,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22508,8 +22541,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22542,8 +22577,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22577,7 +22614,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22610,8 +22647,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -22650,7 +22685,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22683,8 +22719,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22717,10 +22757,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp -[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -22757,14 +22793,13 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22798,8 +22833,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22832,17 +22866,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22875,12 +22908,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22913,14 +22945,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22953,10 +22981,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/view.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -22989,8 +23023,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23023,8 +23063,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23058,9 +23100,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23093,8 +23133,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23127,13 +23169,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23200,8 +23237,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23234,12 +23278,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23272,15 +23314,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23313,10 +23348,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23350,7 +23387,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23383,8 +23420,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23417,13 +23456,23 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23456,24 +23505,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23507,9 +23541,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23545,9 +23577,8 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23581,8 +23612,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23616,7 +23650,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23649,10 +23685,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23686,9 +23724,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23721,6 +23757,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -23757,6 +23795,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp +[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -23794,12 +23836,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o @@ -23846,12 +23882,10 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23884,14 +23918,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -23927,7 +23959,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23960,8 +23996,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -23995,7 +24033,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24028,8 +24066,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24065,7 +24101,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24098,10 +24134,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24118,16 +24156,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -24144,6 +24172,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -24172,10 +24206,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24208,8 +24244,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24242,18 +24284,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24261,6 +24297,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -24286,12 +24323,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24324,14 +24358,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24348,28 +24382,17 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -24377,11 +24400,23 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -24398,18 +24433,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -24439,6 +24470,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -24469,7 +24510,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24486,6 +24531,7 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -24503,7 +24549,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24536,15 +24582,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24578,7 +24617,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24611,26 +24650,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24643,15 +24664,9 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { @@ -24669,6 +24684,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -24697,10 +24721,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -cd 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src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24733,8 +24759,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24767,10 +24801,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24807,8 +24843,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp +[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24817,6 +24854,7 @@ 33 | NuclAA() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ @@ -24842,9 +24880,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -24877,6 +24913,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24911,8 +24949,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -24947,8 +24989,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25019,10 +25063,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25056,7 +25097,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25089,12 +25133,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25127,10 +25169,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp -[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25165,12 +25203,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25203,14 +25238,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25243,11 +25272,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25280,11 +25311,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25317,10 +25349,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25353,6 +25383,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -25387,8 +25425,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25421,17 +25461,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25464,16 +25496,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25507,11 +25535,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25545,9 +25570,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25581,7 +25604,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25614,9 +25641,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25649,16 +25687,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25691,6 +25725,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: @@ -25727,9 +25763,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25763,7 +25797,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25797,7 +25831,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25831,7 +25865,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25865,7 +25899,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -25956,7 +25992,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' - cd build_sse3 && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build_sse3 && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/CMakeFiles /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3//CMakeFiles/progress.marks @@ -25964,258 +26000,200 @@ make[3]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/cacode/CMakeFiles/cacode.dir/build.make lib/cacode/CMakeFiles/cacode.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-15-6f452+ds /build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/sls_alp_regression.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true PAM30.out cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp/njn_ioutil.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 13%] Generating ../generated/Library255_may17.lib.h -[ 14%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true krona_prelude.html -[ 14%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true K4000.crf -[ 15%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h -[ 16%] Linking CXX static library libversion.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 16%] Generating ../generated/easycluster.sh.h -[ 16%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 17%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 18%] Generating ../generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 19%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 19%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 19%] Generating ../generated/map.sh.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh -[ 19%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp -[ 20%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h -[ 20%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp -[ 20%] Built target version -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h -[ 21%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 23%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh -[ 22%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h -[ 24%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 24%] Generating ../generated/createtaxdb.sh.h -[ 25%] Generating ../generated/multihitdb.sh.h -[ 25%] Generating ../generated/translated_search.sh.h -[ 26%] Generating ../generated/taxpercontig.sh.h -[ 26%] Generating ../generated/multihitsearch.sh.h -[ 26%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 19%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -26251,208 +26229,268 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ +[ 19%] Generating ../generated/blastpgp.sh.h +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +[ 19%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +[ 19%] Built target version cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastpgp.sh +[ 20%] Linking C static library libtinyexpr.a +[ 20%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true map.sh +[ 20%] Generating ../generated/rbh.sh.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' +[ 20%] Built target ksw2 +[ 20%] Built target microtar +[ 20%] Built target cacode +[ 20%] Built target tinyexpr +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true rbh.sh +[ 21%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/map.sh.h +[ 21%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createtaxdb.sh +[ 22%] Generating ../generated/clustering.sh.h +[ 22%] Generating ../generated/searchtargetprofile.sh.h +[ 23%] Generating ../generated/createindex.sh.h +[ 24%] Generating ../generated/update_clustering.sh.h +[ 25%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true cascaded_clustering.sh +[ 25%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true update_clustering.sh +[ 25%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true createindex.sh +[ 26%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp +[ 27%] Generating ../generated/multihitdb.sh.h +[ 27%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h +[ 27%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitdb.sh +[ 27%] Generating ../generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +[ 27%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh +[ 28%] Generating ../generated/databases.sh.h +[ 28%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp -[ 26%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h -[ 26%] Generating ../generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true blastn.sh -[ 26%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h -[ 26%] Built target microtar -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h +[ 28%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h -[ 26%] Generating ../generated/taxonomy.sh.h -[ 26%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -[ 27%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -[ 27%] Generating ../generated/iterativepp.sh.h -[ 27%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true databases.sh +[ 28%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true iterativepp.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /build/reproducible-path/mmseqs2-15-6f452+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/K4000.crf.h.tmp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-15-6f452+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated/nucleotide_clustering.sh.h -[ 28%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/lib/tinyexpr 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src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CommandCaller.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MemoryTracker.cpp cd 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp cd 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src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SequenceWeights.cpp -[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/tantan.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -26522,11 +26560,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26560,11 +26595,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26598,10 +26630,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26635,8 +26664,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/KSeqWrapper.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26670,7 +26701,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26698,11 +26731,6 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -26711,9 +26739,14 @@ 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -26741,9 +26774,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26778,7 +26809,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26812,10 +26845,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26849,7 +26879,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/BandedNucleotideAligner.cpp:7: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26883,9 +26916,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26918,8 +26949,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/StripedSmithWaterman.cpp:26: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26936,25 +26969,12 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -26970,7 +26990,23 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -26989,9 +27025,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27025,8 +27062,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/CompressedA3M.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27046,39 +27085,40 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.cpp:7: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { @@ -27098,10 +27138,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27136,9 +27176,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Clustering.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.cpp:34: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27173,8 +27213,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27209,10 +27250,9 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering/ClusteringAlgorithms.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27247,9 +27287,7 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27278,17 +27316,19 @@ 100 | SeqProf(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/BaseMatrix.cpp:8: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MultipleAlignment.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -27318,9 +27358,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Application.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27391,7 +27430,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MMseqsMPI.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/PSSMCalculator.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27426,10 +27469,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Alignment.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Main.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27462,20 +27503,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27508,6 +27539,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Indexer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, @@ -27548,18 +27584,9 @@ cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/KmerGenerator.cpp -[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp -[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27592,18 +27619,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27636,17 +27665,25 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] - 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ReducedMatrix.cpp +In file included from /usr/include/string.h:548, + from /usr/include/c++/14/cstring:43, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: +In function ‘void* memset(void*, int, size_t)’, + inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: +/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] + 59 | return __builtin___memset_chk (__dest, __ch, __len, + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ + 60 | __glibc_objsize0 (__dest)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexBuilder.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27679,6 +27716,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/UngappedAlignment.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Main.cpp:1: @@ -27716,8 +27759,10 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27750,6 +27795,22 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] + 30 | CacheFriendlyOperations::~CacheFriendlyOperations(){ + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/CacheFriendlyOperations.cpp:30:35: note: remove the ‘< >’ +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o +[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitDb.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/MultiHitSearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.h:4, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/Prefiltering.cpp:1: @@ -27785,17 +27846,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /usr/include/string.h:548, - from /usr/include/c++/14/cstring:43, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Util.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:6: -In function ‘void* memset(void*, int, size_t)’, - inlined from ‘static void SubstitutionMatrix::calcProfileProfileLocalAaBiasCorrectionAln(int8_t*, int, size_t, BaseMatrix*)’ at /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.cpp:174:11: -/usr/include/x86_64-linux-gnu/bits/string_fortified.h:59:33: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744065119617024 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] - 59 | return __builtin___memset_chk (__dest, __ch, __len, - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ - 60 | __glibc_objsize0 (__dest)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o +[ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -27833,16 +27889,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp -[ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/IndexTable.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/PrefilteringIndexReader.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/SequenceLookup.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -27875,26 +27925,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -[ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/Aggregation.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, @@ -27933,6 +27963,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o +[ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/ungappedprefilter.cpp:5: @@ -28073,16 +28111,24 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 33 | NuclAA() {} + | ^ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/combinepvalperset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ @@ -28091,10 +28137,22 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 35 | NuclAA(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 40 | NuclAA(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -28103,6 +28161,14 @@ 98 | SeqProf() {} | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 100 | SeqProf(T first) { | ^ @@ -28111,8 +28177,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp +[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28145,13 +28223,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit/besthitperset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -28165,7 +28243,6 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmerindexdb.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -28182,10 +28259,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28218,10 +28293,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/NcbiTaxonomy.cpp:6: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28255,7 +28329,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/lca.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/addtaxonomy.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28289,7 +28363,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28322,8 +28396,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28356,12 +28436,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/filtertaxseqdb.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28394,10 +28473,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp +[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxmapping.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28430,10 +28510,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createbintaxonomy.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/aggregatetax.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28466,12 +28544,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -28510,9 +28582,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/createtaxdb.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28545,12 +28616,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/compress.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/clusthash.cpp +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28583,9 +28656,15 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28618,10 +28697,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/appenddbtoindex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignall.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28654,17 +28731,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp +[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/EvalueComputation.h:5, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering/QueryMatcher.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmersearch.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28685,6 +28755,7 @@ 91 | SeqProf(const SeqProf &value) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} | ^ @@ -28697,6 +28768,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy/taxonomyreport.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -28766,7 +28840,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/apply.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28800,7 +28874,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convert2fasta.cpp:9: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28871,8 +28946,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/DistanceCalculator.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/alignbykmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -28906,6 +28980,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 26 | NuclAA(const NuclAA &value) { + | ^ +In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertca3m.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { @@ -28923,31 +29002,13 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertalignments.cpp:2: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 91 | SeqProf(const SeqProf &value) { + | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 35 | NuclAA(T first) { @@ -28957,9 +29018,22 @@ 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 98 | SeqProf() {} + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 100 | SeqProf(T first) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 105 | SeqProf(T first, T second) { + | ^ +/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 98 | SeqProf() {} @@ -28973,20 +29047,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/db2tar.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertkb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29019,12 +29081,20 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o +cd 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-c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createdb.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, @@ -29135,50 +29205,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp -In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/convertmsa.cpp:1: -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 26 | NuclAA(const NuclAA &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 33 | NuclAA() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 35 | NuclAA(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 40 | NuclAA(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 91 | SeqProf(const SeqProf &value) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 98 | SeqProf() {} - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:98:15: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 100 | SeqProf(T first) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:100:16: note: remove the ‘< >’ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 105 | SeqProf(T first, T second) { - | ^ -/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp -[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29211,10 +29241,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createtsv.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29250,7 +29282,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createseqfiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29286,8 +29318,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/dbtype.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29321,7 +29352,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/offsetalignment.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createsubdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29355,9 +29386,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/indexdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29425,7 +29454,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29458,8 +29487,21 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp +[ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/view.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29492,9 +29534,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diffseqdbs.cpp:10: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29527,19 +29568,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBWriter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractalignedregion.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29572,7 +29605,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractdomains.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29607,11 +29639,13 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp -[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractorfs.cpp:2: @@ -29647,8 +29681,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp +[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/orftocontig.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -29683,13 +29727,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp -/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29722,13 +29761,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29762,9 +29800,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/gff2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/touchdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29798,7 +29834,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29831,10 +29869,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29867,16 +29907,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createclusterdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp -[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/NucleotideMatrix.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/masksequence.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/renamedbkeys.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29910,9 +29942,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/filtera3m.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29945,10 +29976,18 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o +[ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp +/build/reproducible-path/mmseqs2-15-6f452+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/maskbygff.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -29984,8 +30023,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/IndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergedbs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeclusters.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30021,7 +30059,7 @@ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30054,14 +30092,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp -[ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/nrtotaxmapping.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/mergeresultsbyset.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30094,12 +30128,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/createclusterdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30132,26 +30170,22 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp -[ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2dnamsa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp -[ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/countkmer.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30185,7 +30219,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30219,7 +30253,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/nrtotaxmapping.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30253,7 +30287,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30286,12 +30324,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/msa2result.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30324,10 +30366,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2pssm.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30361,7 +30401,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/pairaln.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2seq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30394,8 +30434,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/profile2neff.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30428,8 +30469,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/prefixid.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2flat.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30498,16 +30540,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30541,11 +30575,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30578,8 +30609,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2repseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2msa.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30614,10 +30653,8 @@ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2rbh.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30650,10 +30687,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/SubstitutionMatrix.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/MsaFilter.h:9, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2profile.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30686,11 +30725,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/result2stats.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/reverseseq.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30724,17 +30760,18 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30770,8 +30807,7 @@ [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/subtractdbs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/cpmvrmlndb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30805,7 +30841,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/setextendeddbtype.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30839,7 +30875,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/extractframes.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitdb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30872,11 +30908,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30909,10 +30944,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sortresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30946,7 +30979,10 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/splitsequence.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/ProfileStates.h:11, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/CSProfile.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/sequence2profile.cpp:5: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -30979,18 +31015,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 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src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizealis.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31075,6 +31093,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translateaa.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeheaders.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31110,7 +31134,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31143,10 +31167,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizetabs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31179,9 +31201,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31194,10 +31221,12 @@ 35 | NuclAA(T first) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:35:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 40 | NuclAA(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:40:15: note: remove the ‘< >’ +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:91:15: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 91 | SeqProf(const SeqProf &value) { | ^ @@ -31214,8 +31243,19 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/unpackdb.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp +[ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash 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-fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/versionstring.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/summarizeresult.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31248,16 +31288,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp -[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: note: remove the ‘< >’ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:33:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 33 | NuclAA() {} @@ -31287,12 +31322,8 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Orf.h:6, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/translatenucs.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2exprofiledb.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31363,7 +31394,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/transitivealign.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tar2db.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31397,9 +31429,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment/Matcher.h:15, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/swapresults.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31466,8 +31496,12 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp +[ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/tsv2db.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/proteinaln2nucl.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31500,8 +31534,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31534,9 +31571,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust 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/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyRbh.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/util/diskspaceavail.cpp:4: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Databases.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31569,8 +31613,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31603,8 +31649,14 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp +[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Cluster.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/ClusterUpdate.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31637,18 +31689,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr 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-DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp -[ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linclust.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -31683,11 +31723,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31720,10 +31759,6 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, @@ -31763,7 +31798,11 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Enrich.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31796,11 +31835,9 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyCluster.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31834,11 +31871,8 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/kmermatcher.h:3, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust/LinsearchIndexReader.h:4, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasySearch.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyLinclust.cpp:3: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31871,10 +31905,16 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31907,15 +31947,10 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp -[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Map.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31948,10 +31983,11 @@ 105 | SeqProf(T first, T second) { | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ +[ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/microtar -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simde -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/simd -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/alp -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/cacode -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-15-6f452+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/alignment -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/clustering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/commons -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/multihit -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/linclust -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/util -I/build/reproducible-path/mmseqs2-15-6f452+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-15-6f452+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Linsearch.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/FileUtil.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Rbh.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -31985,7 +32021,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32019,7 +32055,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32053,7 +32089,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/EasyTaxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/CreateIndex.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32087,7 +32123,9 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Taxonomy.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32121,9 +32159,7 @@ | ^ /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:105:16: note: remove the ‘< >’ In file included from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Parameters.h:16, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/Sequence.h:10, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/DBReader.h:13, - from /build/reproducible-path/mmseqs2-15-6f452+ds/src/workflow/Search.cpp:1: + from /build/reproducible-path/mmseqs2-15-6f452+ds/src/MMseqsBase.cpp:2: /build/reproducible-path/mmseqs2-15-6f452+ds/src/commons/MultiParam.h:26:14: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 26 | NuclAA(const NuclAA &value) { | ^ @@ -32221,7 +32257,7 @@ make[1]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true - cd build_avx2 && make -j40 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx2 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -32233,7 +32269,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx2' - cd build_avx && make -j40 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_avx && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -32245,7 +32281,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_avx' - cd build_sse4.1 && make -j40 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse4.1 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -32257,7 +32293,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse4.1' - cd build_ssse3 && make -j40 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_ssse3 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -32269,7 +32305,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-15-6f452+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_ssse3' - cd build_sse3 && make -j40 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build_sse3 && make -j42 install DESTDIR=/build/reproducible-path/mmseqs2-15-6f452\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-15-6f452+ds -B/build/reproducible-path/mmseqs2-15-6f452+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -32327,9 +32363,9 @@ make[1]: Leaving directory '/build/reproducible-path/mmseqs2-15-6f452+ds' dh_md5sums dh_builddeb +dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_15-6f452+ds-2_amd64.deb'. dpkg-deb: building package 'mmseqs2' in '../mmseqs2_15-6f452+ds-2_amd64.deb'. dpkg-deb: building package 'mmseqs2-examples' in '../mmseqs2-examples_15-6f452+ds-2_all.deb'. -dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_15-6f452+ds-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mmseqs2_15-6f452+ds-2_amd64.buildinfo dpkg-genchanges --build=binary -O../mmseqs2_15-6f452+ds-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -32337,12 +32373,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3976317/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/75240 and its subdirectories -I: Current time: Tue Sep 9 18:38:53 -12 2025 -I: pbuilder-time-stamp: 1757486333 +I: removing directory /srv/workspace/pbuilder/3976317 and its subdirectories +I: Current time: Wed Oct 14 03:14:25 +14 2026 +I: pbuilder-time-stamp: 1791897265